Wall clock time and date at job start Wed Apr 1 2020 03:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38565 * 120.07010 * 359.72700 * 3 2 1 5 5 C 1.38245 * 119.99806 * 179.74110 * 4 3 2 6 6 S 1.76199 * 119.92589 * 180.25256 * 5 4 3 7 7 N 1.65595 * 107.22036 * 270.25675 * 6 5 4 8 8 O 1.42100 * 106.40381 * 23.80284 * 6 5 4 9 9 O 1.42105 * 106.39941 * 156.71634 * 6 5 4 10 10 C 1.38252 * 120.14696 * 0.51620 * 5 4 3 11 11 C 1.38247 * 120.14211 * 359.76128 * 10 5 4 12 12 C 1.38562 * 120.00483 * 359.97438 * 11 10 5 13 13 O 1.35988 * 120.07446 * 179.97438 * 12 11 10 14 14 C 1.42901 * 117.00171 * 0.02929 * 13 12 11 15 15 C 1.50702 * 109.47104 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00039 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99868 * 179.97438 * 15 14 13 18 18 C 1.46501 * 119.99870 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47089 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99930 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00266 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99740 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00447 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46629 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47146 * 119.99909 * 23 21 19 26 26 H 1.48497 * 109.47528 * 240.00336 * 23 21 19 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08004 * 120.00182 * 359.97430 * 4 3 2 31 31 H 0.96999 * 119.99944 * 150.00527 * 7 6 5 32 32 H 0.97003 * 120.00161 * 330.00003 * 7 6 5 33 33 H 1.07996 * 119.92897 * 179.74399 * 10 5 4 34 34 H 1.08008 * 119.99679 * 179.97438 * 11 10 5 35 35 H 1.08998 * 109.46619 * 299.99809 * 14 13 12 36 36 H 1.08999 * 109.47403 * 59.99403 * 14 13 12 37 37 H 0.97002 * 119.99810 * 359.97438 * 17 15 14 38 38 H 1.09003 * 109.46751 * 299.99722 * 18 17 15 39 39 H 1.08999 * 109.47520 * 59.99571 * 18 17 15 40 40 H 0.97000 * 120.00079 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 -0.0057 5 6 1.9225 3.6057 -0.0003 6 16 0.9629 5.0834 -0.0008 7 7 0.6965 5.4943 -1.5827 8 8 -0.3039 4.7394 0.5433 9 8 1.7924 6.1006 0.5438 10 6 3.3031 3.6798 0.0001 11 6 4.0604 2.5232 0.0000 12 6 3.4360 1.2862 0.0001 13 8 4.1796 0.1476 -0.0005 14 6 5.6004 0.3005 -0.0006 15 6 6.2519 -1.0584 -0.0007 16 8 5.5669 -2.0593 -0.0002 17 7 7.5957 -1.1614 -0.0013 18 6 8.2290 -2.4825 -0.0019 19 6 9.7274 -2.3212 -0.0019 20 1 10.1641 -1.3334 -0.0019 21 6 10.5406 -3.4345 -0.0019 22 7 10.0087 -4.6373 -0.0014 23 14 12.3979 -3.2347 -0.0026 24 1 12.7401 -1.7897 -0.0024 25 1 12.9654 -3.8774 1.2099 26 1 12.9646 -3.8779 -1.2151 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2147 2.3196 -0.0106 31 1 -0.1123 5.9688 -1.8309 32 1 1.3492 5.2606 -2.2611 33 1 3.7909 4.6433 0.0001 34 1 5.1387 2.5838 -0.0002 35 1 5.9064 0.8506 -0.8904 36 1 5.9068 0.8499 0.8895 37 1 8.1435 -0.3609 -0.0021 38 1 7.9232 -3.0324 0.8881 39 1 7.9224 -3.0321 -0.8919 40 1 10.5808 -5.4206 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652246379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:09 Heat of formation + Delta-G solvation = -189.794493 kcal Electronic energy + Delta-G solvation = -26904.126812 eV Core-core repulsion = 22617.731983 eV Total energy + Delta-G solvation = -4286.394830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88289 -40.67728 -39.40518 -38.25646 -38.04148 -36.91844 -36.20622 -34.42597 -34.01813 -31.94303 -31.63538 -30.35053 -28.39719 -28.26176 -24.86767 -24.02644 -23.49104 -21.60582 -20.69860 -20.05410 -19.16951 -19.08371 -18.34982 -18.09584 -17.81968 -17.61245 -17.22305 -16.98267 -16.82045 -16.69490 -16.19531 -16.14001 -15.76652 -15.67979 -15.08302 -14.53663 -14.25212 -14.17020 -14.09058 -13.82958 -13.67525 -13.23148 -13.19987 -13.11551 -12.92261 -12.77125 -12.73477 -12.55298 -12.39516 -12.21628 -12.20872 -11.92206 -11.47200 -11.29238 -10.90082 -10.83830 -10.11483 -9.93734 -9.22790 -8.30104 -6.46947 -0.62616 -0.32780 0.11497 1.42979 1.45316 1.50689 1.57154 1.59513 2.09091 2.22004 2.33959 2.36420 2.71271 2.75950 3.05452 3.38969 3.56976 3.70262 3.87483 3.98284 4.01086 4.07551 4.10323 4.31007 4.33404 4.46993 4.58322 4.70652 4.87332 4.94821 5.07500 5.20240 5.30909 5.39763 5.42113 5.61760 5.81399 5.86024 6.37929 6.38966 6.63126 6.79336 7.21219 7.38507 8.82369 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.001979 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.162474 B =14142.780155 C =15226.667811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.333 6.333 3 C 0.059 3.941 4 C -0.077 4.077 5 C -0.680 4.680 6 S 2.736 3.264 7 N -1.232 6.232 8 O -0.995 6.995 9 O -0.988 6.988 10 C -0.010 4.010 11 C -0.192 4.192 12 C 0.139 3.861 13 O -0.307 6.307 14 C 0.045 3.955 15 C 0.495 3.505 16 O -0.591 6.591 17 N -0.696 5.696 18 C 0.266 3.734 19 C -0.553 4.553 20 H 0.090 0.910 21 C 0.001 3.999 22 N -0.932 5.932 23 Si 0.987 3.013 24 H -0.250 1.250 25 H -0.281 1.281 26 H -0.280 1.280 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.167 0.833 31 H 0.431 0.569 32 H 0.430 0.570 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.415 0.585 38 H -0.012 1.012 39 H -0.011 1.011 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.938 24.872 -4.470 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.248 6.248 3 C 0.013 3.987 4 C -0.096 4.096 5 C -0.767 4.767 6 S 2.823 3.177 7 N -0.912 5.912 8 O -0.984 6.984 9 O -0.977 6.977 10 C -0.029 4.029 11 C -0.211 4.211 12 C 0.092 3.908 13 O -0.219 6.219 14 C -0.032 4.032 15 C 0.281 3.719 16 O -0.472 6.472 17 N -0.348 5.348 18 C 0.143 3.857 19 C -0.591 4.591 20 H 0.108 0.892 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.810 3.190 24 H -0.173 1.173 25 H -0.207 1.207 26 H -0.206 1.206 27 H 0.132 0.868 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.184 0.816 31 H 0.264 0.736 32 H 0.260 0.740 33 H 0.193 0.807 34 H 0.197 0.803 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.252 0.748 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.624 23.978 -3.535 30.566 hybrid contribution 1.118 -0.996 -0.557 1.598 sum -17.506 22.982 -4.092 29.178 Atomic orbital electron populations 1.23458 0.76302 1.05810 1.02766 1.86254 1.23517 1.25903 1.89119 1.18619 0.89672 0.86149 1.04279 1.20902 1.01021 0.89468 0.98258 1.30435 1.07775 1.17100 1.21426 1.00374 0.72137 0.72479 0.72710 1.52736 1.35167 1.75695 1.27568 1.93552 1.42420 1.84506 1.77964 1.93591 1.70258 1.56280 1.77582 1.21072 0.91083 1.00094 0.90677 1.21630 1.02887 0.89555 1.07068 1.19070 0.88811 0.86725 0.96236 1.86284 1.18659 1.29305 1.87659 1.22778 0.78458 0.94447 1.07527 1.20883 0.82995 0.91367 0.76667 1.90711 1.64143 1.40811 1.51524 1.45989 1.05167 1.11097 1.72574 1.18607 0.92684 0.80084 0.94324 1.21640 0.90180 0.94515 1.52748 0.89227 1.26101 1.05405 0.94424 0.93908 1.70151 1.37988 0.98933 1.50005 0.85080 0.77051 0.79349 0.77532 1.17274 1.20704 1.20609 0.86797 0.90641 0.91325 0.81583 0.73641 0.73953 0.80667 0.80322 0.84600 0.84973 0.74834 0.99389 0.99277 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -9.16 10.28 -79.59 -0.82 -9.97 16 3 C 0.06 1.46 6.70 22.57 0.15 1.61 16 4 C -0.08 -1.40 8.51 22.35 0.19 -1.21 16 5 C -0.68 -10.28 5.97 22.27 0.13 -10.15 16 6 S 2.74 35.91 6.28 -56.49 -0.35 35.55 16 7 N -1.23 -5.53 9.52 37.02 0.35 -5.18 16 8 O -0.99 -19.36 17.28 -128.00 -2.21 -21.57 16 9 O -0.99 -18.76 17.27 -128.00 -2.21 -20.97 16 10 C -0.01 -0.14 9.51 22.28 0.21 0.08 16 11 C -0.19 -3.09 9.04 22.35 0.20 -2.89 16 12 C 0.14 3.42 6.70 22.57 0.15 3.57 16 13 O -0.31 -9.63 9.45 -67.00 -0.63 -10.27 16 14 C 0.05 1.12 5.22 71.24 0.37 1.49 16 15 C 0.49 19.38 7.91 87.66 0.69 20.07 16 16 O -0.59 -30.73 16.50 15.99 0.26 -30.47 16 17 N -0.70 -27.56 5.55 -466.78 -2.59 -30.15 16 18 C 0.27 14.22 5.43 85.63 0.46 14.69 16 19 C -0.55 -29.00 9.28 25.60 0.24 -28.76 16 20 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 21 C 0.00 0.06 5.46 84.65 0.46 0.52 16 22 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 23 Si 0.99 41.23 29.54 68.60 2.03 43.26 16 24 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 0.91 7.65 -2.39 -0.02 0.89 16 29 H 0.07 0.96 7.68 -2.38 -0.02 0.94 16 30 H 0.17 2.40 5.86 -2.91 -0.02 2.39 16 31 H 0.43 0.55 8.96 -96.75 -0.87 -0.32 16 32 H 0.43 0.02 8.96 -96.74 -0.87 -0.85 16 33 H 0.18 1.41 7.61 -2.91 -0.02 1.39 16 34 H 0.18 1.64 6.30 -2.91 -0.02 1.62 16 35 H 0.14 2.18 7.66 -2.39 -0.02 2.16 16 36 H 0.13 2.23 7.66 -2.39 -0.02 2.21 16 37 H 0.41 12.46 8.32 -92.71 -0.77 11.69 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -91.96 362.82 -2.88 -94.84 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -1.37 Total: 9.99 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 4.38 Total: 0.31 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -1.95 Total: -90.70 kcal Atomic # 8 Polarization: -87.65 SS G_CDS: -5.61 Total: -93.26 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 35.91 SS G_CDS: -0.35 Total: 35.55 kcal Total: -91.96 -2.88 -94.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652246379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.953 kcal (2) G-P(sol) polarization free energy of solvation -91.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds