Wall clock time and date at job start Wed Apr 1 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00697 * 2 1 4 4 H 1.48494 * 109.47134 * 275.68269 * 3 2 1 5 5 H 1.48510 * 109.46700 * 35.67867 * 3 2 1 6 6 H 1.48501 * 109.47375 * 155.67770 * 3 2 1 7 7 C 1.38818 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99844 * 337.75912 * 7 2 1 9 9 N 1.36935 * 120.00060 * 157.76844 * 7 2 1 10 10 C 1.46493 * 120.00071 * 321.41852 * 9 7 2 11 11 C 1.52996 * 109.47574 * 270.00369 * 10 9 7 12 12 N 1.46502 * 109.47531 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00262 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.47573 * 120.00334 * 179.97438 * 13 12 11 16 16 C 1.39735 * 120.13290 * 0.02562 * 15 13 12 17 17 C 1.37743 * 119.92732 * 180.02562 * 16 15 13 18 18 C 1.38737 * 120.20243 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.86640 * 180.02562 * 18 17 16 20 20 C 1.38594 * 120.27353 * 359.97438 * 18 17 16 21 21 Cl 1.73598 * 119.96270 * 180.02562 * 20 18 17 22 22 C 1.38296 * 120.07173 * 359.72615 * 20 18 17 23 23 F 1.35093 * 120.10269 * 180.29834 * 22 20 18 24 24 C 1.46501 * 119.99913 * 141.42095 * 9 7 2 25 25 C 1.52999 * 117.50073 * 3.19339 * 24 9 7 26 26 C 1.52995 * 117.50130 * 294.53177 * 24 9 7 27 27 H 0.97001 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47227 * 30.00416 * 10 9 7 29 29 H 1.09005 * 109.47289 * 150.00051 * 10 9 7 30 30 H 1.09004 * 109.47053 * 299.99751 * 11 10 9 31 31 H 1.09005 * 109.47072 * 59.99549 * 11 10 9 32 32 H 0.97005 * 119.99773 * 359.97438 * 12 11 10 33 33 H 1.08003 * 120.03796 * 0.02562 * 16 15 13 34 34 H 1.07996 * 119.90420 * 180.02562 * 17 16 15 35 35 H 1.09000 * 115.55086 * 148.86010 * 24 9 7 36 36 H 1.09002 * 117.49641 * 359.97438 * 25 24 9 37 37 H 1.08999 * 117.50047 * 145.02016 * 25 24 9 38 38 H 1.09001 * 117.49936 * 214.98397 * 26 24 9 39 39 H 1.09001 * 117.49800 * 359.97339 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.3779 2.1156 -1.3931 5 1 1.5129 2.6150 0.8166 6 1 3.6027 1.4083 0.5766 7 6 2.0102 -1.2022 -0.0005 8 1 1.5303 -2.1029 0.3531 9 7 3.3032 -1.2462 -0.4492 10 6 3.7037 -0.4457 -1.6088 11 6 3.5025 -1.2626 -2.8867 12 7 3.9037 -0.4622 -4.0463 13 6 3.8129 -0.9807 -5.2870 14 8 3.3976 -2.1126 -5.4439 15 6 4.2164 -0.1743 -6.4552 16 6 4.6936 1.1271 -6.2781 17 6 5.0686 1.8762 -7.3715 18 6 4.9746 1.3425 -8.6487 19 9 5.3447 2.0831 -9.7162 20 6 4.5035 0.0523 -8.8338 21 17 4.3898 -0.6077 -10.4354 22 6 4.1297 -0.7121 -7.7436 23 9 3.6761 -1.9719 -7.9229 24 6 4.2859 -2.0939 0.2304 25 6 3.7894 -2.9625 1.3879 26 6 4.6552 -1.7323 1.6704 27 1 -0.4849 0.8401 -0.0004 28 1 3.0945 0.4571 -1.6551 29 1 4.7543 -0.1706 -1.5151 30 1 4.1118 -2.1653 -2.8406 31 1 2.4519 -1.5377 -2.9805 32 1 4.2347 0.4410 -3.9212 33 1 4.7683 1.5451 -5.2851 34 1 5.4377 2.8818 -7.2342 35 1 5.0730 -2.5023 -0.4036 36 1 2.7316 -2.9029 1.6440 37 1 4.2500 -3.9421 1.5157 38 1 5.6852 -1.9029 1.9838 39 1 4.1674 -0.8633 2.1120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663753406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:45 Heat of formation + Delta-G solvation = -42.767682 kcal Electronic energy + Delta-G solvation = -26994.462409 eV Core-core repulsion = 22601.311918 eV Total energy + Delta-G solvation = -4393.150491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.61864 -49.29161 -40.22669 -38.58855 -37.42202 -37.03696 -35.11477 -33.39490 -31.83978 -31.17983 -31.03881 -27.94363 -24.79058 -24.13600 -23.62977 -22.39658 -21.47597 -20.83865 -19.74751 -18.92627 -18.12502 -17.85937 -16.68747 -16.46736 -16.33982 -15.84961 -15.80038 -15.69625 -15.63726 -15.12160 -14.88609 -14.84458 -14.11574 -13.83944 -13.44129 -13.31138 -13.10017 -13.03422 -12.64044 -12.37867 -12.30462 -12.01373 -11.95053 -11.71466 -11.54955 -10.94837 -10.82975 -10.52202 -10.14817 -10.08727 -9.92427 -9.59851 -9.50386 -9.43372 -9.36643 -8.85961 -8.63042 -6.89901 -6.13958 -3.58801 -0.04374 0.28326 1.36457 2.27741 2.99174 3.11668 3.14985 3.23919 3.33913 3.38519 3.71094 3.97534 4.15855 4.29134 4.36200 4.69533 4.79634 4.85348 4.97925 5.14556 5.20983 5.29089 5.37920 5.62540 5.65114 5.71524 5.90320 5.92959 5.97418 6.06992 6.34407 6.36556 6.46710 6.52532 6.70374 6.85344 7.04895 7.49590 7.89978 8.18264 8.27774 8.82510 9.54219 9.92292 11.00453 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002605 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.920996 B =10744.324619 C =11294.782089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.040 3.960 3 Si 0.874 3.126 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.275 4.275 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.131 3.869 11 C 0.099 3.901 12 N -0.715 5.715 13 C 0.553 3.447 14 O -0.518 6.518 15 C -0.166 4.166 16 C -0.025 4.025 17 C -0.159 4.159 18 C 0.162 3.838 19 F -0.114 7.114 20 C -0.131 4.131 21 Cl -0.022 7.022 22 C 0.199 3.801 23 F -0.090 7.090 24 C 0.118 3.882 25 C -0.186 4.186 26 C -0.222 4.222 27 H 0.265 0.735 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.395 0.605 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 5.091 -15.514 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.403 4.403 8 H 0.103 0.897 9 N -0.286 5.286 10 C 0.004 3.996 11 C -0.026 4.026 12 N -0.366 5.366 13 C 0.338 3.662 14 O -0.395 6.395 15 C -0.170 4.170 16 C -0.044 4.044 17 C -0.178 4.178 18 C 0.141 3.859 19 F -0.092 7.092 20 C -0.160 4.160 21 Cl 0.007 6.993 22 C 0.178 3.822 23 F -0.068 7.068 24 C 0.009 3.991 25 C -0.224 4.224 26 C -0.262 4.262 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.229 0.771 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.679 4.258 -15.770 20.678 hybrid contribution 0.454 1.361 -0.280 1.461 sum 13.134 5.618 -16.050 21.486 Atomic orbital electron populations 1.69864 1.06012 1.26945 1.50192 1.25520 0.95084 0.97798 0.97730 0.86978 0.81036 0.84693 0.76935 1.21382 1.22685 1.18967 1.18753 0.85698 0.94628 1.41266 0.89715 1.43497 1.07206 1.50729 1.27156 1.21331 0.98144 0.94289 0.85795 1.22382 1.01850 0.94809 0.83514 1.45977 1.65954 1.18543 1.06162 1.17696 0.79380 0.86426 0.82681 1.90883 1.45054 1.18096 1.85451 1.20268 1.07355 0.96588 0.92816 1.21235 0.91995 0.91097 1.00028 1.21132 1.04588 1.02594 0.89468 1.17274 0.96797 0.87293 0.84551 1.91594 1.88222 1.75352 1.54038 1.20881 1.11641 0.94935 0.88565 1.98419 1.96797 1.85152 1.18968 1.17016 0.94023 0.80446 0.90753 1.91684 1.84665 1.34830 1.95606 1.21185 0.94114 0.97064 0.86698 1.23082 1.01115 0.93532 1.04708 1.23380 0.98456 0.99799 1.04606 0.92472 0.92169 0.93327 0.91660 0.90072 0.77056 0.82663 0.82237 0.88940 0.87781 0.90337 0.90729 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.97 55.49 0.78 -25.05 16 2 C 0.04 1.09 5.30 -17.43 -0.09 1.00 16 3 Si 0.87 20.29 25.08 -169.99 -4.26 16.02 16 4 H -0.29 -6.20 6.69 56.52 0.38 -5.82 16 5 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.28 -7.14 8.95 -15.06 -0.13 -7.28 16 8 H 0.09 2.41 6.86 -52.48 -0.36 2.05 16 9 N -0.57 -12.35 2.39 -165.67 -0.40 -12.75 16 10 C 0.13 2.46 4.66 -4.05 -0.02 2.44 16 11 C 0.10 1.75 6.00 -4.04 -0.02 1.73 16 12 N -0.71 -10.09 5.51 -61.34 -0.34 -10.43 16 13 C 0.55 8.43 7.76 -12.46 -0.10 8.33 16 14 O -0.52 -10.11 15.34 5.29 0.08 -10.03 16 15 C -0.17 -1.94 5.88 -104.91 -0.62 -2.55 16 16 C -0.02 -0.19 9.53 -39.20 -0.37 -0.56 16 17 C -0.16 -1.07 10.00 -39.58 -0.40 -1.46 16 18 C 0.16 1.42 7.28 -39.27 -0.29 1.13 16 19 F -0.11 -1.01 16.82 2.25 0.04 -0.98 16 20 C -0.13 -1.39 6.32 -39.43 -0.25 -1.64 16 21 Cl -0.02 -0.23 28.26 -51.86 -1.47 -1.70 16 22 C 0.20 2.48 7.26 -38.94 -0.28 2.20 16 23 F -0.09 -1.35 15.11 2.25 0.03 -1.31 16 24 C 0.12 2.22 6.56 -67.93 -0.45 1.77 16 25 C -0.19 -3.40 9.80 -26.69 -0.26 -3.66 16 26 C -0.22 -3.98 10.36 -26.70 -0.28 -4.25 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.06 1.23 3.40 -51.93 -0.18 1.05 16 29 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.39 4.19 6.50 -40.82 -0.27 3.92 16 33 H 0.16 0.78 6.40 -52.48 -0.34 0.45 16 34 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 36 H 0.10 2.16 6.45 -51.93 -0.33 1.82 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -31.36 351.94 -7.79 -39.15 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.01 Total: 4.58 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.56 Total: -2.81 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.04 Total: -48.23 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.07 Total: -2.29 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.26 Total: 16.02 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.47 Total: -1.70 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.36 -7.79 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663753406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.615 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds