Wall clock time and date at job start Wed Apr 1 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00697 * 2 1 4 4 H 1.48494 * 109.47134 * 275.68269 * 3 2 1 5 5 H 1.48510 * 109.46700 * 35.67867 * 3 2 1 6 6 H 1.48501 * 109.47375 * 155.67770 * 3 2 1 7 7 C 1.38818 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99844 * 337.75912 * 7 2 1 9 9 N 1.36935 * 120.00060 * 157.76844 * 7 2 1 10 10 C 1.46493 * 120.00071 * 321.41852 * 9 7 2 11 11 C 1.52996 * 109.47574 * 270.00369 * 10 9 7 12 12 N 1.46502 * 109.47531 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00262 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.47573 * 120.00334 * 179.97438 * 13 12 11 16 16 C 1.39735 * 120.13290 * 0.02562 * 15 13 12 17 17 C 1.37743 * 119.92732 * 180.02562 * 16 15 13 18 18 C 1.38737 * 120.20243 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.86640 * 180.02562 * 18 17 16 20 20 C 1.38594 * 120.27353 * 359.97438 * 18 17 16 21 21 Cl 1.73598 * 119.96270 * 180.02562 * 20 18 17 22 22 C 1.38296 * 120.07173 * 359.72615 * 20 18 17 23 23 F 1.35093 * 120.10269 * 180.29834 * 22 20 18 24 24 C 1.46501 * 119.99913 * 141.42095 * 9 7 2 25 25 C 1.52999 * 117.50073 * 3.19339 * 24 9 7 26 26 C 1.52995 * 117.50130 * 294.53177 * 24 9 7 27 27 H 0.97001 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47227 * 30.00416 * 10 9 7 29 29 H 1.09005 * 109.47289 * 150.00051 * 10 9 7 30 30 H 1.09004 * 109.47053 * 299.99751 * 11 10 9 31 31 H 1.09005 * 109.47072 * 59.99549 * 11 10 9 32 32 H 0.97005 * 119.99773 * 359.97438 * 12 11 10 33 33 H 1.08003 * 120.03796 * 0.02562 * 16 15 13 34 34 H 1.07996 * 119.90420 * 180.02562 * 17 16 15 35 35 H 1.09000 * 115.55086 * 148.86010 * 24 9 7 36 36 H 1.09002 * 117.49641 * 359.97438 * 25 24 9 37 37 H 1.08999 * 117.50047 * 145.02016 * 25 24 9 38 38 H 1.09001 * 117.49936 * 214.98397 * 26 24 9 39 39 H 1.09001 * 117.49800 * 359.97339 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.3779 2.1156 -1.3931 5 1 1.5129 2.6150 0.8166 6 1 3.6027 1.4083 0.5766 7 6 2.0102 -1.2022 -0.0005 8 1 1.5303 -2.1029 0.3531 9 7 3.3032 -1.2462 -0.4492 10 6 3.7037 -0.4457 -1.6088 11 6 3.5025 -1.2626 -2.8867 12 7 3.9037 -0.4622 -4.0463 13 6 3.8129 -0.9807 -5.2870 14 8 3.3976 -2.1126 -5.4439 15 6 4.2164 -0.1743 -6.4552 16 6 4.6936 1.1271 -6.2781 17 6 5.0686 1.8762 -7.3715 18 6 4.9746 1.3425 -8.6487 19 9 5.3447 2.0831 -9.7162 20 6 4.5035 0.0523 -8.8338 21 17 4.3898 -0.6077 -10.4354 22 6 4.1297 -0.7121 -7.7436 23 9 3.6761 -1.9719 -7.9229 24 6 4.2859 -2.0939 0.2304 25 6 3.7894 -2.9625 1.3879 26 6 4.6552 -1.7323 1.6704 27 1 -0.4849 0.8401 -0.0004 28 1 3.0945 0.4571 -1.6551 29 1 4.7543 -0.1706 -1.5151 30 1 4.1118 -2.1653 -2.8406 31 1 2.4519 -1.5377 -2.9805 32 1 4.2347 0.4410 -3.9212 33 1 4.7683 1.5451 -5.2851 34 1 5.4377 2.8818 -7.2342 35 1 5.0730 -2.5023 -0.4036 36 1 2.7316 -2.9029 1.6440 37 1 4.2500 -3.9421 1.5157 38 1 5.6852 -1.9029 1.9838 39 1 4.1674 -0.8633 2.1120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663753406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:45 Heat of formation + Delta-G solvation = -62.796478 kcal Electronic energy + Delta-G solvation = -26995.330923 eV Core-core repulsion = 22601.311918 eV Total energy + Delta-G solvation = -4394.019004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.32405 -50.25864 -41.27648 -39.56600 -38.96325 -37.84180 -36.49755 -35.03026 -33.44165 -32.22407 -31.88231 -29.43896 -26.35392 -25.31552 -24.49414 -23.70649 -22.92269 -21.99439 -21.40984 -19.80879 -19.11410 -18.74382 -18.16144 -17.55182 -17.42870 -17.31410 -17.03329 -16.70866 -16.66138 -16.30708 -16.22345 -15.67852 -15.45613 -15.11012 -14.84742 -14.37105 -14.30216 -14.12499 -13.96303 -13.88539 -13.55135 -13.35316 -13.02337 -12.71869 -12.65032 -12.49484 -12.35259 -12.07799 -11.81278 -11.72552 -11.31661 -11.26328 -10.95515 -10.61945 -10.32738 -10.16252 -10.00806 -8.67940 -8.18930 -5.61708 -0.83125 -0.44860 0.58688 1.28907 1.40372 1.46540 1.57796 1.87793 2.25638 2.35440 2.42900 2.94824 3.01174 3.16984 3.33380 3.35173 3.41744 3.57341 4.02693 4.13547 4.21460 4.29756 4.30286 4.40065 4.49854 4.52020 4.60060 4.63337 4.71998 4.91907 4.97048 5.04697 5.09143 5.25189 5.29922 5.37445 5.55857 5.94533 6.22053 6.39088 6.96976 7.06903 7.60736 7.99422 9.00056 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002605 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.920996 B =10744.324619 C =11294.782089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.022 4.022 3 Si 0.943 3.057 4 H -0.254 1.254 5 H -0.315 1.315 6 H -0.250 1.250 7 C -0.261 4.261 8 H 0.038 0.962 9 N -0.582 5.582 10 C 0.131 3.869 11 C 0.116 3.884 12 N -0.700 5.700 13 C 0.553 3.447 14 O -0.572 6.572 15 C -0.179 4.179 16 C -0.006 4.006 17 C -0.132 4.132 18 C 0.166 3.834 19 F -0.112 7.112 20 C -0.139 4.139 21 Cl -0.029 7.029 22 C 0.174 3.826 23 F -0.116 7.116 24 C 0.104 3.896 25 C -0.194 4.194 26 C -0.204 4.204 27 H 0.263 0.737 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.416 0.584 33 H 0.192 0.808 34 H 0.204 0.796 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.121 8.096 -15.975 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.218 4.218 3 Si 0.770 3.230 4 H -0.180 1.180 5 H -0.244 1.244 6 H -0.173 1.173 7 C -0.391 4.391 8 H 0.056 0.944 9 N -0.302 5.302 10 C 0.006 3.994 11 C -0.010 4.010 12 N -0.353 5.353 13 C 0.340 3.660 14 O -0.452 6.452 15 C -0.184 4.184 16 C -0.024 4.024 17 C -0.151 4.151 18 C 0.145 3.855 19 F -0.090 7.090 20 C -0.168 4.168 21 Cl 0.000 7.000 22 C 0.152 3.848 23 F -0.094 7.094 24 C -0.003 4.003 25 C -0.232 4.232 26 C -0.245 4.245 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.255 0.745 33 H 0.209 0.791 34 H 0.221 0.779 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.657 7.291 -16.247 24.385 hybrid contribution -0.745 0.350 -0.160 0.838 sum 15.912 7.641 -16.407 24.099 Atomic orbital electron populations 1.70027 1.08120 1.27635 1.53348 1.26218 0.95663 1.01773 0.98185 0.85863 0.79617 0.79232 0.78322 1.18041 1.24394 1.17339 1.18523 0.87555 0.93094 1.39921 0.94395 1.43596 1.06293 1.51613 1.28659 1.21422 1.00189 0.93150 0.84674 1.21899 0.99080 0.95318 0.84682 1.45682 1.65507 1.19189 1.04936 1.18199 0.78157 0.86037 0.83621 1.90859 1.47449 1.20691 1.86246 1.20034 1.09577 0.97997 0.90770 1.21621 0.89712 0.88946 1.02137 1.21578 1.02047 1.03832 0.87619 1.17486 0.96005 0.86445 0.85519 1.91609 1.88057 1.75057 1.54284 1.20949 1.12334 0.95692 0.87850 1.98413 1.96889 1.85486 1.19261 1.17305 0.95617 0.80015 0.91859 1.91612 1.85385 1.36615 1.95809 1.21535 0.94321 0.96909 0.87530 1.23056 0.99482 0.95581 1.05093 1.23351 0.99918 0.98157 1.03042 0.92803 0.93431 0.88932 0.91696 0.94796 0.74510 0.79072 0.77865 0.85513 0.91612 0.87229 0.86855 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 13.97 21.65 0.30 -57.28 16 2 C -0.02 -1.20 5.30 84.86 0.45 -0.75 16 3 Si 0.94 41.38 25.08 68.60 1.72 43.10 16 4 H -0.25 -9.78 6.69 99.48 0.67 -9.11 16 5 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.26 -14.04 8.95 84.04 0.75 -13.28 16 8 H 0.04 2.34 6.86 -2.91 -0.02 2.32 16 9 N -0.58 -24.83 2.39 -678.04 -1.62 -26.45 16 10 C 0.13 4.57 4.66 86.38 0.40 4.98 16 11 C 0.12 4.01 6.00 86.38 0.52 4.53 16 12 N -0.70 -18.18 5.51 -466.23 -2.57 -20.75 16 13 C 0.55 16.43 7.76 86.71 0.67 17.11 16 14 O -0.57 -23.13 15.34 -3.99 -0.06 -23.19 16 15 C -0.18 -3.86 5.88 -20.05 -0.12 -3.98 16 16 C -0.01 -0.06 9.53 22.51 0.21 0.15 16 17 C -0.13 -1.06 10.00 22.27 0.22 -0.84 16 18 C 0.17 2.37 7.28 22.47 0.16 2.53 16 19 F -0.11 -1.63 16.82 44.97 0.76 -0.87 16 20 C -0.14 -2.79 6.32 22.37 0.14 -2.65 16 21 Cl -0.03 -0.61 28.26 -2.72 -0.08 -0.69 16 22 C 0.17 4.26 7.26 22.68 0.16 4.42 16 23 F -0.12 -3.66 15.11 44.97 0.68 -2.98 16 24 C 0.10 3.69 6.56 44.99 0.30 3.99 16 25 C -0.19 -6.93 9.80 30.62 0.30 -6.63 16 26 C -0.20 -6.78 10.36 30.62 0.32 -6.46 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.05 1.79 3.40 -2.38 -0.01 1.79 16 29 H 0.09 2.47 8.07 -2.38 -0.02 2.45 16 30 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.42 6.95 6.50 -92.70 -0.60 6.35 16 33 H 0.19 0.65 6.40 -2.91 -0.02 0.63 16 34 H 0.20 -0.01 8.06 -2.91 -0.02 -0.04 16 35 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.07 2.86 6.45 -2.39 -0.02 2.85 16 37 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -76.09 351.94 4.11 -71.98 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.48 Total: 14.01 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.50 Total: 3.12 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -3.89 Total: -104.49 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 1.44 Total: -3.85 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.72 Total: 43.10 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -76.09 4.11 -71.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663753406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.180 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds