Wall clock time and date at job start Wed Apr 1 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47472 * 275.68090 * 3 2 1 5 5 H 1.48510 * 109.47018 * 35.68258 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.67568 * 3 2 1 7 7 C 1.38820 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99613 * 337.76528 * 7 2 1 9 9 N 1.36931 * 119.99908 * 157.76854 * 7 2 1 10 10 C 1.46502 * 120.00148 * 321.42178 * 9 7 2 11 11 C 1.52997 * 109.47175 * 270.00359 * 10 9 7 12 12 N 1.46502 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99798 * 180.02562 * 12 11 10 14 14 O 1.21577 * 120.00287 * 359.97438 * 13 12 11 15 15 C 1.47629 * 119.99828 * 179.97438 * 13 12 11 16 16 C 1.39880 * 120.16029 * 89.72340 * 15 13 12 17 17 F 1.35091 * 120.08620 * 359.97438 * 16 15 13 18 18 C 1.38229 * 119.83803 * 179.76970 * 16 15 13 19 19 C 1.38288 * 120.17545 * 0.50770 * 18 16 15 20 20 C 1.38524 * 120.34298 * 359.74322 * 19 18 16 21 21 F 1.35098 * 119.92776 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.14894 * 0.02562 * 20 19 18 23 23 Cl 1.73609 * 120.08878 * 180.02562 * 22 20 19 24 24 C 1.46497 * 119.99982 * 141.42374 * 9 7 2 25 25 C 1.52998 * 117.49918 * 3.18785 * 24 9 7 26 26 C 1.53005 * 117.50024 * 294.52749 * 24 9 7 27 27 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46819 * 29.99894 * 10 9 7 29 29 H 1.08995 * 109.47227 * 149.99904 * 10 9 7 30 30 H 1.09007 * 109.47234 * 299.99843 * 11 10 9 31 31 H 1.08995 * 109.47415 * 59.99660 * 11 10 9 32 32 H 0.97001 * 120.00170 * 359.97438 * 12 11 10 33 33 H 1.07989 * 119.91265 * 180.25241 * 18 16 15 34 34 H 1.08003 * 119.83017 * 179.72181 * 19 18 16 35 35 H 1.08998 * 115.55168 * 148.86221 * 24 9 7 36 36 H 1.08993 * 117.49883 * 0.02562 * 25 24 9 37 37 H 1.09008 * 117.49720 * 145.02293 * 25 24 9 38 38 H 1.08998 * 117.49713 * 214.98178 * 26 24 9 39 39 H 1.08994 * 117.49515 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6026 1.4084 0.5767 7 6 2.0103 -1.2022 -0.0005 8 1 1.5304 -2.1029 0.3530 9 7 3.3032 -1.2461 -0.4492 10 6 3.7038 -0.4455 -1.6089 11 6 3.5026 -1.2624 -2.8867 12 7 3.9026 -0.4615 -4.0464 13 6 3.8106 -0.9796 -5.2872 14 8 3.3961 -2.1117 -5.4441 15 6 4.2131 -0.1724 -6.4559 16 6 5.5341 -0.2096 -6.9144 17 9 6.4466 -0.9846 -6.2886 18 6 5.9026 0.5452 -8.0122 19 6 4.9717 1.3441 -8.6506 20 6 3.6627 1.3906 -8.1996 21 9 2.7603 2.1744 -8.8293 22 6 3.2779 0.6375 -7.1055 23 17 1.6369 0.6965 -6.5420 24 6 4.2860 -2.0938 0.2303 25 6 3.7895 -2.9624 1.3878 26 6 4.6554 -1.7321 1.6704 27 1 -0.4850 0.8401 0.0004 28 1 3.0945 0.4572 -1.6550 29 1 4.7543 -0.1704 -1.5151 30 1 4.1118 -2.1651 -2.8406 31 1 2.4521 -1.5375 -2.9805 32 1 4.2329 0.4419 -3.9213 33 1 6.9211 0.5142 -8.3697 34 1 5.2668 1.9351 -9.5051 35 1 5.0730 -2.5021 -0.4037 36 1 2.7316 -2.9035 1.6435 37 1 4.2502 -3.9420 1.5156 38 1 5.6853 -1.9028 1.9838 39 1 4.1675 -0.8632 2.1119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663756727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:51 Heat of formation + Delta-G solvation = -65.532233 kcal Electronic energy + Delta-G solvation = -27406.993970 eV Core-core repulsion = 23012.856334 eV Total energy + Delta-G solvation = -4394.137636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.25582 -50.18519 -41.31985 -39.60894 -38.99488 -37.87474 -36.53172 -35.05123 -33.49125 -32.66140 -31.33563 -29.58945 -26.48497 -25.55485 -24.19612 -23.84150 -22.95052 -22.08567 -21.45090 -19.78395 -18.91299 -18.77511 -18.35164 -17.76819 -17.58041 -17.34366 -17.15398 -16.69559 -16.55468 -16.28779 -16.06366 -15.60365 -15.49295 -15.14707 -14.93507 -14.53720 -14.28500 -14.20982 -14.06211 -13.96648 -13.61569 -13.37657 -12.97287 -12.71590 -12.61383 -12.55055 -12.41136 -12.12773 -11.86252 -11.78566 -11.41684 -11.34231 -10.98466 -10.67454 -10.42111 -10.29236 -9.88270 -8.72082 -8.24127 -5.65768 -0.61971 -0.48396 0.59108 1.16075 1.24275 1.38587 1.49728 1.75599 1.94217 2.37080 2.74991 2.78005 2.97448 3.13177 3.31787 3.32540 3.52369 3.60366 3.89600 4.05527 4.11291 4.27363 4.37867 4.41084 4.44066 4.44990 4.54491 4.66953 4.78045 4.84888 4.94820 4.99826 5.01059 5.20563 5.32424 5.34751 5.54052 5.89925 6.17603 6.22742 6.87146 6.93842 7.56110 7.95597 8.94605 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.003480 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.694160 B = 8044.162871 C = 9169.196387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.016 4.016 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.311 1.311 6 H -0.250 1.250 7 C -0.259 4.259 8 H 0.044 0.956 9 N -0.581 5.581 10 C 0.132 3.868 11 C 0.117 3.883 12 N -0.700 5.700 13 C 0.561 3.439 14 O -0.560 6.560 15 C -0.146 4.146 16 C 0.129 3.871 17 F -0.125 7.125 18 C -0.093 4.093 19 C -0.070 4.070 20 C 0.097 3.903 21 F -0.122 7.122 22 C -0.041 4.041 23 Cl -0.044 7.044 24 C 0.101 3.899 25 C -0.189 4.189 26 C -0.205 4.205 27 H 0.263 0.737 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.413 0.587 33 H 0.205 0.795 34 H 0.208 0.792 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.949 6.187 -19.055 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.213 4.213 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.240 1.240 6 H -0.174 1.174 7 C -0.389 4.389 8 H 0.062 0.938 9 N -0.300 5.300 10 C 0.006 3.994 11 C -0.009 4.009 12 N -0.351 5.351 13 C 0.346 3.654 14 O -0.439 6.439 15 C -0.151 4.151 16 C 0.109 3.891 17 F -0.103 7.103 18 C -0.111 4.111 19 C -0.088 4.088 20 C 0.077 3.923 21 F -0.100 7.100 22 C -0.070 4.070 23 Cl -0.015 7.015 24 C -0.005 4.005 25 C -0.227 4.227 26 C -0.245 4.245 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.249 0.751 33 H 0.222 0.778 34 H 0.224 0.776 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.338 5.465 -19.061 26.340 hybrid contribution -1.070 0.888 0.782 1.595 sum 16.268 6.353 -18.279 25.281 Atomic orbital electron populations 1.70005 1.07867 1.27504 1.53359 1.26117 0.95588 1.01283 0.98289 0.85966 0.79905 0.80045 0.77756 1.19355 1.23956 1.17358 1.18547 0.87500 0.93141 1.39686 0.93824 1.43586 1.06436 1.51551 1.28474 1.21374 0.99869 0.93148 0.84963 1.21936 0.99239 0.95229 0.84448 1.45901 1.64838 1.18999 1.05342 1.18152 0.77801 0.86056 0.83438 1.90820 1.46830 1.20115 1.86111 1.19554 0.94167 1.01736 0.99635 1.17699 0.83627 0.93463 0.94312 1.91581 1.64616 1.72627 1.81523 1.21543 1.03732 0.93904 0.91946 1.21632 0.87859 0.98239 1.01099 1.17452 0.89161 0.93613 0.92077 1.91585 1.66655 1.71483 1.80296 1.20881 0.87643 1.00637 0.97848 1.98466 1.17256 1.97346 1.88443 1.21539 0.94363 0.97053 0.87586 1.23055 0.99524 0.95531 1.04619 1.23350 0.99992 0.98268 1.02918 0.92821 0.93853 0.89422 0.91286 0.94479 0.75067 0.77799 0.77555 0.85612 0.91464 0.87035 0.86819 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.93 13.97 21.65 0.30 -58.62 16 2 C -0.02 -0.90 5.30 84.86 0.45 -0.45 16 3 Si 0.94 44.33 25.08 68.60 1.72 46.05 16 4 H -0.27 -11.73 6.69 99.48 0.67 -11.07 16 5 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 6 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.26 -14.37 8.96 84.04 0.75 -13.62 16 8 H 0.04 2.73 6.86 -2.91 -0.02 2.71 16 9 N -0.58 -26.13 2.39 -678.04 -1.62 -27.76 16 10 C 0.13 5.13 4.66 86.38 0.40 5.54 16 11 C 0.12 4.47 6.00 86.38 0.52 4.99 16 12 N -0.70 -22.32 5.55 -466.18 -2.59 -24.90 16 13 C 0.56 18.84 5.95 86.72 0.52 19.36 16 14 O -0.56 -23.66 17.11 -3.96 -0.07 -23.73 16 15 C -0.15 -3.67 5.64 -20.04 -0.11 -3.79 16 16 C 0.13 2.35 7.29 22.67 0.17 2.52 16 17 F -0.13 -2.62 16.83 44.97 0.76 -1.87 16 18 C -0.09 -0.76 10.01 22.28 0.22 -0.54 16 19 C -0.07 -0.54 10.01 22.35 0.22 -0.31 16 20 C 0.10 1.63 7.26 22.35 0.16 1.79 16 21 F -0.12 -2.24 16.83 44.97 0.76 -1.48 16 22 C -0.04 -0.99 6.36 22.64 0.14 -0.85 16 23 Cl -0.04 -1.32 27.70 -2.72 -0.08 -1.40 16 24 C 0.10 3.77 6.56 44.99 0.30 4.07 16 25 C -0.19 -6.92 9.80 30.62 0.30 -6.62 16 26 C -0.21 -7.09 10.36 30.62 0.32 -6.77 16 27 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.04 1.85 3.40 -2.39 -0.01 1.84 16 29 H 0.09 2.75 8.07 -2.39 -0.02 2.73 16 30 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.41 10.64 8.46 -92.71 -0.78 9.85 16 33 H 0.21 -0.04 8.06 -2.92 -0.02 -0.07 16 34 H 0.21 -0.21 8.06 -2.91 -0.02 -0.24 16 35 H 0.13 3.86 8.14 -2.39 -0.02 3.85 16 36 H 0.07 2.97 6.44 -2.39 -0.02 2.95 16 37 H 0.11 3.30 8.14 -2.38 -0.02 3.29 16 38 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -76.65 357.01 3.84 -72.82 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.30 Total: 15.58 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 4.36 Total: 5.31 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.91 Total: -111.28 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.07 Total: -23.73 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 1.51 Total: -3.35 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.72 Total: 46.05 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -76.65 3.84 -72.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663756727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.284 kcal (2) G-P(sol) polarization free energy of solvation -76.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds