Wall clock time and date at job start Wed Apr 1 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46862 * 2 1 4 4 N 1.46508 * 109.46766 * 119.99497 * 2 1 3 5 5 C 1.34776 * 120.00074 * 274.99895 * 4 2 1 6 6 O 1.21282 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99858 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47173 * 180.02562 * 7 5 4 9 9 C 1.76202 * 100.00166 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99950 * 0.02562 * 9 8 7 11 11 C 1.38795 * 119.99812 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00438 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99898 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46943 * 90.00042 * 13 11 9 15 15 H 1.48502 * 109.47351 * 210.00411 * 13 11 9 16 16 H 1.48508 * 109.46922 * 330.00264 * 13 11 9 17 17 C 1.52991 * 109.47169 * 239.99665 * 2 1 3 18 18 H 1.09003 * 109.47227 * 299.99491 * 17 2 1 19 19 C 1.53006 * 109.46964 * 180.02562 * 17 2 1 20 20 N 1.46498 * 109.47383 * 60.00246 * 17 2 1 21 21 C 1.34776 * 120.00039 * 205.00118 * 20 17 2 22 22 O 1.21600 * 120.00162 * 359.97438 * 21 20 17 23 23 C 1.47452 * 119.99856 * 179.97438 * 21 20 17 24 24 C 1.37979 * 124.15340 * 179.97438 * 23 21 20 25 25 S 1.72093 * 104.03446 * 180.02562 * 24 23 21 26 26 N 1.56404 * 96.15522 * 0.02562 * 25 24 23 27 27 N 1.27424 * 109.87417 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.46630 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47117 * 299.99856 * 1 2 3 30 30 H 1.08998 * 109.46848 * 60.00287 * 1 2 3 31 31 H 0.96996 * 119.99582 * 95.00746 * 4 2 1 32 32 H 1.09001 * 109.47026 * 300.00343 * 7 5 4 33 33 H 1.08996 * 109.47455 * 60.00184 * 7 5 4 34 34 H 0.97001 * 120.00125 * 180.02562 * 12 11 9 35 35 H 1.08998 * 109.47724 * 59.99915 * 19 17 2 36 36 H 1.08998 * 109.46912 * 180.02562 * 19 17 2 37 37 H 1.09008 * 109.46907 * 299.99500 * 19 17 2 38 38 H 0.96996 * 119.99617 * 24.99265 * 20 17 2 39 39 H 1.08001 * 127.98074 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6498 -0.7283 3.5876 8 16 2.7098 0.4346 4.9733 9 6 3.3130 -0.6306 6.2407 10 1 3.5232 -1.6668 6.0206 11 6 3.5189 -0.1376 7.5217 12 7 3.2633 1.1255 7.7900 13 14 4.1577 -1.2670 8.8656 14 1 5.6421 -1.2286 8.8803 15 1 3.6377 -0.8147 10.1810 16 1 3.7010 -2.6556 8.6038 17 6 2.0400 -0.7213 -1.2491 18 1 1.6768 -1.7490 -1.2490 19 6 3.5701 -0.7218 -1.2488 20 7 1.5518 -0.0308 -2.4454 21 6 1.4231 -0.7032 -3.6063 22 8 1.7126 -1.8829 -3.6609 23 6 0.9311 -0.0083 -4.8101 24 6 0.7672 -0.6116 -6.0402 25 16 0.1797 0.6522 -7.0498 26 7 0.1809 1.7618 -5.9476 27 7 0.5922 1.2755 -4.8439 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6317 1.1528 32 1 1.9776 -1.5506 3.8326 33 1 3.6491 -1.1201 3.3981 34 1 3.4076 1.4700 8.6852 35 1 3.9331 -1.2358 -0.3588 36 1 3.9334 -1.2353 -2.1389 37 1 3.9338 0.3058 -1.2487 38 1 1.3210 0.9103 -2.4018 39 1 0.9624 -1.6396 -6.3075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677876194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:16 Heat of formation + Delta-G solvation = -4.612975 kcal Electronic energy + Delta-G solvation = -24201.592742 eV Core-core repulsion = 20398.273607 eV Total energy + Delta-G solvation = -3803.319134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62564 -40.14681 -39.22356 -36.90796 -34.19732 -32.76574 -32.43329 -31.25852 -30.18286 -28.53094 -27.60530 -25.49195 -24.90037 -23.58156 -21.48746 -21.09253 -20.49170 -19.73385 -17.98700 -17.31831 -16.83926 -16.55327 -16.33236 -15.75630 -15.68880 -15.16524 -14.97292 -14.80627 -14.45738 -14.09036 -13.92460 -13.60626 -13.23871 -13.15763 -12.75879 -12.68442 -12.51309 -12.46359 -12.02030 -11.86473 -11.56365 -11.06796 -11.03015 -10.97863 -10.92060 -10.76428 -10.67445 -10.64662 -10.48574 -9.82388 -9.62839 -9.43440 -9.07712 -8.96090 -8.24638 -6.50676 -6.22180 -3.92812 -0.49835 0.35247 0.90721 0.97519 2.45921 2.64720 3.04607 3.07341 3.22224 3.25847 3.29318 3.35591 3.73034 4.11885 4.19814 4.22393 4.39693 4.68881 4.76518 4.90651 5.09709 5.13105 5.25879 5.28921 5.43906 5.52781 5.61552 5.66081 5.83564 5.87508 5.96900 6.03323 6.12486 6.14760 6.56827 6.79414 7.08343 7.59105 7.60534 7.64796 8.34741 8.56766 9.23284 10.85188 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.039305 B = 0.001711 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.209088 B =16358.538949 C =16754.844605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.731 5.731 5 C 0.536 3.464 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.136 3.864 18 H 0.098 0.902 19 C -0.165 4.165 20 N -0.699 5.699 21 C 0.609 3.391 22 O -0.523 6.523 23 C -0.023 4.023 24 C -0.236 4.236 25 S 0.466 5.534 26 N -0.287 5.287 27 N -0.210 5.210 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.268 0.732 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 -5.490 -31.782 32.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.113 0.887 4 N -0.386 5.386 5 C 0.322 3.678 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C 0.031 3.969 18 H 0.116 0.884 19 C -0.223 4.223 20 N -0.351 5.351 21 C 0.390 3.610 22 O -0.398 6.398 23 C -0.171 4.171 24 C -0.393 4.393 25 S 0.602 5.398 26 N -0.268 5.268 27 N -0.080 5.080 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -6.295 -2.545 -32.270 32.977 hybrid contribution 1.270 -3.316 1.614 3.900 sum -5.026 -5.860 -30.656 31.613 Atomic orbital electron populations 1.22209 0.94825 1.02408 1.02892 1.20994 0.94501 0.97884 0.83458 0.88685 1.45932 1.69623 1.13940 1.09070 1.20303 0.76723 0.87201 0.83582 1.90708 1.48089 1.15722 1.84276 1.23534 1.03727 1.04912 0.98255 1.85399 1.86321 1.12829 0.98730 1.22868 1.50978 0.98189 0.96371 0.90909 1.24989 0.95087 0.95543 0.97953 1.70015 1.45454 1.13237 1.21566 0.86172 0.79000 0.80200 0.80146 1.20274 1.20753 1.19696 1.21262 0.94980 0.97624 0.83028 0.88449 1.22193 0.94045 1.03062 1.02979 1.45761 1.65799 1.14824 1.08691 1.16570 0.77700 0.85552 0.81213 1.90857 1.50196 1.14487 1.84219 1.22655 1.07085 0.90409 0.96927 1.28917 1.04605 1.09232 0.96596 1.81635 1.43885 0.93596 1.20713 1.78676 1.21709 1.25758 1.00610 1.71546 1.10427 1.10139 1.15896 0.92362 0.91148 0.91853 0.76657 0.89150 0.89144 0.92179 0.90714 0.91856 0.91874 0.75079 0.77349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.33 37.16 0.35 -1.41 16 2 C 0.14 1.49 2.21 -67.93 -0.15 1.34 16 3 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.73 -8.99 4.38 -53.80 -0.24 -9.22 16 5 C 0.54 9.46 7.81 -10.99 -0.09 9.37 16 6 O -0.51 -11.13 15.53 5.56 0.09 -11.04 16 7 C -0.15 -3.00 6.16 36.00 0.22 -2.77 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 10 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 13 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 17 C 0.14 1.23 2.20 -67.93 -0.15 1.08 16 18 H 0.10 0.91 7.58 -51.93 -0.39 0.51 16 19 C -0.16 -1.50 9.33 37.16 0.35 -1.15 16 20 N -0.70 -6.10 4.38 -54.87 -0.24 -6.34 16 21 C 0.61 5.90 7.78 -12.51 -0.10 5.80 16 22 O -0.52 -6.23 16.46 5.28 0.09 -6.14 16 23 C -0.02 -0.19 6.87 -83.78 -0.58 -0.77 16 24 C -0.24 -1.29 11.21 30.64 0.34 -0.94 16 25 S 0.47 1.95 23.38 -107.50 -2.51 -0.56 16 26 N -0.29 -2.37 12.49 60.35 0.75 -1.61 16 27 N -0.21 -1.92 11.24 32.73 0.37 -1.56 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.58 7.44 -51.93 -0.39 0.20 16 31 H 0.40 3.83 8.39 -40.82 -0.34 3.49 16 32 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 33 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.07 0.66 7.44 -51.93 -0.39 0.27 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.41 3.30 7.97 -40.82 -0.33 2.98 16 39 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -36.15 369.83 -6.96 -43.11 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.73 Total: 2.91 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 0.40 Total: -2.31 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 1.38 Total: -44.04 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.17 Total: -17.18 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -4.72 Total: -4.36 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.15 -6.96 -43.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677876194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.497 kcal (2) G-P(sol) polarization free energy of solvation -36.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds