Wall clock time and date at job start Wed Apr 1 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47446 * 2 1 4 4 C 1.52997 * 109.47138 * 239.99866 * 2 1 3 5 5 N 1.46497 * 109.47282 * 184.99713 * 4 2 1 6 6 C 1.34782 * 120.00148 * 179.97438 * 5 4 2 7 7 O 1.21622 * 119.99653 * 0.02562 * 6 5 4 8 8 C 1.47171 * 120.00184 * 180.02562 * 6 5 4 9 9 C 1.38241 * 128.47609 * 179.97438 * 8 6 5 10 10 N 1.31242 * 111.88701 * 179.73439 * 9 8 6 11 11 N 1.27337 * 120.04085 * 0.24773 * 10 9 8 12 12 S 1.56636 * 109.73928 * 359.97438 * 11 10 9 13 13 N 1.46507 * 109.47474 * 119.99744 * 2 1 3 14 14 C 1.46501 * 119.99630 * 60.00123 * 13 2 1 15 15 C 1.34773 * 119.99983 * 240.00079 * 13 2 1 16 16 O 1.21278 * 120.00334 * 359.97438 * 15 13 2 17 17 C 1.50698 * 119.99750 * 179.97438 * 15 13 2 18 18 S 1.81002 * 109.47357 * 180.02562 * 17 15 13 19 19 C 1.76196 * 99.99995 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00570 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99650 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99882 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47008 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47230 * 120.00235 * 23 21 19 26 26 H 1.48502 * 109.47017 * 239.99952 * 23 21 19 27 27 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47376 * 299.99888 * 1 2 3 29 29 H 1.08995 * 109.47560 * 59.99885 * 1 2 3 30 30 H 1.09004 * 109.46949 * 65.00386 * 4 2 1 31 31 H 1.09001 * 109.47287 * 304.99985 * 4 2 1 32 32 H 0.97005 * 119.99940 * 0.02562 * 5 4 2 33 33 H 1.08002 * 124.05835 * 0.02562 * 9 8 6 34 34 H 1.08996 * 109.47152 * 89.99761 * 14 13 2 35 35 H 1.08993 * 109.46844 * 210.00171 * 14 13 2 36 36 H 1.09008 * 109.46862 * 330.00009 * 14 13 2 37 37 H 1.09004 * 109.47357 * 300.00040 * 17 15 13 38 38 H 1.08999 * 109.47432 * 59.99868 * 17 15 13 39 39 H 0.97002 * 119.99581 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8263 -1.1906 6 6 4.1729 -1.4292 -2.1907 7 8 3.5681 -1.8855 -3.1421 8 6 5.6396 -1.5353 -2.1316 9 6 6.4980 -2.1116 -3.0492 10 7 7.7515 -2.0192 -2.6717 11 7 8.0454 -1.4521 -1.5701 12 16 6.7376 -0.9561 -0.8651 13 7 2.0184 -0.6906 1.1962 14 6 1.6645 -2.0932 1.4280 15 6 2.7932 -0.0355 2.0833 16 8 3.0866 1.1255 1.8911 17 6 3.2951 -0.7457 3.3140 18 16 4.3002 0.3921 4.2996 19 6 4.7417 -0.6684 5.6356 20 1 4.3914 -1.6899 5.6528 21 6 5.5408 -0.1914 6.6654 22 7 5.9690 1.0531 6.6437 23 14 6.0095 -1.3159 8.0815 24 1 5.4064 -2.6563 7.8696 25 1 7.4877 -1.4430 8.1442 26 1 5.5075 -0.7424 9.3560 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.7516 -0.1583 -2.1369 31 1 1.6053 -1.7198 -1.2951 32 1 3.9823 -0.4627 -0.4316 33 1 6.1761 -2.5775 -3.9689 34 1 2.4157 -2.7376 0.9717 35 1 1.6239 -2.2851 2.5002 36 1 0.6904 -2.3002 0.9847 37 1 2.4471 -1.0879 3.9073 38 1 3.9005 -1.6024 3.0178 39 1 6.5271 1.3866 7.3636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678092420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:56 Heat of formation + Delta-G solvation = 7.816774 kcal Electronic energy + Delta-G solvation = -25109.219551 eV Core-core repulsion = 21306.439411 eV Total energy + Delta-G solvation = -3802.780140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.08946 -40.32197 -39.39768 -36.69516 -34.54196 -32.64191 -32.49936 -32.00477 -28.89682 -28.26988 -27.03822 -26.35030 -25.55869 -23.08512 -21.84230 -20.89246 -19.58012 -19.23999 -17.86387 -17.77756 -17.10575 -16.54917 -16.19680 -15.81942 -15.63790 -15.23773 -14.98724 -14.86739 -14.49635 -14.24570 -13.57889 -13.38115 -13.30300 -13.12576 -12.95232 -12.67154 -12.50760 -12.38959 -12.20395 -12.10457 -11.93293 -11.23816 -11.12584 -11.09056 -10.81514 -10.66396 -10.39805 -10.37216 -10.11445 -9.87463 -9.61408 -9.45510 -9.14215 -8.78726 -8.32732 -6.59417 -6.29145 -4.00536 -0.53383 0.56861 1.24487 1.69307 2.55616 2.63665 2.77389 2.81919 3.16762 3.20314 3.26077 3.47842 3.75021 4.12926 4.28430 4.36305 4.43192 4.70218 4.89834 4.91663 4.96212 5.06726 5.19533 5.25737 5.30216 5.31270 5.38869 5.46131 5.59775 5.74409 5.77378 5.83489 5.96371 6.01637 6.44229 6.94816 7.29958 7.37361 7.53097 7.64676 8.28038 8.32883 9.16956 10.78180 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003602 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.050034 B = 7771.802805 C = 9976.768798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 H 0.112 0.888 4 C 0.112 3.888 5 N -0.715 5.715 6 C 0.606 3.394 7 O -0.522 6.522 8 C -0.303 4.303 9 C 0.075 3.925 10 N -0.257 5.257 11 N -0.255 5.255 12 S 0.456 5.544 13 N -0.622 5.622 14 C 0.076 3.924 15 C 0.531 3.469 16 O -0.513 6.513 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.866 5.866 23 Si 0.917 3.083 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.405 0.595 33 H 0.215 0.785 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -6.147 -16.771 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.130 0.870 4 C -0.012 4.012 5 N -0.367 5.367 6 C 0.389 3.611 7 O -0.399 6.399 8 C -0.444 4.444 9 C -0.092 4.092 10 N -0.120 5.120 11 N -0.236 5.236 12 S 0.591 5.409 13 N -0.359 5.359 14 C -0.067 4.067 15 C 0.319 3.681 16 O -0.387 6.387 17 C -0.303 4.303 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.134 4.134 22 N -0.501 5.501 23 Si 0.743 3.257 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.241 0.759 33 H 0.231 0.769 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.836 -4.154 -16.529 18.363 hybrid contribution -0.809 -2.494 0.544 2.678 sum -7.645 -6.648 -15.985 18.926 Atomic orbital electron populations 1.22050 0.93479 1.02779 1.03284 1.21318 0.95139 0.98628 0.83196 0.87032 1.21874 0.78782 1.01984 0.98568 1.45829 1.08545 1.59127 1.23183 1.16427 0.83479 0.78382 0.82810 1.90840 1.68252 1.47884 1.32900 1.28069 1.00895 1.12767 1.02716 1.24454 0.85660 0.97795 1.01339 1.70744 1.18824 1.15025 1.07440 1.78852 1.23344 1.14753 1.06700 1.83254 0.94290 1.41363 1.21954 1.48004 1.52304 1.12751 1.22797 1.21785 1.00733 0.81279 1.02882 1.20477 0.77124 0.86803 0.83690 1.90712 1.56266 1.16264 1.75498 1.23584 1.04452 1.04771 0.97493 1.85386 1.60869 1.15201 1.21793 1.22879 1.37410 0.99716 1.08416 0.90892 1.24976 0.95027 0.95510 0.97909 1.70017 1.33088 1.14353 1.32688 0.86142 0.78392 0.80124 0.81004 1.19614 1.20525 1.20532 0.91889 0.91217 0.91025 0.89762 0.90496 0.75893 0.76901 0.92797 0.90373 0.90991 0.89096 0.89239 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.17 37.15 0.34 -0.76 16 2 C 0.12 1.12 2.80 -67.93 -0.19 0.93 16 3 H 0.11 1.24 6.90 -51.93 -0.36 0.88 16 4 C 0.11 0.95 4.97 -4.05 -0.02 0.93 16 5 N -0.71 -7.23 5.38 -61.47 -0.33 -7.56 16 6 C 0.61 6.78 7.80 -12.63 -0.10 6.68 16 7 O -0.52 -6.95 16.98 5.26 0.09 -6.86 16 8 C -0.30 -3.22 6.81 -35.96 -0.25 -3.47 16 9 C 0.08 0.77 11.55 -17.80 -0.21 0.57 16 10 N -0.26 -3.17 11.54 30.36 0.35 -2.82 16 11 N -0.25 -3.31 12.51 60.35 0.75 -2.56 16 12 S 0.46 5.04 23.05 -107.50 -2.48 2.57 16 13 N -0.62 -6.88 2.24 -173.94 -0.39 -7.27 16 14 C 0.08 0.64 9.40 59.85 0.56 1.21 16 15 C 0.53 8.41 7.40 -10.99 -0.08 8.33 16 16 O -0.51 -9.89 15.19 5.56 0.08 -9.80 16 17 C -0.15 -2.74 4.71 36.00 0.17 -2.57 16 18 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 19 C -0.54 -14.45 9.50 30.94 0.29 -14.16 16 20 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 21 C 0.08 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.11 13.22 55.49 0.73 -24.38 16 23 Si 0.92 20.67 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.06 0.37 6.66 -51.93 -0.35 0.02 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.61 7.84 -51.93 -0.41 0.21 16 32 H 0.41 4.36 7.30 -40.82 -0.30 4.06 16 33 H 0.21 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.69 6.44 -51.93 -0.33 0.35 16 36 H 0.07 0.45 6.43 -51.92 -0.33 0.12 16 37 H 0.09 1.53 7.40 -51.91 -0.38 1.15 16 38 H 0.09 1.47 8.11 -51.92 -0.42 1.05 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -33.98 364.98 -7.03 -41.01 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.54 Total: 0.57 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 0.43 Total: -0.35 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 1.12 Total: -44.58 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.17 Total: -16.66 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -4.69 Total: -1.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.98 -7.03 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678092420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.825 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds