Wall clock time and date at job start Wed Apr 1 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46793 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99612 * 2 1 3 5 5 N 1.46499 * 109.46840 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21618 * 120.00191 * 0.02562 * 6 5 4 8 8 C 1.47177 * 120.00007 * 180.02562 * 6 5 4 9 9 C 1.38240 * 128.47530 * 180.02562 * 8 6 5 10 10 N 1.31240 * 111.88861 * 179.97438 * 9 8 6 11 11 N 1.27337 * 120.03918 * 0.02562 * 10 9 8 12 12 S 1.56641 * 109.73829 * 359.69478 * 11 10 9 13 13 N 1.46496 * 109.47348 * 239.99940 * 2 1 3 14 14 C 1.46502 * 119.99746 * 300.00436 * 13 2 1 15 15 C 1.34775 * 120.00119 * 120.00113 * 13 2 1 16 16 O 1.21278 * 120.00293 * 359.97438 * 15 13 2 17 17 C 1.50705 * 119.99839 * 180.02562 * 15 13 2 18 18 S 1.81002 * 109.46951 * 180.02562 * 17 15 13 19 19 C 1.76201 * 99.99676 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00463 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99672 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00266 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47387 * 60.00003 * 23 21 19 25 25 H 1.48507 * 109.47257 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46990 * 299.99950 * 23 21 19 27 27 H 1.09000 * 109.47312 * 300.00425 * 1 2 3 28 28 H 1.09004 * 109.46964 * 60.00223 * 1 2 3 29 29 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 33 33 H 1.07999 * 124.05474 * 0.02562 * 9 8 6 34 34 H 1.08992 * 109.47467 * 89.99804 * 14 13 2 35 35 H 1.08998 * 109.47217 * 210.00148 * 14 13 2 36 36 H 1.09000 * 109.47078 * 329.99354 * 14 13 2 37 37 H 1.08994 * 109.46670 * 299.99876 * 17 15 13 38 38 H 1.08996 * 109.47004 * 59.99920 * 17 15 13 39 39 H 0.96996 * 120.00452 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4291 2.1908 7 8 3.5680 -1.8861 3.1418 8 6 5.6397 -1.5343 2.1322 9 6 6.4981 -2.1104 3.0500 10 7 7.7512 -2.0226 2.6700 11 7 8.0452 -1.4548 1.5688 12 16 6.7372 -0.9596 0.8633 13 7 2.0184 -0.6906 -1.1961 14 6 1.6644 -2.0932 -1.4279 15 6 2.7933 -0.0356 -2.0832 16 8 3.0859 1.1256 -1.8916 17 6 3.2952 -0.7460 -3.3140 18 16 4.3015 0.3914 -4.2988 19 6 4.7441 -0.6696 -5.6341 20 1 4.3935 -1.6909 -5.6514 21 6 5.5442 -0.1930 -6.6632 22 7 5.9720 1.0517 -6.6419 23 14 6.0129 -1.3175 -8.0793 24 1 4.7832 -1.7850 -8.7681 25 1 6.8658 -0.5736 -9.0408 26 1 6.7618 -2.4877 -7.5550 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7515 -0.1582 2.1370 31 1 1.6053 -1.7197 1.2953 32 1 3.9824 -0.4622 0.4320 33 1 6.1760 -2.5775 3.9689 34 1 0.7376 -2.1444 -1.9992 35 1 2.4628 -2.5819 -1.9862 36 1 1.5295 -2.5968 -0.4707 37 1 3.9005 -1.6025 -3.0176 38 1 2.4472 -1.0881 -3.9072 39 1 6.5309 1.3849 -7.3613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678092421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:00 Heat of formation + Delta-G solvation = 7.788177 kcal Electronic energy + Delta-G solvation = -25109.014749 eV Core-core repulsion = 21306.233369 eV Total energy + Delta-G solvation = -3802.781380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09287 -40.32884 -39.39918 -36.69929 -34.53728 -32.64283 -32.49713 -32.00601 -28.89732 -28.27508 -27.00699 -26.37824 -25.55400 -23.09249 -21.84113 -20.89569 -19.58087 -19.24304 -17.86563 -17.77846 -17.11239 -16.54952 -16.20418 -15.80697 -15.69817 -15.20834 -14.97711 -14.86322 -14.48077 -14.24221 -13.58591 -13.36919 -13.28990 -13.07381 -12.95511 -12.71551 -12.48830 -12.40497 -12.21414 -12.12825 -11.91354 -11.26622 -11.11186 -11.09200 -10.82554 -10.66802 -10.40059 -10.37462 -10.11729 -9.89197 -9.60101 -9.46726 -9.12469 -8.78412 -8.33482 -6.59287 -6.28500 -4.00226 -0.53646 0.56632 1.24249 1.69053 2.55096 2.63148 2.76867 2.82516 3.18775 3.20070 3.24540 3.47600 3.74791 4.13511 4.28292 4.36207 4.43034 4.68400 4.89956 4.90608 4.96451 5.07074 5.19294 5.25751 5.28118 5.35579 5.38190 5.47372 5.60181 5.73823 5.78867 5.82769 5.95780 6.01609 6.44045 6.94315 7.29889 7.37139 7.52699 7.64105 8.27910 8.32896 9.17187 10.78718 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.003604 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.891316 B = 7768.170497 C = 9974.322381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 H 0.112 0.888 4 C 0.111 3.889 5 N -0.715 5.715 6 C 0.606 3.394 7 O -0.522 6.522 8 C -0.303 4.303 9 C 0.075 3.925 10 N -0.257 5.257 11 N -0.255 5.255 12 S 0.456 5.544 13 N -0.622 5.622 14 C 0.077 3.923 15 C 0.531 3.469 16 O -0.513 6.513 17 C -0.153 4.153 18 S -0.058 6.058 19 C -0.538 4.538 20 H 0.072 0.928 21 C 0.076 3.924 22 N -0.867 5.867 23 Si 0.917 3.083 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.405 0.595 33 H 0.215 0.785 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 -6.185 16.845 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 H 0.130 0.870 4 C -0.013 4.013 5 N -0.367 5.367 6 C 0.389 3.611 7 O -0.399 6.399 8 C -0.445 4.445 9 C -0.092 4.092 10 N -0.120 5.120 11 N -0.236 5.236 12 S 0.592 5.408 13 N -0.359 5.359 14 C -0.066 4.066 15 C 0.319 3.681 16 O -0.387 6.387 17 C -0.303 4.303 18 S 0.168 5.832 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.134 4.134 22 N -0.502 5.502 23 Si 0.743 3.257 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.241 0.759 33 H 0.231 0.769 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.667 -4.191 16.594 18.368 hybrid contribution -0.841 -2.497 -0.550 2.692 sum -7.507 -6.689 16.044 18.935 Atomic orbital electron populations 1.22036 0.93424 1.02800 1.03207 1.21318 0.95186 0.98630 0.83130 0.87031 1.21879 0.78793 1.02023 0.98633 1.45829 1.08524 1.59123 1.23218 1.16426 0.83483 0.78380 0.82796 1.90840 1.68258 1.47861 1.32916 1.28067 1.00891 1.12873 1.02626 1.24453 0.85673 0.97776 1.01343 1.70743 1.18832 1.14999 1.07457 1.78854 1.23332 1.14711 1.06747 1.83255 0.94294 1.41501 1.21799 1.48003 1.52292 1.12734 1.22830 1.21775 1.01498 0.81396 1.01964 1.20480 0.77114 0.86849 0.83659 1.90712 1.56293 1.16258 1.75477 1.23585 1.04538 1.04710 0.97476 1.85381 1.60694 1.15228 1.21869 1.22798 1.37492 0.99677 1.08598 0.90996 1.24967 0.95017 0.95505 0.97873 1.69990 1.32983 1.14343 1.32848 0.86253 0.78595 0.80070 0.80777 1.19927 1.20768 1.19912 0.91093 0.91264 0.91948 0.89696 0.90450 0.75880 0.76903 0.92381 0.90535 0.91270 0.89235 0.89110 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.19 37.16 0.34 -0.77 16 2 C 0.12 1.12 2.80 -67.93 -0.19 0.93 16 3 H 0.11 1.24 6.90 -51.92 -0.36 0.88 16 4 C 0.11 0.93 4.92 -4.04 -0.02 0.91 16 5 N -0.71 -7.16 5.38 -61.46 -0.33 -7.49 16 6 C 0.61 6.72 7.80 -12.63 -0.10 6.63 16 7 O -0.52 -6.90 16.98 5.26 0.09 -6.82 16 8 C -0.30 -3.20 6.81 -35.95 -0.25 -3.45 16 9 C 0.08 0.77 11.55 -17.80 -0.21 0.56 16 10 N -0.26 -3.16 11.54 30.36 0.35 -2.81 16 11 N -0.25 -3.30 12.51 60.35 0.75 -2.55 16 12 S 0.46 5.02 23.05 -107.50 -2.48 2.54 16 13 N -0.62 -6.88 2.24 -173.93 -0.39 -7.27 16 14 C 0.08 0.65 9.30 59.85 0.56 1.20 16 15 C 0.53 8.41 7.40 -10.98 -0.08 8.33 16 16 O -0.51 -9.89 15.19 5.56 0.08 -9.80 16 17 C -0.15 -2.74 4.71 36.01 0.17 -2.57 16 18 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 19 C -0.54 -14.49 9.50 30.94 0.29 -14.20 16 20 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 21 C 0.08 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.13 13.22 55.49 0.73 -24.39 16 23 Si 0.92 20.66 29.55 -169.99 -5.02 15.63 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.61 6.88 -51.93 -0.36 0.25 16 32 H 0.41 4.32 7.30 -40.82 -0.30 4.03 16 33 H 0.21 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.67 6.44 -51.93 -0.33 0.34 16 36 H 0.07 0.46 6.53 -51.93 -0.34 0.12 16 37 H 0.09 1.46 7.40 -51.92 -0.38 1.08 16 38 H 0.09 1.54 8.11 -51.92 -0.42 1.12 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -33.91 365.00 -7.04 -40.95 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.55 Total: 0.61 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 0.43 Total: -0.43 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 1.12 Total: -44.51 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.17 Total: -16.62 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -4.69 Total: -1.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.91 -7.04 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678092421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.742 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds