Wall clock time and date at job start Wed Apr 1 2020 03:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47586 * 269.99647 * 3 2 1 5 5 H 1.48505 * 109.47293 * 30.00591 * 3 2 1 6 6 H 1.48505 * 109.46772 * 149.99896 * 3 2 1 7 7 C 1.38801 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.85054 * 45.33091 * 11 10 9 13 13 C 1.53782 * 113.61871 * 176.53036 * 11 10 9 14 14 C 1.53777 * 87.08471 * 139.98088 * 13 11 10 15 15 H 1.08998 * 113.61534 * 219.93654 * 14 13 11 16 16 N 1.46504 * 113.61451 * 89.11461 * 14 13 11 17 17 C 1.34773 * 119.99838 * 154.99623 * 16 14 13 18 18 O 1.21591 * 120.00111 * 0.02562 * 17 16 14 19 19 C 1.47575 * 120.00067 * 179.97438 * 17 16 14 20 20 C 1.39739 * 120.13375 * 359.72977 * 19 17 16 21 21 C 1.37746 * 119.92281 * 179.71307 * 20 19 17 22 22 C 1.38739 * 120.20170 * 0.54342 * 21 20 19 23 23 F 1.35101 * 119.85772 * 179.73977 * 22 21 20 24 24 C 1.38577 * 120.27965 * 359.75360 * 22 21 20 25 25 Cl 1.73590 * 119.96811 * 179.97438 * 24 22 21 26 26 C 1.38304 * 120.06816 * 359.96041 * 24 22 21 27 27 F 1.35099 * 120.09827 * 180.02562 * 26 24 22 28 28 C 1.53785 * 113.61570 * 274.13670 * 11 10 9 29 29 H 0.97010 * 119.99864 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 33 33 H 1.09011 * 113.61074 * 254.53256 * 13 11 10 34 34 H 1.09002 * 113.61126 * 25.42909 * 13 11 10 35 35 H 0.97000 * 119.99889 * 335.00540 * 16 14 13 36 36 H 1.07997 * 120.03987 * 359.97438 * 20 19 17 37 37 H 1.07998 * 119.89772 * 180.25512 * 21 20 19 38 38 H 1.09000 * 113.61195 * 334.56762 * 28 11 10 39 39 H 1.09001 * 113.61520 * 105.46896 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0009 12 1 5.9035 -1.4203 0.7142 13 6 6.4791 -3.4615 0.0832 14 6 7.4197 -2.7954 -0.9348 15 1 7.8050 -3.4826 -1.6880 16 7 8.4694 -1.9804 -0.3182 17 6 9.6234 -1.7567 -0.9774 18 8 9.7932 -2.2310 -2.0840 19 6 10.6806 -0.9353 -0.3565 20 6 10.4858 -0.3833 0.9124 21 6 11.4778 0.3778 1.4903 22 6 12.6659 0.6077 0.8116 23 9 13.6321 1.3596 1.3828 24 6 12.8655 0.0695 -0.4497 25 17 14.3549 0.3628 -1.2918 26 6 11.8795 -0.7014 -1.0382 27 9 12.0737 -1.2268 -2.2676 28 6 6.2035 -1.9775 -1.4061 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3620 0.0004 31 1 3.8485 -3.0433 0.8881 32 1 3.8492 -3.0414 -0.8919 33 1 6.9339 -3.6163 1.0618 34 1 5.9822 -4.3529 -0.2996 35 1 8.3338 -1.6018 0.5646 36 1 9.5603 -0.5568 1.4411 37 1 11.3285 0.8008 2.4727 38 1 5.6311 -2.4624 -2.1968 39 1 6.4361 -0.9360 -1.6283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700640212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:30 Heat of formation + Delta-G solvation = -63.203674 kcal Electronic energy + Delta-G solvation = -26556.997770 eV Core-core repulsion = 22162.961109 eV Total energy + Delta-G solvation = -4394.036662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.77760 -49.51217 -40.78225 -39.40824 -38.25237 -37.20362 -34.82429 -33.54608 -31.60117 -31.34864 -30.96701 -27.34549 -25.69429 -24.92186 -23.95020 -23.09970 -21.52526 -21.39976 -19.48035 -19.00253 -18.38831 -17.95956 -17.56178 -16.87215 -16.51333 -16.19343 -15.98786 -15.85544 -15.15591 -15.14166 -15.02752 -14.57113 -14.36315 -14.11341 -13.70328 -13.49831 -13.31118 -13.23542 -12.72657 -12.58435 -12.49222 -12.40432 -12.17602 -11.87643 -11.71189 -11.47774 -10.93231 -10.73757 -10.36506 -10.32628 -10.23974 -9.95947 -9.63026 -9.60735 -9.57626 -9.23510 -8.90702 -7.24494 -5.78863 -3.14163 -0.26453 0.08868 1.19764 2.01665 2.61544 2.90817 2.92797 3.33310 3.36975 3.42580 3.50412 3.78249 3.90796 4.04985 4.46358 4.55768 4.57909 4.62198 4.78521 4.91185 4.91398 5.00478 5.06782 5.17081 5.50250 5.53023 5.62496 5.72673 5.72980 5.78251 5.88154 6.00197 6.02134 6.16666 6.43357 6.63598 6.76240 7.09338 7.78880 7.97707 8.40397 9.19716 9.92093 10.11990 11.39668 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002273 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.195798 B =12312.878957 C =13193.399340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.120 4.120 12 H 0.086 0.914 13 C -0.135 4.135 14 C 0.115 3.885 15 H 0.105 0.895 16 N -0.701 5.701 17 C 0.562 3.438 18 O -0.517 6.517 19 C -0.171 4.171 20 C -0.022 4.022 21 C -0.158 4.158 22 C 0.166 3.834 23 F -0.112 7.112 24 C -0.132 4.132 25 Cl -0.019 7.019 26 C 0.201 3.799 27 F -0.091 7.091 28 C -0.141 4.141 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.400 0.600 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.096 0.904 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.936 -1.571 3.843 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.139 4.139 12 H 0.104 0.896 13 C -0.173 4.173 14 C 0.010 3.990 15 H 0.123 0.877 16 N -0.352 5.352 17 C 0.348 3.652 18 O -0.393 6.393 19 C -0.176 4.176 20 C -0.041 4.041 21 C -0.177 4.177 22 C 0.146 3.854 23 F -0.090 7.090 24 C -0.161 4.161 25 Cl 0.010 6.990 26 C 0.179 3.821 27 F -0.068 7.068 28 C -0.179 4.179 29 H 0.069 0.931 30 H 0.192 0.808 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.236 0.764 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.114 0.886 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 29.985 -1.985 2.922 30.192 hybrid contribution 0.793 1.656 0.306 1.861 sum 30.778 -0.330 3.228 30.949 Atomic orbital electron populations 1.69708 1.05106 1.25804 1.57652 1.24686 0.95254 0.97234 1.02137 0.86523 0.79057 0.84978 0.77761 1.21097 1.21762 1.20487 1.19072 0.80729 0.94715 1.42865 0.89259 1.42687 1.03979 1.02265 1.91151 1.20616 0.87592 0.89264 0.98601 1.22835 0.96636 0.97221 0.97167 0.89589 1.23303 0.96500 0.98530 0.99009 1.22057 0.86581 0.93548 0.96766 0.87745 1.45533 1.15539 1.53120 1.21007 1.17678 0.81701 0.80477 0.85377 1.90886 1.79687 1.49944 1.18768 1.20110 0.95088 1.05441 0.96969 1.21215 0.98933 0.91900 0.92086 1.21168 0.91686 1.02392 1.02477 1.17305 0.86995 0.91631 0.89511 1.91610 1.61147 1.72568 1.83649 1.20895 0.92579 1.07089 0.95556 1.98428 1.29274 1.94804 1.76517 1.16996 0.91522 0.92172 0.81365 1.91687 1.94675 1.82918 1.37529 1.23494 0.95687 1.00865 0.97903 0.93068 0.80758 0.95524 0.95288 0.91024 0.88241 0.76394 0.82646 0.82055 0.88579 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 21.80 27.74 -169.99 -4.71 17.09 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.76 -17.35 5.41 -59.91 -0.32 -17.68 16 10 C 0.17 2.97 6.08 -4.04 -0.02 2.95 16 11 C -0.12 -1.55 3.62 -89.81 -0.33 -1.88 16 12 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.13 -1.32 7.39 -25.92 -0.19 -1.51 16 14 C 0.12 1.21 4.33 -67.03 -0.29 0.92 16 15 H 0.10 1.20 7.46 -51.93 -0.39 0.81 16 16 N -0.70 -6.35 5.21 -53.96 -0.28 -6.63 16 17 C 0.56 6.23 7.76 -12.45 -0.10 6.13 16 18 O -0.52 -7.80 14.93 5.29 0.08 -7.73 16 19 C -0.17 -1.49 5.88 -104.91 -0.62 -2.11 16 20 C -0.02 -0.12 9.53 -39.20 -0.37 -0.49 16 21 C -0.16 -0.76 10.00 -39.58 -0.40 -1.16 16 22 C 0.17 1.17 7.28 -39.27 -0.29 0.88 16 23 F -0.11 -0.84 16.82 2.25 0.04 -0.80 16 24 C -0.13 -1.15 6.32 -39.43 -0.25 -1.40 16 25 Cl -0.02 -0.17 28.26 -51.86 -1.47 -1.64 16 26 C 0.20 2.00 7.26 -38.94 -0.28 1.72 16 27 F -0.09 -1.12 15.11 2.25 0.03 -1.08 16 28 C -0.14 -1.78 7.44 -25.82 -0.19 -1.97 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.36 8.04 5.53 -40.82 -0.23 7.82 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.53 7.87 -51.93 -0.41 0.12 16 33 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.40 2.48 6.73 -40.82 -0.27 2.21 16 36 H 0.16 0.36 6.40 -52.49 -0.34 0.02 16 37 H 0.16 0.35 8.06 -52.49 -0.42 -0.08 16 38 H 0.10 1.26 7.92 -51.93 -0.41 0.85 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -34.35 354.07 -8.27 -42.62 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.17 Total: 3.86 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.58 Total: -4.91 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.17 Total: -52.75 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.07 Total: -1.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.47 Total: -1.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.35 -8.27 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700640212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.579 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds