Wall clock time and date at job start Wed Apr 1 2020 03:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47586 * 269.99647 * 3 2 1 5 5 H 1.48505 * 109.47293 * 30.00591 * 3 2 1 6 6 H 1.48505 * 109.46772 * 149.99896 * 3 2 1 7 7 C 1.38801 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.85054 * 45.33091 * 11 10 9 13 13 C 1.53782 * 113.61871 * 176.53036 * 11 10 9 14 14 C 1.53777 * 87.08471 * 139.98088 * 13 11 10 15 15 H 1.08998 * 113.61534 * 219.93654 * 14 13 11 16 16 N 1.46504 * 113.61451 * 89.11461 * 14 13 11 17 17 C 1.34773 * 119.99838 * 154.99623 * 16 14 13 18 18 O 1.21591 * 120.00111 * 0.02562 * 17 16 14 19 19 C 1.47575 * 120.00067 * 179.97438 * 17 16 14 20 20 C 1.39739 * 120.13375 * 359.72977 * 19 17 16 21 21 C 1.37746 * 119.92281 * 179.71307 * 20 19 17 22 22 C 1.38739 * 120.20170 * 0.54342 * 21 20 19 23 23 F 1.35101 * 119.85772 * 179.73977 * 22 21 20 24 24 C 1.38577 * 120.27965 * 359.75360 * 22 21 20 25 25 Cl 1.73590 * 119.96811 * 179.97438 * 24 22 21 26 26 C 1.38304 * 120.06816 * 359.96041 * 24 22 21 27 27 F 1.35099 * 120.09827 * 180.02562 * 26 24 22 28 28 C 1.53785 * 113.61570 * 274.13670 * 11 10 9 29 29 H 0.97010 * 119.99864 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 33 33 H 1.09011 * 113.61074 * 254.53256 * 13 11 10 34 34 H 1.09002 * 113.61126 * 25.42909 * 13 11 10 35 35 H 0.97000 * 119.99889 * 335.00540 * 16 14 13 36 36 H 1.07997 * 120.03987 * 359.97438 * 20 19 17 37 37 H 1.07998 * 119.89772 * 180.25512 * 21 20 19 38 38 H 1.09000 * 113.61195 * 334.56762 * 28 11 10 39 39 H 1.09001 * 113.61520 * 105.46896 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0009 12 1 5.9035 -1.4203 0.7142 13 6 6.4791 -3.4615 0.0832 14 6 7.4197 -2.7954 -0.9348 15 1 7.8050 -3.4826 -1.6880 16 7 8.4694 -1.9804 -0.3182 17 6 9.6234 -1.7567 -0.9774 18 8 9.7932 -2.2310 -2.0840 19 6 10.6806 -0.9353 -0.3565 20 6 10.4858 -0.3833 0.9124 21 6 11.4778 0.3778 1.4903 22 6 12.6659 0.6077 0.8116 23 9 13.6321 1.3596 1.3828 24 6 12.8655 0.0695 -0.4497 25 17 14.3549 0.3628 -1.2918 26 6 11.8795 -0.7014 -1.0382 27 9 12.0737 -1.2268 -2.2676 28 6 6.2035 -1.9775 -1.4061 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3620 0.0004 31 1 3.8485 -3.0433 0.8881 32 1 3.8492 -3.0414 -0.8919 33 1 6.9339 -3.6163 1.0618 34 1 5.9822 -4.3529 -0.2996 35 1 8.3338 -1.6018 0.5646 36 1 9.5603 -0.5568 1.4411 37 1 11.3285 0.8008 2.4727 38 1 5.6311 -2.4624 -2.1968 39 1 6.4361 -0.9360 -1.6283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700640212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:30 Heat of formation + Delta-G solvation = -85.964126 kcal Electronic energy + Delta-G solvation = -26557.984738 eV Core-core repulsion = 22162.961109 eV Total energy + Delta-G solvation = -4395.023629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.33240 -50.26498 -41.58574 -40.15375 -39.11534 -37.84091 -36.48091 -34.66471 -33.26870 -31.97295 -31.84751 -28.82660 -26.60610 -25.75586 -24.77556 -24.29595 -22.95259 -22.23089 -20.54397 -19.68278 -19.47901 -18.99849 -18.60734 -17.51654 -17.17475 -17.01065 -16.66694 -16.65079 -16.51464 -16.06978 -15.90324 -15.77471 -15.66493 -15.02465 -14.95235 -14.45383 -14.31501 -14.00712 -13.89754 -13.86262 -13.47905 -13.37023 -13.03359 -12.99800 -12.77215 -12.67302 -12.35953 -12.14153 -11.85567 -11.69600 -11.38696 -11.22527 -11.15589 -10.87959 -10.29510 -10.16464 -9.99425 -9.24944 -8.00806 -5.33717 -0.83964 -0.45278 0.58862 1.38047 1.38258 1.43815 1.50859 1.86983 2.23772 2.35371 2.50624 2.94549 3.27157 3.30607 3.35044 3.49576 3.54735 3.61273 3.88596 3.95993 4.05154 4.15335 4.29460 4.50395 4.56883 4.63341 4.70431 4.76419 4.88935 4.89846 4.92991 5.03136 5.15630 5.25338 5.27476 5.34311 5.65326 5.78893 6.23580 6.38374 7.04802 7.11344 7.88649 8.07624 9.20957 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002273 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.195798 B =12312.878957 C =13193.399340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.070 4.070 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.243 1.243 7 C -0.234 4.234 8 H 0.053 0.947 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.114 4.114 12 H 0.103 0.897 13 C -0.115 4.115 14 C 0.124 3.876 15 H 0.093 0.907 16 N -0.685 5.685 17 C 0.561 3.439 18 O -0.566 6.566 19 C -0.181 4.181 20 C -0.003 4.003 21 C -0.136 4.136 22 C 0.164 3.836 23 F -0.114 7.114 24 C -0.142 4.142 25 Cl -0.031 7.031 26 C 0.175 3.825 27 F -0.115 7.115 28 C -0.148 4.148 29 H 0.257 0.743 30 H 0.366 0.634 31 H 0.027 0.973 32 H 0.021 0.979 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.418 0.582 36 H 0.195 0.805 37 H 0.201 0.799 38 H 0.084 0.916 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.796 -0.546 6.442 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.261 4.261 3 Si 0.786 3.214 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.167 1.167 7 C -0.365 4.365 8 H 0.071 0.929 9 N -0.403 5.403 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.121 0.879 13 C -0.154 4.154 14 C 0.019 3.981 15 H 0.111 0.889 16 N -0.337 5.337 17 C 0.348 3.652 18 O -0.446 6.446 19 C -0.185 4.185 20 C -0.022 4.022 21 C -0.155 4.155 22 C 0.143 3.857 23 F -0.092 7.092 24 C -0.171 4.171 25 Cl -0.002 7.002 26 C 0.153 3.847 27 F -0.093 7.093 28 C -0.186 4.186 29 H 0.066 0.934 30 H 0.200 0.800 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.257 0.743 36 H 0.212 0.788 37 H 0.218 0.782 38 H 0.102 0.898 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 31.894 -0.983 5.564 32.391 hybrid contribution 0.165 1.245 -0.479 1.344 sum 32.059 0.262 5.085 32.461 Atomic orbital electron populations 1.69905 1.07303 1.26674 1.59898 1.25585 0.96181 1.01554 1.02773 0.85351 0.78934 0.79223 0.77920 1.20974 1.22384 1.16673 1.19066 0.83080 0.93340 1.41050 0.92865 1.42702 1.02239 1.04448 1.90878 1.20831 0.90590 0.87119 0.98005 1.22795 0.93103 0.99643 0.97691 0.87914 1.23224 0.94916 0.97054 1.00185 1.21853 0.86239 0.93095 0.96958 0.88857 1.45371 1.14462 1.52431 1.21457 1.18032 0.82348 0.80006 0.84808 1.90867 1.80669 1.52013 1.21056 1.20037 0.93945 1.06164 0.98362 1.21624 1.00232 0.90043 0.90272 1.21595 0.89878 1.00691 1.03319 1.17542 0.87760 0.91369 0.88982 1.91610 1.61518 1.72605 1.83506 1.20986 0.92072 1.07721 0.96326 1.98418 1.29933 1.94879 1.77006 1.17296 0.92776 0.93506 0.81086 1.91618 1.94943 1.83589 1.39157 1.23512 0.96810 1.00692 0.97614 0.93425 0.80040 0.95526 0.96134 0.88162 0.87912 0.74289 0.78833 0.78243 0.89780 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.10 13.97 21.65 0.30 -62.80 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.96 44.24 27.74 68.60 1.90 46.15 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.24 -9.65 6.52 99.48 0.65 -9.00 16 7 C -0.23 -13.18 10.47 84.03 0.88 -12.30 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 9 N -0.76 -33.56 5.41 -343.45 -1.86 -35.41 16 10 C 0.16 5.46 6.08 86.38 0.53 5.99 16 11 C -0.11 -2.57 3.62 -10.27 -0.04 -2.61 16 12 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 13 C -0.12 -1.83 7.39 31.12 0.23 -1.60 16 14 C 0.12 2.30 4.33 45.58 0.20 2.50 16 15 H 0.09 2.03 7.46 -2.39 -0.02 2.01 16 16 N -0.69 -10.12 5.21 -442.88 -2.31 -12.43 16 17 C 0.56 11.49 7.76 86.71 0.67 12.16 16 18 O -0.57 -17.21 14.93 -4.00 -0.06 -17.27 16 19 C -0.18 -2.75 5.88 -20.05 -0.12 -2.87 16 20 C 0.00 -0.02 9.53 22.52 0.21 0.20 16 21 C -0.14 -0.65 10.00 22.27 0.22 -0.43 16 22 C 0.16 1.87 7.28 22.47 0.16 2.04 16 23 F -0.11 -1.44 16.82 44.97 0.76 -0.68 16 24 C -0.14 -2.34 6.32 22.37 0.14 -2.20 16 25 Cl -0.03 -0.56 28.26 -2.72 -0.08 -0.64 16 26 C 0.17 3.41 7.26 22.68 0.16 3.58 16 27 F -0.12 -2.99 15.11 44.97 0.68 -2.31 16 28 C -0.15 -3.45 7.44 31.18 0.23 -3.21 16 29 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 30 H 0.37 15.23 5.53 -92.71 -0.51 14.71 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.02 0.74 7.87 -2.39 -0.02 0.72 16 33 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 35 H 0.42 3.00 6.73 -92.71 -0.62 2.37 16 36 H 0.19 -0.42 6.40 -2.91 -0.02 -0.44 16 37 H 0.20 -0.48 8.06 -2.91 -0.02 -0.50 16 38 H 0.08 2.16 7.92 -2.39 -0.02 2.14 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -79.20 354.07 3.23 -75.96 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -0.06 Total: 11.81 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 3.96 Total: -2.38 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.86 Total: -110.64 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.06 Total: -17.27 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 1.44 Total: -3.00 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.15 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -79.20 3.23 -75.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700640212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.002 kcal (2) G-P(sol) polarization free energy of solvation -79.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds