Wall clock time and date at job start Wed Apr 1 2020 02:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.34781 * 119.99732 * 274.99921 * 4 2 1 6 6 O 1.21283 * 119.99585 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99747 * 179.97438 * 5 4 2 8 8 S 1.81010 * 109.46802 * 179.97438 * 7 5 4 9 9 C 1.76205 * 99.99832 * 179.97438 * 8 7 5 10 10 H 1.07995 * 119.99715 * 0.02562 * 9 8 7 11 11 C 1.38798 * 120.00013 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99412 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99921 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47091 * 60.00849 * 13 11 9 15 15 H 1.48508 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48490 * 109.47324 * 300.00227 * 13 11 9 17 17 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 18 18 H 1.09000 * 109.47486 * 299.99829 * 17 2 1 19 19 C 1.53006 * 109.46997 * 179.97438 * 17 2 1 20 20 N 1.46505 * 109.47266 * 60.00137 * 17 2 1 21 21 C 1.34771 * 120.00080 * 204.99535 * 20 17 2 22 22 O 1.21627 * 119.99731 * 359.97438 * 21 20 17 23 23 C 1.47170 * 120.00002 * 180.02562 * 21 20 17 24 24 C 1.38247 * 128.47462 * 179.70080 * 23 21 20 25 25 N 1.31245 * 111.88602 * 179.84495 * 24 23 21 26 26 N 1.27337 * 120.03927 * 0.49538 * 25 24 23 27 27 S 1.56639 * 109.73776 * 359.71461 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 32 32 H 1.08998 * 109.47252 * 299.99651 * 7 5 4 33 33 H 1.09004 * 109.47120 * 60.00384 * 7 5 4 34 34 H 0.97000 * 119.99290 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.46866 * 300.00212 * 19 17 2 36 36 H 1.08996 * 109.47261 * 59.99820 * 19 17 2 37 37 H 1.09001 * 109.47377 * 180.02562 * 19 17 2 38 38 H 0.97003 * 119.99519 * 24.99891 * 20 17 2 39 39 H 1.07996 * 124.05611 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8591 1.1586 2.4114 7 6 2.6490 -0.7289 3.5877 8 16 2.7107 0.4344 4.9731 9 6 3.3124 -0.6313 6.2408 10 1 3.5210 -1.6678 6.0209 11 6 3.5191 -0.1383 7.5217 12 7 3.2652 1.1253 7.7894 13 14 4.1576 -1.2679 8.8654 14 1 5.4836 -1.8069 8.4703 15 1 4.2907 -0.5042 10.1322 16 1 3.2056 -2.3903 9.0624 17 6 2.0399 -0.7213 -1.2493 18 1 1.6766 -1.7490 -1.2493 19 6 3.5700 -0.7208 -1.2497 20 7 1.5516 -0.0307 -2.4455 21 6 1.4228 -0.7030 -3.6064 22 8 1.7126 -1.8830 -3.6611 23 6 0.9328 -0.0091 -4.8081 24 6 0.7404 -0.5202 -6.0782 25 7 0.2859 0.3894 -6.9080 26 7 0.0861 1.5797 -6.5020 27 16 0.4522 1.6889 -4.9829 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6318 1.1526 32 1 1.9760 -1.5507 3.8325 33 1 3.6481 -1.1214 3.3985 34 1 3.4093 1.4697 8.6847 35 1 3.9329 0.3070 -1.2499 36 1 3.9338 -1.2343 -0.3597 37 1 3.9333 -1.2342 -2.1399 38 1 1.3209 0.9105 -2.4018 39 1 0.9374 -1.5457 -6.3536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734697279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:52 Heat of formation + Delta-G solvation = -1.894564 kcal Electronic energy + Delta-G solvation = -24136.159482 eV Core-core repulsion = 20332.958227 eV Total energy + Delta-G solvation = -3803.201255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40920 -40.46504 -39.37127 -37.00199 -34.33986 -32.79809 -32.46488 -31.36589 -30.32171 -28.63730 -27.95784 -25.52392 -24.61203 -23.40574 -21.37088 -21.26345 -20.43988 -19.80395 -18.32684 -17.76344 -16.98397 -16.46697 -16.26628 -15.90971 -15.47325 -15.28625 -15.05642 -14.83603 -14.69871 -14.18061 -14.00149 -13.72221 -13.32234 -13.25852 -12.82890 -12.72061 -12.53525 -12.50044 -12.11867 -11.96610 -11.66177 -11.09075 -11.06857 -11.04436 -10.93129 -10.80268 -10.69599 -10.67302 -10.43595 -9.86968 -9.79993 -9.51370 -9.11038 -9.04414 -8.29606 -6.54715 -6.25400 -3.96421 -0.85748 0.21399 0.89615 1.40413 2.21949 2.39240 2.97334 3.01215 3.21039 3.25290 3.28443 3.44423 3.65257 4.00453 4.10553 4.16948 4.23432 4.57557 4.79026 5.00412 5.02240 5.09937 5.15334 5.17133 5.31417 5.40796 5.52496 5.57664 5.70159 5.82234 5.87733 5.90315 6.02940 6.08371 6.47920 6.70918 7.06190 7.42401 7.55061 7.56896 8.31313 8.48929 9.20071 10.81925 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.001781 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.791214 B =15721.635236 C =16176.423372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 H 0.095 0.905 4 N -0.731 5.731 5 C 0.536 3.464 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.137 3.863 18 H 0.100 0.900 19 C -0.165 4.165 20 N -0.711 5.711 21 C 0.606 3.394 22 O -0.512 6.512 23 C -0.290 4.290 24 C 0.077 3.923 25 N -0.251 5.251 26 N -0.253 5.253 27 S 0.428 5.572 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.269 0.731 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.402 0.598 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 -2.904 -25.752 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 H 0.113 0.887 4 N -0.386 5.386 5 C 0.323 3.677 6 O -0.388 6.388 7 C -0.305 4.305 8 S 0.168 5.832 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.033 3.967 18 H 0.118 0.882 19 C -0.224 4.224 20 N -0.363 5.363 21 C 0.389 3.611 22 O -0.387 6.387 23 C -0.431 4.431 24 C -0.090 4.090 25 N -0.115 5.115 26 N -0.234 5.234 27 S 0.562 5.438 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.237 0.763 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.392 0.113 -26.204 26.753 hybrid contribution 1.138 -3.503 0.978 3.810 sum -4.253 -3.389 -25.226 25.806 Atomic orbital electron populations 1.22219 0.94820 1.02575 1.02783 1.21000 0.94486 0.97872 0.83559 0.88697 1.45930 1.69657 1.13989 1.09019 1.20315 0.76645 0.87193 0.83571 1.90704 1.48107 1.15707 1.84286 1.23538 1.03752 1.04946 0.98234 1.85385 1.86405 1.12722 0.98734 1.22824 1.51186 0.98117 0.96381 0.90945 1.24989 0.95052 0.95546 0.97957 1.70006 1.45420 1.13192 1.21649 0.86223 0.79324 0.80013 0.79942 1.19926 1.20803 1.19935 1.21279 0.95042 0.97714 0.82709 0.88226 1.22200 0.93916 1.03083 1.03168 1.45806 1.67222 1.14038 1.09247 1.16397 0.77743 0.85901 0.81041 1.90881 1.49324 1.14449 1.84075 1.28046 1.14467 1.00136 1.00484 1.24515 0.95657 1.02056 0.86747 1.70728 1.14807 0.94914 1.31087 1.78919 1.20087 1.15537 1.08854 1.82706 1.43077 1.06624 1.11348 0.91025 0.92086 0.92207 0.76577 0.89120 0.89120 0.92105 0.91870 0.90611 0.91740 0.76332 0.76666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.33 37.16 0.35 -1.12 16 2 C 0.14 1.25 2.21 -67.93 -0.15 1.10 16 3 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 4 N -0.73 -8.09 4.38 -53.80 -0.24 -8.32 16 5 C 0.54 8.88 7.81 -10.98 -0.09 8.79 16 6 O -0.51 -10.49 15.52 5.56 0.09 -10.41 16 7 C -0.15 -2.88 6.16 36.00 0.22 -2.66 16 8 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 9 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 10 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 11 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 13 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 C 0.14 1.01 2.21 -67.93 -0.15 0.86 16 18 H 0.10 0.79 7.58 -51.93 -0.39 0.39 16 19 C -0.17 -1.27 9.33 37.16 0.35 -0.92 16 20 N -0.71 -4.44 4.38 -54.96 -0.24 -4.68 16 21 C 0.61 4.70 7.77 -12.64 -0.10 4.60 16 22 O -0.51 -5.56 16.64 5.25 0.09 -5.47 16 23 C -0.29 -1.88 6.81 -35.95 -0.25 -2.13 16 24 C 0.08 0.53 11.55 -17.80 -0.21 0.32 16 25 N -0.25 -2.17 11.54 30.36 0.35 -1.82 16 26 N -0.25 -2.11 12.51 60.35 0.75 -1.35 16 27 S 0.43 2.22 23.05 -107.50 -2.48 -0.26 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.41 7.44 -51.93 -0.39 0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.40 3.41 8.39 -40.82 -0.34 3.07 16 32 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 33 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.58 7.45 -51.93 -0.39 0.20 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.40 1.72 7.82 -40.82 -0.32 1.40 16 39 H 0.22 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -35.64 370.13 -7.15 -42.79 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.73 Total: 0.38 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 0.18 Total: -3.75 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.36 Total: -41.06 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.17 Total: -15.88 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -4.69 Total: -4.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.64 -7.15 -42.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734697279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.894 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds