Wall clock time and date at job start Wed Apr 1 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46828 * 2 1 4 4 C 1.52995 * 109.47259 * 239.99693 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00068 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00022 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47340 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00001 * 179.97438 * 10 9 7 12 12 H 1.07993 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99799 * 180.02562 * 11 10 9 14 14 N 1.31638 * 120.00296 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00047 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47061 * 59.99734 * 15 13 11 17 17 H 1.48497 * 109.47107 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46955 * 299.99788 * 15 13 11 19 19 N 1.46505 * 109.46989 * 119.99811 * 2 1 3 20 20 C 1.34777 * 119.99724 * 275.00379 * 19 2 1 21 21 O 1.21623 * 120.00245 * 359.97438 * 20 19 2 22 22 C 1.47171 * 119.99849 * 179.72618 * 20 19 2 23 23 C 1.38244 * 128.47985 * 179.97438 * 22 20 19 24 24 N 1.31234 * 111.89093 * 179.81184 * 23 22 20 25 25 N 1.27342 * 120.03767 * 0.52994 * 24 23 22 26 26 S 1.56637 * 109.73976 * 359.69112 * 25 24 23 27 27 H 1.09008 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47658 * 300.00354 * 1 2 3 29 29 H 1.09003 * 109.47063 * 60.00162 * 1 2 3 30 30 H 1.09003 * 109.47445 * 295.00204 * 4 2 1 31 31 H 1.09002 * 109.47282 * 55.00246 * 4 2 1 32 32 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 33 33 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 34 34 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 35 35 H 1.09002 * 109.46729 * 299.99757 * 9 7 6 36 36 H 1.09003 * 109.47171 * 59.99555 * 9 7 6 37 37 H 0.96996 * 119.99713 * 180.02562 * 14 13 11 38 38 H 0.97000 * 119.99792 * 94.99947 * 19 2 1 39 39 H 1.08000 * 124.05040 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3740 -1.3387 -2.7757 8 8 6.1583 -0.7987 -2.0246 9 6 5.8763 -2.0481 -4.0068 10 16 7.6801 -1.9193 -4.0837 11 6 7.9871 -2.8082 -5.5737 12 1 7.1635 -3.2318 -6.1292 13 6 9.2875 -2.9649 -6.0328 14 7 10.2914 -2.4490 -5.3555 15 14 9.6131 -3.9080 -7.6121 16 1 8.9123 -3.2425 -8.7395 17 1 11.0732 -3.9329 -7.8817 18 1 9.1127 -5.2990 -7.4701 19 7 2.0183 -0.6906 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8580 1.1620 2.4117 22 6 2.6317 -0.7133 3.5604 23 6 2.8290 -0.2010 4.8291 24 7 3.2693 -1.1141 5.6625 25 7 3.4720 -2.3037 5.2559 26 16 3.1128 -2.4113 3.7350 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -1.7716 -1.2055 31 1 1.6054 -0.2618 -2.1369 32 1 3.8532 0.4369 -1.3573 33 1 3.9994 -1.0728 -0.4258 34 1 3.4258 -1.7351 -3.1110 35 1 5.5883 -3.0985 -3.9637 36 1 5.4413 -1.5882 -4.8941 37 1 11.2001 -2.5583 -5.6767 38 1 2.2490 -1.6318 1.1527 39 1 2.6406 0.8268 5.1023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744889158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:54 Heat of formation + Delta-G solvation = -7.771470 kcal Electronic energy + Delta-G solvation = -23767.310202 eV Core-core repulsion = 19963.854105 eV Total energy + Delta-G solvation = -3803.456097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31631 -40.27696 -39.21934 -37.03564 -34.60029 -32.95353 -32.45802 -31.82573 -30.19892 -28.23651 -27.96520 -25.52726 -24.30322 -23.22215 -21.50762 -21.18375 -20.38508 -19.78695 -18.05031 -17.77323 -17.00973 -16.39554 -16.30210 -16.07339 -15.64988 -15.36128 -15.11944 -14.83190 -14.73924 -14.23084 -14.02221 -13.88959 -13.32229 -13.18877 -13.05770 -12.67127 -12.55260 -12.40538 -12.24683 -11.79882 -11.65340 -11.41628 -11.07880 -11.06381 -10.84889 -10.79694 -10.60654 -10.58053 -10.34410 -9.86265 -9.75395 -9.46849 -9.09722 -8.98461 -8.27955 -6.53896 -6.24471 -3.95681 -0.76624 0.30549 0.98785 1.49280 2.38118 2.46330 2.95608 3.02691 3.21054 3.24887 3.27714 3.53172 3.61653 4.09869 4.17485 4.20511 4.33177 4.40461 4.58669 4.91877 4.94575 5.09204 5.10583 5.13500 5.17649 5.21195 5.44383 5.55568 5.58616 5.71538 5.81305 5.83287 5.89068 6.08382 6.50363 6.75244 7.15313 7.47921 7.56024 7.61193 8.31870 8.53659 9.20628 10.82867 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.001972 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.922586 B =14193.977754 C =15384.875914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.099 0.901 4 C -0.141 4.141 5 C 0.119 3.881 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.717 5.717 20 C 0.606 3.394 21 O -0.513 6.513 22 C -0.292 4.292 23 C 0.078 3.922 24 N -0.251 5.251 25 N -0.252 5.252 26 S 0.428 5.572 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.401 0.599 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.952 0.991 13.885 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.117 0.883 4 C -0.179 4.179 5 C -0.005 4.005 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.369 5.369 20 C 0.389 3.611 21 O -0.388 6.388 22 C -0.433 4.433 23 C -0.090 4.090 24 N -0.115 5.115 25 N -0.233 5.233 26 S 0.563 5.437 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.236 0.764 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -22.021 1.044 15.858 27.157 hybrid contribution -1.239 -0.500 -2.383 2.732 sum -23.261 0.544 13.475 26.887 Atomic orbital electron populations 1.22183 0.94270 1.02562 1.03189 1.21020 0.94479 0.97912 0.82360 0.88257 1.22156 0.95577 1.02094 0.98114 1.21269 0.92491 0.98205 0.88554 1.45988 1.07875 1.58677 1.27006 1.20340 0.81445 0.79698 0.86839 1.90715 1.54943 1.44245 1.49095 1.23532 1.06940 1.02534 0.97409 1.85423 0.92102 1.72726 1.33136 1.22816 0.95461 1.40265 1.09942 0.90961 1.24999 0.95047 0.95637 0.97908 1.70008 0.99438 1.42492 1.38321 0.86219 0.77398 0.79922 0.81934 1.19925 1.20800 1.19936 1.46005 1.67351 1.14040 1.09519 1.16432 0.77578 0.85890 0.81158 1.90872 1.49341 1.14408 1.84208 1.28053 1.14554 1.00196 1.00528 1.24503 0.95697 1.01983 0.86774 1.70719 1.14819 0.94866 1.31139 1.78921 1.19911 1.15698 1.08783 1.82676 1.42877 1.06708 1.11428 0.92130 0.91724 0.90943 0.90289 0.88939 0.91368 0.91767 0.76773 0.89214 0.89198 0.92091 0.76447 0.76691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.48 37.16 0.35 -0.43 16 2 C 0.15 0.85 2.57 -67.93 -0.17 0.67 16 3 H 0.10 0.74 7.58 -51.93 -0.39 0.35 16 4 C -0.14 -0.71 4.87 -26.73 -0.13 -0.84 16 5 C 0.12 1.12 5.56 -4.04 -0.02 1.10 16 6 N -0.74 -8.43 5.56 -60.29 -0.33 -8.76 16 7 C 0.53 9.27 7.85 -10.98 -0.09 9.19 16 8 O -0.52 -11.31 15.86 5.56 0.09 -11.22 16 9 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 10 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 11 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 12 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 15 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 N -0.72 -4.34 4.53 -54.96 -0.25 -4.59 16 20 C 0.61 5.09 7.77 -12.63 -0.10 4.99 16 21 O -0.51 -5.87 16.64 5.26 0.09 -5.78 16 22 C -0.29 -2.22 6.81 -35.95 -0.25 -2.47 16 23 C 0.08 0.62 11.55 -17.80 -0.21 0.42 16 24 N -0.25 -2.49 11.54 30.36 0.35 -2.14 16 25 N -0.25 -2.44 12.51 60.35 0.75 -1.69 16 26 S 0.43 2.78 23.05 -107.50 -2.48 0.30 16 27 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.66 7.75 -51.93 -0.40 0.25 16 34 H 0.40 3.23 8.47 -40.82 -0.35 2.89 16 35 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 36 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.40 1.65 8.03 -40.82 -0.33 1.32 16 39 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -37.40 373.11 -7.67 -45.06 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.82 Total: -1.03 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.19 Total: -2.83 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 1.26 Total: -42.36 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.18 Total: -17.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -4.69 Total: -3.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.40 -7.67 -45.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744889158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.292 kcal (2) G-P(sol) polarization free energy of solvation -37.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds