Wall clock time and date at job start Wed Apr 1 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46828 * 2 1 4 4 C 1.52995 * 109.47259 * 239.99693 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00068 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00022 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47340 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00001 * 179.97438 * 10 9 7 12 12 H 1.07993 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99799 * 180.02562 * 11 10 9 14 14 N 1.31638 * 120.00296 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00047 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47061 * 59.99734 * 15 13 11 17 17 H 1.48497 * 109.47107 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46955 * 299.99788 * 15 13 11 19 19 N 1.46505 * 109.46989 * 119.99811 * 2 1 3 20 20 C 1.34777 * 119.99724 * 275.00379 * 19 2 1 21 21 O 1.21623 * 120.00245 * 359.97438 * 20 19 2 22 22 C 1.47171 * 119.99849 * 179.72618 * 20 19 2 23 23 C 1.38244 * 128.47985 * 179.97438 * 22 20 19 24 24 N 1.31234 * 111.89093 * 179.81184 * 23 22 20 25 25 N 1.27342 * 120.03767 * 0.52994 * 24 23 22 26 26 S 1.56637 * 109.73976 * 359.69112 * 25 24 23 27 27 H 1.09008 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47658 * 300.00354 * 1 2 3 29 29 H 1.09003 * 109.47063 * 60.00162 * 1 2 3 30 30 H 1.09003 * 109.47445 * 295.00204 * 4 2 1 31 31 H 1.09002 * 109.47282 * 55.00246 * 4 2 1 32 32 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 33 33 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 34 34 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 35 35 H 1.09002 * 109.46729 * 299.99757 * 9 7 6 36 36 H 1.09003 * 109.47171 * 59.99555 * 9 7 6 37 37 H 0.96996 * 119.99713 * 180.02562 * 14 13 11 38 38 H 0.97000 * 119.99792 * 94.99947 * 19 2 1 39 39 H 1.08000 * 124.05040 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3740 -1.3387 -2.7757 8 8 6.1583 -0.7987 -2.0246 9 6 5.8763 -2.0481 -4.0068 10 16 7.6801 -1.9193 -4.0837 11 6 7.9871 -2.8082 -5.5737 12 1 7.1635 -3.2318 -6.1292 13 6 9.2875 -2.9649 -6.0328 14 7 10.2914 -2.4490 -5.3555 15 14 9.6131 -3.9080 -7.6121 16 1 8.9123 -3.2425 -8.7395 17 1 11.0732 -3.9329 -7.8817 18 1 9.1127 -5.2990 -7.4701 19 7 2.0183 -0.6906 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8580 1.1620 2.4117 22 6 2.6317 -0.7133 3.5604 23 6 2.8290 -0.2010 4.8291 24 7 3.2693 -1.1141 5.6625 25 7 3.4720 -2.3037 5.2559 26 16 3.1128 -2.4113 3.7350 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -1.7716 -1.2055 31 1 1.6054 -0.2618 -2.1369 32 1 3.8532 0.4369 -1.3573 33 1 3.9994 -1.0728 -0.4258 34 1 3.4258 -1.7351 -3.1110 35 1 5.5883 -3.0985 -3.9637 36 1 5.4413 -1.5882 -4.8941 37 1 11.2001 -2.5583 -5.6767 38 1 2.2490 -1.6318 1.1527 39 1 2.6406 0.8268 5.1023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744889158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:53 Heat of formation + Delta-G solvation = -37.389442 kcal Electronic energy + Delta-G solvation = -23768.594533 eV Core-core repulsion = 19963.854105 eV Total energy + Delta-G solvation = -3804.740429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96118 -40.96432 -40.48126 -37.75161 -35.62787 -34.57055 -33.63026 -32.54699 -31.29838 -29.20535 -28.59488 -27.63748 -24.95856 -23.94356 -22.16734 -21.81186 -21.55739 -20.37910 -19.82570 -18.57664 -17.74690 -17.56077 -17.23493 -17.00127 -16.86466 -16.65255 -16.14973 -15.87438 -15.70579 -15.41027 -15.06762 -14.78077 -14.45731 -14.41535 -13.85456 -13.63895 -13.53432 -13.15670 -13.13070 -12.90633 -12.85549 -12.65273 -12.41653 -12.38669 -11.92873 -11.72732 -11.52092 -11.24889 -11.21880 -11.11643 -10.96758 -10.93661 -10.31220 -10.25437 -10.07615 -8.65503 -8.33396 -6.11485 -1.39594 -0.27839 0.37797 0.84420 1.28720 1.44931 1.48740 1.58038 1.64128 1.80182 1.84194 2.27120 2.31808 2.92789 3.00790 3.33561 3.53820 3.61831 3.77261 3.83658 4.06497 4.10583 4.33864 4.45289 4.47605 4.54092 4.54665 4.64813 4.79691 4.91829 5.02130 5.14449 5.34902 5.39511 5.42897 5.46418 6.20811 6.21257 6.52916 6.55484 6.89614 7.07960 7.29159 8.75450 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.001972 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.922586 B =14193.977754 C =15384.875914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.129 4.129 10 S -0.158 6.158 11 C -0.545 4.545 12 H 0.085 0.915 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.998 3.002 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.261 1.261 19 N -0.706 5.706 20 C 0.607 3.393 21 O -0.549 6.549 22 C -0.303 4.303 23 C 0.074 3.926 24 N -0.278 5.278 25 N -0.291 5.291 26 S 0.501 5.499 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.420 0.580 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.270 0.730 38 H 0.412 0.588 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.551 -0.785 11.951 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.097 0.903 4 C -0.162 4.162 5 C -0.008 4.008 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.069 5.931 11 C -0.692 4.692 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.185 1.185 19 N -0.359 5.359 20 C 0.390 3.610 21 O -0.427 6.427 22 C -0.444 4.444 23 C -0.094 4.094 24 N -0.141 5.141 25 N -0.272 5.272 26 S 0.636 5.364 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.258 0.742 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.249 0.751 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -24.693 -0.777 13.911 28.353 hybrid contribution -0.558 0.050 -1.783 1.869 sum -25.251 -0.727 12.128 28.022 Atomic orbital electron populations 1.22125 0.92900 1.03570 1.02950 1.21060 0.95415 0.97034 0.82354 0.90302 1.22090 0.91763 1.04027 0.98371 1.21434 0.95577 0.96669 0.87162 1.45676 1.05918 1.57232 1.27559 1.20095 0.83080 0.79271 0.85870 1.90707 1.56799 1.46683 1.50581 1.23376 1.00713 1.04558 0.99362 1.85633 1.00096 1.73382 1.33943 1.23172 0.96171 1.39994 1.09905 0.89719 1.26143 0.94752 0.96576 1.01824 1.70185 0.99929 1.44261 1.40523 0.85007 0.77282 0.78702 0.77039 1.18611 1.20647 1.18530 1.45994 1.66360 1.14529 1.08994 1.16524 0.77200 0.85503 0.81759 1.90854 1.51123 1.15942 1.84806 1.28084 1.14793 1.01283 1.00259 1.24769 0.95294 1.02447 0.86870 1.70758 1.15925 0.95174 1.32195 1.78682 1.21406 1.16059 1.11085 1.82294 1.40393 1.04809 1.08939 0.90435 0.93579 0.89639 0.87419 0.86916 0.93327 0.92434 0.74240 0.86885 0.87143 0.92063 0.75114 0.75394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.48 71.98 0.68 -0.39 16 2 C 0.15 1.36 2.57 44.99 0.12 1.48 16 3 H 0.08 1.12 7.58 -2.39 -0.02 1.10 16 4 C -0.12 -0.78 4.87 30.59 0.15 -0.63 16 5 C 0.12 1.92 5.56 86.38 0.48 2.40 16 6 N -0.71 -14.07 5.56 -463.06 -2.57 -16.64 16 7 C 0.53 17.87 7.85 87.66 0.69 18.56 16 8 O -0.57 -25.26 15.86 -3.03 -0.05 -25.31 16 9 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 10 S -0.16 -8.54 20.57 -56.49 -1.16 -9.70 16 11 C -0.54 -30.33 9.50 67.95 0.65 -29.68 16 12 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.65 5.49 84.86 0.47 1.12 16 14 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 15 Si 1.00 42.67 29.55 68.60 2.03 44.69 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 N -0.71 -7.30 4.53 -446.05 -2.02 -9.32 16 20 C 0.61 9.83 7.77 86.59 0.67 10.50 16 21 O -0.55 -12.71 16.64 -4.10 -0.07 -12.77 16 22 C -0.30 -4.44 6.81 24.62 0.17 -4.27 16 23 C 0.07 1.20 11.55 84.78 0.98 2.18 16 24 N -0.28 -5.58 11.54 -57.87 -0.67 -6.25 16 25 N -0.29 -5.57 12.51 37.02 0.46 -5.11 16 26 S 0.50 5.88 23.05 -56.49 -1.30 4.58 16 27 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.07 7.75 -2.39 -0.02 1.06 16 34 H 0.42 4.90 8.47 -92.71 -0.79 4.12 16 35 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.41 2.28 8.03 -92.71 -0.74 1.53 16 39 H 0.23 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -85.67 373.11 0.00 -85.67 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.42 Total: 8.50 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.49 Total: -3.03 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -4.51 Total: -92.62 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.12 Total: -38.09 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.46 Total: -5.12 kcal Total: -85.67 0.00 -85.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744889158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.277 kcal (2) G-P(sol) polarization free energy of solvation -85.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds