Wall clock time and date at job start Wed Apr 1 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21279 * 119.99824 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.47455 * 179.97438 * 7 5 4 9 9 C 1.76195 * 100.00355 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99640 * 359.97438 * 9 8 7 11 11 C 1.38799 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31626 * 119.99935 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99758 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47230 * 89.99981 * 13 11 9 15 15 H 1.48496 * 109.46913 * 209.99735 * 13 11 9 16 16 H 1.48493 * 109.47065 * 329.99579 * 13 11 9 17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 18 18 H 1.09002 * 109.47103 * 300.00247 * 17 2 1 19 19 C 1.52997 * 109.47482 * 179.97438 * 17 2 1 20 20 N 1.46510 * 109.46966 * 59.99937 * 17 2 1 21 21 C 1.34774 * 119.99612 * 205.00152 * 20 17 2 22 22 O 1.21568 * 120.00626 * 359.97438 * 21 20 17 23 23 C 1.47760 * 119.99337 * 180.02562 * 21 20 17 24 24 C 1.39354 * 124.11109 * 179.97438 * 23 21 20 25 25 N 1.30093 * 112.14135 * 179.97438 * 24 23 21 26 26 S 1.55919 * 108.75476 * 359.97438 * 25 24 23 27 27 N 1.31482 * 124.11906 * 359.69904 * 23 21 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 32 32 H 1.08995 * 109.47183 * 300.00111 * 7 5 4 33 33 H 1.09009 * 109.47183 * 59.99391 * 7 5 4 34 34 H 0.97004 * 119.99708 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.47261 * 180.02562 * 19 17 2 36 36 H 1.09002 * 109.47153 * 300.00216 * 19 17 2 37 37 H 1.09001 * 109.47289 * 60.00300 * 19 17 2 38 38 H 0.96995 * 119.99596 * 25.00171 * 20 17 2 39 39 H 1.07998 * 123.93239 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7286 3.5878 8 16 2.7105 0.4346 4.9732 9 6 3.3135 -0.6306 6.2405 10 1 3.5221 -1.6673 6.0207 11 6 3.5206 -0.1375 7.5213 12 7 3.9707 -0.9334 8.4682 13 14 3.1592 1.6554 7.9016 14 1 1.7487 1.7928 8.3449 15 1 4.0651 2.1248 8.9805 16 1 3.3767 2.4737 6.6817 17 6 2.0400 -0.7212 -1.2491 18 1 1.6767 -1.7489 -1.2491 19 6 3.5700 -0.7207 -1.2494 20 7 1.5517 -0.0306 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7126 -1.8825 -3.6610 23 6 0.9310 -0.0064 -4.8129 24 6 0.7659 -0.6165 -6.0548 25 7 0.3194 0.2123 -6.9527 26 16 0.1295 1.6120 -6.2926 27 7 0.5909 1.2633 -4.8442 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 1.1527 32 1 1.9759 -1.5505 3.8326 33 1 3.6480 -1.1213 3.3986 34 1 4.1158 -0.5886 9.3632 35 1 3.9334 -1.2342 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 3.9338 -1.2343 -0.3595 38 1 1.3210 0.9105 -2.4018 39 1 0.9833 -1.6563 -6.2494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755969787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:04 Heat of formation + Delta-G solvation = -16.618210 kcal Electronic energy + Delta-G solvation = -24276.048598 eV Core-core repulsion = 20472.208877 eV Total energy + Delta-G solvation = -3803.839720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67231 -40.12537 -39.24451 -36.94967 -34.57393 -33.87860 -32.45569 -31.39331 -30.29576 -28.69278 -27.88940 -25.63210 -24.60646 -23.45325 -21.36756 -21.04877 -20.37095 -19.90019 -18.50555 -17.82672 -16.90807 -16.60784 -16.28048 -15.86951 -15.71130 -15.23017 -15.07712 -14.94369 -14.49988 -14.14704 -13.86123 -13.67695 -13.40104 -12.84939 -12.81187 -12.70120 -12.60314 -12.15084 -12.02436 -11.93356 -11.75760 -11.65007 -11.59294 -11.28629 -11.02722 -11.01813 -10.66728 -10.59505 -9.88253 -9.83396 -9.64052 -9.56323 -9.09029 -9.01080 -8.52707 -6.94050 -6.30446 -4.02472 -0.14218 0.81884 0.99567 1.05864 2.36834 2.60234 2.80298 2.90851 3.30160 3.33689 3.48617 3.63316 3.91423 4.13451 4.30482 4.31368 4.54094 4.62198 4.70753 4.83682 4.93246 5.08605 5.11747 5.20720 5.28015 5.38851 5.48901 5.57041 5.73010 5.75413 5.80982 5.92429 5.97748 5.98981 6.05557 6.45495 6.93016 7.51484 7.57662 7.92541 8.40190 8.41662 9.15624 10.78740 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.001815 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.860157 B =15424.638150 C =15917.450355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.094 0.906 4 N -0.728 5.728 5 C 0.535 3.465 6 O -0.517 6.517 7 C -0.124 4.124 8 S -0.141 6.141 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C 0.136 3.864 18 H 0.099 0.901 19 C -0.165 4.165 20 N -0.699 5.699 21 C 0.609 3.391 22 O -0.520 6.520 23 C 0.010 3.990 24 C 0.091 3.909 25 N -0.578 5.578 26 S 0.727 5.273 27 N -0.547 5.547 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.401 0.599 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.271 0.729 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.138 2.053 -31.334 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.383 5.383 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.275 4.275 8 S 0.085 5.915 9 C -0.670 4.670 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.516 5.516 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C 0.031 3.969 18 H 0.117 0.883 19 C -0.223 4.223 20 N -0.351 5.351 21 C 0.389 3.611 22 O -0.394 6.394 23 C -0.165 4.165 24 C -0.102 4.102 25 N -0.419 5.419 26 S 0.769 5.231 27 N -0.397 5.397 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.236 0.764 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.248 0.752 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.033 4.947 -31.913 33.278 hybrid contribution 0.822 -2.324 1.048 2.678 sum -7.211 2.623 -30.865 31.805 Atomic orbital electron populations 1.22204 0.94776 1.02526 1.02795 1.20998 0.94510 0.97815 0.83466 0.88764 1.45889 1.69396 1.14055 1.09005 1.20277 0.76761 0.87192 0.83679 1.90701 1.48325 1.15715 1.84352 1.23282 1.04574 1.03506 0.96144 1.84784 1.87183 1.16436 1.03091 1.22314 1.50637 0.98697 0.95303 0.89356 1.24716 0.93368 0.98281 0.94961 1.69938 1.43379 1.35764 1.02529 0.86732 0.79309 0.85234 0.80553 1.19222 1.19949 1.15943 1.21263 0.94999 0.97692 0.82953 0.88318 1.22195 0.94001 1.02991 1.03112 1.45725 1.65962 1.14731 1.08674 1.16677 0.77712 0.85517 0.81224 1.90858 1.49991 1.14477 1.84099 1.22490 1.07053 0.88824 0.98145 1.23802 0.97258 1.02757 0.86418 1.72279 1.22686 1.09318 1.37622 1.79178 1.42889 1.12654 0.88381 1.72431 1.19066 1.18939 1.29311 0.92228 0.91883 0.91235 0.76441 0.88404 0.88356 0.91933 0.91710 0.91979 0.90702 0.75247 0.76827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.33 37.16 0.35 -1.25 16 2 C 0.14 1.36 2.21 -67.94 -0.15 1.21 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 N -0.73 -8.23 4.38 -53.81 -0.24 -8.46 16 5 C 0.53 8.76 7.81 -10.99 -0.09 8.68 16 6 O -0.52 -10.39 15.52 5.56 0.09 -10.30 16 7 C -0.12 -2.29 6.16 36.01 0.22 -2.07 16 8 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 9 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 10 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 11 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 12 N -0.88 -26.32 13.97 55.49 0.78 -25.55 16 13 Si 0.86 21.55 27.74 -169.99 -4.72 16.84 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 17 C 0.14 1.12 2.21 -67.93 -0.15 0.97 16 18 H 0.10 0.85 7.58 -51.93 -0.39 0.45 16 19 C -0.16 -1.38 9.33 37.16 0.35 -1.04 16 20 N -0.70 -5.47 4.38 -54.77 -0.24 -5.71 16 21 C 0.61 5.44 7.79 -12.37 -0.10 5.35 16 22 O -0.52 -5.84 16.47 5.31 0.09 -5.76 16 23 C 0.01 0.08 6.81 -83.71 -0.57 -0.49 16 24 C 0.09 0.63 11.22 -17.87 -0.20 0.43 16 25 N -0.58 -4.07 11.41 19.42 0.22 -3.85 16 26 S 0.73 3.67 23.69 -107.50 -2.55 1.12 16 27 N -0.55 -3.86 11.00 23.17 0.25 -3.61 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.40 3.50 8.39 -40.82 -0.34 3.16 16 32 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 33 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.61 7.45 -51.93 -0.39 0.22 16 38 H 0.41 2.87 7.97 -40.82 -0.33 2.54 16 39 H 0.22 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -35.07 366.11 -7.68 -42.75 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.76 Total: 2.54 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -0.12 Total: -0.05 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.78 Total: -47.17 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.17 Total: -16.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -4.54 Total: -4.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.07 -7.68 -42.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755969787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.132 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds