Wall clock time and date at job start Wed Apr 1 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21279 * 119.99824 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.47455 * 179.97438 * 7 5 4 9 9 C 1.76195 * 100.00355 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99640 * 359.97438 * 9 8 7 11 11 C 1.38799 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31626 * 119.99935 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99758 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47230 * 89.99981 * 13 11 9 15 15 H 1.48496 * 109.46913 * 209.99735 * 13 11 9 16 16 H 1.48493 * 109.47065 * 329.99579 * 13 11 9 17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 18 18 H 1.09002 * 109.47103 * 300.00247 * 17 2 1 19 19 C 1.52997 * 109.47482 * 179.97438 * 17 2 1 20 20 N 1.46510 * 109.46966 * 59.99937 * 17 2 1 21 21 C 1.34774 * 119.99612 * 205.00152 * 20 17 2 22 22 O 1.21568 * 120.00626 * 359.97438 * 21 20 17 23 23 C 1.47760 * 119.99337 * 180.02562 * 21 20 17 24 24 C 1.39354 * 124.11109 * 179.97438 * 23 21 20 25 25 N 1.30093 * 112.14135 * 179.97438 * 24 23 21 26 26 S 1.55919 * 108.75476 * 359.97438 * 25 24 23 27 27 N 1.31482 * 124.11906 * 359.69904 * 23 21 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 32 32 H 1.08995 * 109.47183 * 300.00111 * 7 5 4 33 33 H 1.09009 * 109.47183 * 59.99391 * 7 5 4 34 34 H 0.97004 * 119.99708 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.47261 * 180.02562 * 19 17 2 36 36 H 1.09002 * 109.47153 * 300.00216 * 19 17 2 37 37 H 1.09001 * 109.47289 * 60.00300 * 19 17 2 38 38 H 0.96995 * 119.99596 * 25.00171 * 20 17 2 39 39 H 1.07998 * 123.93239 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7286 3.5878 8 16 2.7105 0.4346 4.9732 9 6 3.3135 -0.6306 6.2405 10 1 3.5221 -1.6673 6.0207 11 6 3.5206 -0.1375 7.5213 12 7 3.9707 -0.9334 8.4682 13 14 3.1592 1.6554 7.9016 14 1 1.7487 1.7928 8.3449 15 1 4.0651 2.1248 8.9805 16 1 3.3767 2.4737 6.6817 17 6 2.0400 -0.7212 -1.2491 18 1 1.6767 -1.7489 -1.2491 19 6 3.5700 -0.7207 -1.2494 20 7 1.5517 -0.0306 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7126 -1.8825 -3.6610 23 6 0.9310 -0.0064 -4.8129 24 6 0.7659 -0.6165 -6.0548 25 7 0.3194 0.2123 -6.9527 26 16 0.1295 1.6120 -6.2926 27 7 0.5909 1.2633 -4.8442 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 1.1527 32 1 1.9759 -1.5505 3.8326 33 1 3.6480 -1.1213 3.3986 34 1 4.1158 -0.5886 9.3632 35 1 3.9334 -1.2342 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 3.9338 -1.2343 -0.3595 38 1 1.3210 0.9105 -2.4018 39 1 0.9833 -1.6563 -6.2494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755969787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:03 Heat of formation + Delta-G solvation = -43.865067 kcal Electronic energy + Delta-G solvation = -24277.230110 eV Core-core repulsion = 20472.208877 eV Total energy + Delta-G solvation = -3805.021233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22783 -41.07157 -40.18546 -37.88257 -35.37167 -34.66255 -34.56814 -32.44486 -31.08529 -29.93826 -28.46356 -27.83338 -25.28996 -24.19581 -22.21783 -21.85425 -21.32376 -20.39905 -19.93411 -19.02889 -18.08361 -17.27389 -17.19511 -17.05102 -16.83930 -16.46165 -16.31619 -15.80538 -15.67197 -15.21210 -14.99585 -14.89672 -14.72044 -14.38977 -13.85143 -13.39221 -13.32753 -13.28748 -13.24257 -13.00754 -12.74153 -12.62489 -12.56612 -12.45690 -12.27950 -12.10247 -11.86989 -11.78281 -11.32202 -11.15969 -10.99159 -10.51727 -10.47828 -10.23111 -10.05928 -8.97360 -8.50255 -6.20571 -0.66063 0.34340 0.44417 0.61552 0.99432 1.32399 1.45829 1.53113 1.57803 1.80286 1.96548 2.25544 2.38982 2.73997 2.88100 3.33823 3.42568 3.68406 3.85296 3.88171 4.02461 4.08700 4.26337 4.39331 4.45227 4.48809 4.50833 4.68590 4.70716 4.84707 4.94074 5.20744 5.22367 5.25251 5.32957 5.46304 5.71975 6.13131 6.28820 6.45024 6.92282 6.95039 7.19197 8.62043 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.001815 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.860157 B =15424.638150 C =15917.450355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.084 0.916 4 N -0.704 5.704 5 C 0.542 3.458 6 O -0.557 6.557 7 C -0.113 4.113 8 S -0.174 6.174 9 C -0.529 4.529 10 H 0.062 0.938 11 C 0.044 3.956 12 N -0.917 5.917 13 Si 0.915 3.085 14 H -0.263 1.263 15 H -0.261 1.261 16 H -0.235 1.235 17 C 0.147 3.853 18 H 0.102 0.898 19 C -0.162 4.162 20 N -0.693 5.693 21 C 0.611 3.389 22 O -0.546 6.546 23 C -0.006 4.006 24 C 0.089 3.911 25 N -0.602 5.602 26 S 0.793 5.207 27 N -0.562 5.562 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.417 0.583 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.276 0.724 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.416 0.584 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 2.734 -33.299 34.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.102 0.898 4 N -0.359 5.359 5 C 0.328 3.672 6 O -0.434 6.434 7 C -0.264 4.264 8 S 0.053 5.947 9 C -0.676 4.676 10 H 0.081 0.919 11 C -0.161 4.161 12 N -0.555 5.555 13 Si 0.737 3.263 14 H -0.188 1.188 15 H -0.185 1.185 16 H -0.159 1.159 17 C 0.042 3.958 18 H 0.120 0.880 19 C -0.221 4.221 20 N -0.345 5.345 21 C 0.392 3.608 22 O -0.423 6.423 23 C -0.179 4.179 24 C -0.103 4.103 25 N -0.443 5.443 26 S 0.834 5.166 27 N -0.415 5.415 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.255 0.745 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.254 0.746 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.699 5.585 -33.907 35.448 hybrid contribution 0.984 -2.564 1.457 3.108 sum -7.716 3.021 -32.450 33.491 Atomic orbital electron populations 1.22148 0.94220 1.02986 1.02424 1.21046 0.94799 0.97308 0.83174 0.89805 1.45619 1.67624 1.14673 1.07971 1.19853 0.76624 0.86522 0.84242 1.90696 1.50454 1.17295 1.84987 1.23280 1.06314 1.02283 0.94487 1.84686 1.86949 1.18313 1.04791 1.22477 1.50227 0.98213 0.96727 0.91947 1.25575 0.93302 1.02256 0.94966 1.70020 1.44623 1.37697 1.03180 0.85860 0.79476 0.80437 0.80557 1.18765 1.18507 1.15932 1.21098 0.94906 0.97533 0.82302 0.87969 1.22173 0.93896 1.02824 1.03161 1.45652 1.65613 1.14910 1.08305 1.16794 0.77167 0.85201 0.81609 1.90841 1.51278 1.15588 1.84589 1.22269 1.08509 0.89129 0.97971 1.23913 0.96976 1.03288 0.86097 1.72203 1.23398 1.10420 1.38322 1.78933 1.40240 1.10898 0.86499 1.72289 1.19390 1.18827 1.30950 0.91332 0.90243 0.93618 0.74529 0.86852 0.86660 0.91429 0.92013 0.92249 0.90315 0.74628 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.33 71.98 0.67 -2.14 16 2 C 0.14 2.55 2.21 44.99 0.10 2.65 16 3 H 0.08 1.78 7.58 -2.39 -0.02 1.76 16 4 N -0.70 -14.49 4.38 -442.56 -1.94 -16.43 16 5 C 0.54 16.99 7.81 87.66 0.68 17.67 16 6 O -0.56 -21.96 15.52 -3.03 -0.05 -22.00 16 7 C -0.11 -4.00 6.16 71.24 0.44 -3.56 16 8 S -0.17 -8.53 18.55 -56.49 -1.05 -9.58 16 9 C -0.53 -30.33 10.04 67.95 0.68 -29.64 16 10 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 11 C 0.04 2.58 5.50 84.86 0.47 3.05 16 12 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 13 Si 0.91 44.53 27.74 68.60 1.90 46.43 16 14 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 15 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.24 -11.38 6.74 99.48 0.67 -10.71 16 17 C 0.15 2.15 2.21 44.99 0.10 2.25 16 18 H 0.10 1.52 7.58 -2.39 -0.02 1.50 16 19 C -0.16 -2.45 9.33 71.98 0.67 -1.78 16 20 N -0.69 -9.73 4.38 -445.48 -1.95 -11.69 16 21 C 0.61 10.14 7.79 86.76 0.68 10.82 16 22 O -0.55 -11.70 16.47 -3.93 -0.06 -11.77 16 23 C -0.01 -0.08 6.81 41.98 0.29 0.21 16 24 C 0.09 1.12 11.22 85.22 0.96 2.08 16 25 N -0.60 -7.48 11.41 -92.46 -1.05 -8.53 16 26 S 0.79 6.37 23.69 -56.49 -1.34 5.04 16 27 N -0.56 -6.95 11.00 -80.61 -0.89 -7.83 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.14 7.45 -2.39 -0.02 1.12 16 30 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.42 6.14 8.39 -92.70 -0.78 5.37 16 32 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 33 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.12 7.45 -2.39 -0.02 1.10 16 38 H 0.42 5.11 7.97 -92.71 -0.74 4.37 16 39 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -75.73 366.11 -0.83 -76.57 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -0.44 Total: 13.39 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 5.73 Total: 1.60 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -5.53 Total: -99.67 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.11 Total: -33.77 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.39 Total: -4.55 kcal Total: -75.73 -0.83 -76.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755969787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.701 kcal (2) G-P(sol) polarization free energy of solvation -75.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds