Wall clock time and date at job start Wed Apr 1 2020 03:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76197 * 100.00069 * 2 1 4 4 N 1.30315 * 126.16699 * 359.68499 * 3 2 1 5 5 N 1.26105 * 117.60308 * 180.26224 * 4 3 2 6 6 C 1.29323 * 117.97092 * 0.02562 * 5 4 3 7 7 C 1.50704 * 126.05428 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47002 * 89.97420 * 7 6 5 9 9 C 1.34779 * 120.00084 * 179.97438 * 8 7 6 10 10 O 1.21580 * 119.99871 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00193 * 180.02562 * 9 8 7 12 12 C 1.47428 * 125.64888 * 359.69158 * 11 9 8 13 13 C 1.55126 * 104.72331 * 155.81773 * 12 11 9 14 14 C 1.55162 * 101.48400 * 37.29737 * 13 12 11 15 15 O 1.42901 * 110.72228 * 82.69368 * 14 13 12 16 16 C 1.50704 * 110.86811 * 205.90033 * 14 13 12 17 17 H 1.08001 * 119.99719 * 355.05645 * 16 14 13 18 18 C 1.37872 * 119.99682 * 175.06527 * 16 14 13 19 19 N 1.31519 * 120.00110 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00100 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46777 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47183 * 119.99443 * 20 18 16 23 23 H 1.48503 * 109.47420 * 240.00047 * 20 18 16 24 24 C 1.47019 * 125.65162 * 180.02562 * 11 9 8 25 25 S 1.76475 * 107.88543 * 359.97438 * 6 5 4 26 26 H 1.09004 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47352 * 299.99659 * 1 2 3 28 28 H 1.08998 * 109.47420 * 60.00229 * 1 2 3 29 29 H 1.09001 * 109.46776 * 209.97229 * 7 6 5 30 30 H 1.08993 * 109.47241 * 329.97342 * 7 6 5 31 31 H 0.97009 * 120.00196 * 0.02562 * 8 7 6 32 32 H 1.08999 * 110.36500 * 274.74930 * 12 11 9 33 33 H 1.09002 * 110.36328 * 37.06705 * 12 11 9 34 34 H 1.08996 * 111.19389 * 279.19162 * 13 12 11 35 35 H 1.09001 * 110.90579 * 155.27294 * 13 12 11 36 36 H 0.96692 * 114.00017 * 185.01988 * 15 14 13 37 37 H 0.97006 * 119.99694 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.88044 * 300.44187 * 24 11 9 39 39 H 1.09001 * 109.88081 * 61.44235 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.2135 2.6752 -0.0058 5 7 1.6150 3.8707 -0.0099 6 6 2.8908 4.0820 -0.0086 7 6 3.5668 5.4290 -0.0122 8 7 3.7830 5.8705 1.3677 9 6 4.3773 7.0556 1.6108 10 8 4.7335 7.7582 0.6848 11 7 4.5767 7.4616 2.8804 12 6 4.1904 6.7155 4.0919 13 6 5.1413 7.2416 5.1989 14 6 5.2437 8.7451 4.8293 15 8 4.1283 9.4708 5.3501 16 6 6.5392 9.3331 5.3264 17 1 7.2073 8.7356 5.9288 18 6 6.8712 10.6338 5.0122 19 7 6.0576 11.3613 4.2783 20 14 8.4766 11.3630 5.6289 21 1 9.2071 10.3467 6.4281 22 1 9.3100 11.7754 4.4711 23 1 8.1888 12.5466 6.4784 24 6 5.2092 8.7251 3.2867 25 16 3.7000 2.5137 -0.0002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.5262 5.3525 -0.5238 30 1 2.9354 6.1509 -0.5300 31 1 3.4991 5.3097 2.1066 32 1 3.1520 6.9231 4.3502 33 1 4.3384 5.6460 3.9419 34 1 6.1166 6.7582 5.1430 35 1 4.6984 7.1113 6.1863 36 1 4.1040 10.3998 5.0828 37 1 6.2914 12.2763 4.0570 38 1 6.2243 8.7749 2.8926 39 1 4.6260 9.5678 2.9154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771741668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:16 Heat of formation + Delta-G solvation = -28.557761 kcal Electronic energy + Delta-G solvation = -24861.312193 eV Core-core repulsion = 21056.954735 eV Total energy + Delta-G solvation = -3804.357458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.21313 -41.29735 -39.22479 -36.35057 -36.08935 -34.21889 -33.11430 -31.70099 -30.10405 -29.62785 -29.08852 -27.08223 -25.87971 -24.18563 -22.10814 -21.47293 -21.19023 -20.42006 -19.39826 -18.97375 -18.30170 -17.60368 -17.15731 -16.83416 -16.61361 -16.36091 -16.02786 -15.51937 -15.30505 -14.81778 -14.71806 -14.68325 -14.55559 -14.42899 -14.17750 -13.77073 -13.50218 -13.43330 -13.27607 -12.86401 -12.54631 -12.34524 -12.24435 -12.17651 -12.09081 -11.91897 -11.68754 -11.40692 -11.35720 -11.16872 -10.83817 -10.65158 -10.42108 -10.28106 -9.47102 -8.91238 -8.25098 -6.40720 -1.04347 -0.61333 -0.05973 0.25446 1.02696 1.11029 1.41251 1.44709 1.55169 1.69589 2.05735 2.38893 2.77646 2.99504 3.01779 3.61990 3.78985 3.82891 4.05121 4.16964 4.24368 4.29436 4.34473 4.36285 4.43999 4.56656 4.72772 4.90276 5.05760 5.12546 5.17367 5.21061 5.36437 5.49176 5.75632 5.96078 6.10645 6.66233 6.93506 7.25913 7.28634 7.36259 7.44156 8.81169 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.002120 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.743443 B =13204.317592 C =13399.382777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S 0.053 5.947 3 C -0.018 4.018 4 N -0.292 5.292 5 N -0.254 5.254 6 C 0.002 3.998 7 C 0.227 3.773 8 N -0.729 5.729 9 C 0.719 3.281 10 O -0.633 6.633 11 N -0.633 5.633 12 C 0.106 3.894 13 C -0.109 4.109 14 C 0.232 3.768 15 O -0.588 6.588 16 C -0.554 4.554 17 H 0.068 0.932 18 C 0.025 3.975 19 N -0.915 5.915 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.279 1.279 24 C 0.142 3.858 25 S 0.180 5.820 26 H 0.142 0.858 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.407 0.593 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.375 0.625 37 H 0.269 0.731 38 H 0.034 0.966 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -25.626 -7.582 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.282 5.718 3 C -0.404 4.404 4 N -0.134 5.134 5 N -0.092 5.092 6 C -0.283 4.283 7 C 0.099 3.901 8 N -0.388 5.388 9 C 0.421 3.579 10 O -0.515 6.515 11 N -0.369 5.369 12 C -0.016 4.016 13 C -0.147 4.147 14 C 0.192 3.808 15 O -0.396 6.396 16 C -0.592 4.592 17 H 0.086 0.914 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.205 1.205 24 C 0.018 3.982 25 S 0.420 5.580 26 H 0.161 0.839 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.244 0.756 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.236 -26.447 -8.150 28.605 hybrid contribution -0.137 2.493 0.102 2.499 sum -7.372 -23.954 -8.048 26.323 Atomic orbital electron populations 1.23824 0.91706 1.08975 1.07402 1.85781 1.10087 0.87496 1.88453 1.32111 0.95664 1.07788 1.04821 1.71797 1.28983 0.93409 1.19243 1.70795 1.12849 1.12712 1.12805 1.29620 0.92049 1.00404 1.06218 1.19433 1.00376 0.86784 0.83492 1.44801 1.65493 1.19967 1.08503 1.15479 0.78897 0.81526 0.82008 1.90876 1.59692 1.57173 1.43758 1.47883 1.62344 1.22742 1.03962 1.22454 0.98945 0.96391 0.83791 1.22757 0.99687 0.93740 0.98540 1.19745 0.84907 0.89847 0.86350 1.86098 1.49369 1.27276 1.76829 1.21844 1.05130 0.98416 1.33853 0.91365 1.25821 1.00264 0.97505 0.94043 1.69819 1.38220 1.09835 1.37575 0.85427 0.79374 0.78363 0.77991 1.18788 1.21007 1.20489 1.22384 0.94577 0.82697 0.98526 1.85765 1.06320 0.98086 1.67838 0.83948 0.88996 0.88934 0.87612 0.88701 0.75632 0.91316 0.88224 0.89495 0.89214 0.77578 0.92132 0.94741 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.03 113.37 1.14 0.03 16 2 S 0.05 0.59 22.96 -56.49 -1.30 -0.71 16 3 C -0.02 -0.33 7.85 130.47 1.02 0.70 16 4 N -0.29 -6.69 10.96 -54.83 -0.60 -7.29 16 5 N -0.25 -6.45 11.55 -47.71 -0.55 -7.00 16 6 C 0.00 0.04 7.16 88.48 0.63 0.67 16 7 C 0.23 5.45 6.30 85.64 0.54 5.98 16 8 N -0.73 -20.38 5.51 -482.31 -2.66 -23.04 16 9 C 0.72 28.00 8.49 179.05 1.52 29.52 16 10 O -0.63 -29.97 16.67 -3.97 -0.07 -30.04 16 11 N -0.63 -25.49 3.32 -829.33 -2.76 -28.25 16 12 C 0.11 3.40 6.58 86.93 0.57 3.97 16 13 C -0.11 -4.05 6.24 32.06 0.20 -3.85 16 14 C 0.23 11.09 0.85 -10.35 -0.01 11.09 16 15 O -0.59 -29.58 13.07 -148.98 -1.95 -31.52 16 16 C -0.55 -28.75 8.13 25.60 0.21 -28.54 16 17 H 0.07 3.44 7.78 -2.91 -0.02 3.41 16 18 C 0.02 1.29 5.28 84.65 0.45 1.73 16 19 N -0.92 -49.85 10.96 21.45 0.24 -49.61 16 20 Si 0.96 41.93 29.54 68.60 2.03 43.96 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.14 7.01 5.23 86.73 0.45 7.47 16 25 S 0.18 2.95 23.53 -56.49 -1.33 1.62 16 26 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.09 0.84 8.14 -2.40 -0.02 0.82 16 28 H 0.09 0.82 8.14 -2.40 -0.02 0.80 16 29 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.41 9.54 6.94 -92.70 -0.64 8.90 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.10 2.33 7.29 -2.39 -0.02 2.31 16 34 H 0.09 3.05 8.04 -2.39 -0.02 3.03 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.38 19.78 7.45 -74.06 -0.55 19.23 16 37 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 38 H 0.03 1.88 7.82 -2.38 -0.02 1.86 16 39 H 0.03 1.62 7.92 -2.39 -0.02 1.61 16 Total: -1.00 -68.71 360.06 -2.30 -71.01 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.08 Total: 32.10 kcal Atomic # 6 Polarization: 22.04 SS G_CDS: 6.73 Total: 28.77 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -6.33 Total: -115.19 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -2.01 Total: -61.56 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.63 Total: 0.91 kcal Total: -68.71 -2.30 -71.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771741668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.452 kcal (2) G-P(sol) polarization free energy of solvation -68.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds