Wall clock time and date at job start Wed Apr 1 2020 03:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 S 1.81001 * 109.46940 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99847 * 179.97438 * 16 15 13 18 18 N 1.32041 * 120.15026 * 0.02562 * 17 16 15 19 19 C 1.32631 * 122.62950 * 179.97438 * 18 17 16 20 20 C 1.36084 * 121.99776 * 359.97438 * 19 18 17 21 21 C 1.40868 * 118.87414 * 0.02562 * 20 19 18 22 22 C 1.40170 * 122.17713 * 180.02562 * 21 20 19 23 23 C 1.36303 * 119.48050 * 179.35291 * 22 21 20 24 24 C 1.39273 * 120.96620 * 0.55824 * 23 22 21 25 25 C 1.36327 * 121.03528 * 359.62337 * 24 23 22 26 26 C 1.40043 * 119.54001 * 359.97438 * 25 24 23 27 27 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 28 28 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 29 29 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 30 30 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 31 31 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 32 32 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 33 33 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 34 34 H 1.07997 * 118.99951 * 180.02562 * 19 18 17 35 35 H 1.08006 * 120.56165 * 179.97438 * 20 19 18 36 36 H 1.08006 * 120.25935 * 359.95544 * 22 21 20 37 37 H 1.07996 * 119.51471 * 180.16214 * 23 22 21 38 38 H 1.07995 * 119.48060 * 179.59698 * 24 23 22 39 39 H 1.07994 * 120.22605 * 179.97438 * 25 24 23 40 40 H 1.09003 * 113.76727 * 221.05145 * 27 12 11 41 41 H 1.09000 * 113.86995 * 89.67487 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 16 -1.0324 -7.6798 1.4325 17 6 -2.5607 -7.7081 2.3091 18 7 -3.1210 -6.5788 2.7017 19 6 -4.2698 -6.5427 3.3636 20 6 -4.9531 -7.6751 3.6843 21 6 -4.4215 -8.9220 3.3008 22 6 -5.0672 -10.1309 3.5945 23 6 -4.5100 -11.3056 3.1854 24 6 -3.3033 -11.3227 2.4903 25 6 -2.6477 -10.1652 2.1919 26 6 -3.1954 -8.9392 2.5895 27 6 2.1608 -3.7358 -0.1538 28 1 -0.4850 -0.8357 0.0860 29 1 -0.0835 -1.7161 -1.5945 30 1 0.8051 -2.6872 1.8427 31 1 -0.6172 -2.9282 0.7358 32 1 -0.6722 -5.5041 2.3901 33 1 -1.5571 -5.4077 0.8488 34 1 -4.6756 -5.5857 3.6563 35 1 -5.8867 -7.6187 4.2245 36 1 -6.0039 -10.1310 4.1322 37 1 -5.0084 -12.2372 3.4091 38 1 -2.8801 -12.2676 2.1832 39 1 -1.7125 -10.1937 1.6526 40 1 2.4415 -4.1971 -1.1007 41 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193140607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:50 Heat of formation + Delta-G solvation = 7.578397 kcal Electronic energy + Delta-G solvation = -26085.574392 eV Core-core repulsion = 22250.880307 eV Total energy + Delta-G solvation = -3834.694085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92757 -39.76723 -37.67698 -37.57144 -34.36231 -33.27593 -32.42849 -31.54128 -30.65856 -29.81113 -27.79970 -25.59570 -24.81357 -24.58594 -23.77936 -22.67996 -20.55430 -18.86718 -18.44552 -18.06692 -17.66306 -17.05209 -16.61648 -16.14367 -15.59361 -15.29797 -15.02880 -14.90473 -14.69849 -14.47012 -14.07900 -13.96973 -13.92972 -13.57724 -13.22794 -12.92056 -12.58253 -12.51512 -12.33674 -12.09669 -12.01522 -11.64739 -11.56421 -11.18232 -10.96340 -10.72988 -10.63662 -10.51861 -10.24409 -9.82416 -9.67578 -9.42653 -9.39128 -8.88013 -8.86094 -8.50356 -8.00809 -7.54497 -6.72477 -4.52245 0.02358 0.63246 1.25020 1.58290 2.00113 2.75205 2.90467 3.28511 3.31802 3.37082 3.50765 3.76225 4.25444 4.29325 4.31483 4.48487 4.59260 4.62161 4.72855 4.81959 4.87154 5.01764 5.09167 5.13357 5.27091 5.43834 5.47663 5.51274 5.62645 5.65275 5.78644 5.95545 6.08647 6.09417 6.10162 6.25538 6.29051 6.32384 6.36569 6.52624 6.71724 7.58982 7.60276 8.05158 8.17831 8.38602 8.44665 8.78814 9.18138 10.59069 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.022400 B = 0.002306 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.717536 B =12141.627232 C =13117.221057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.617 4.617 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.566 6.566 11 C 0.068 3.932 12 N -0.627 5.627 13 C 0.544 3.456 14 O -0.549 6.549 15 C -0.133 4.133 16 S 0.031 5.969 17 C 0.143 3.857 18 N -0.498 5.498 19 C 0.099 3.901 20 C -0.172 4.172 21 C -0.010 4.010 22 C -0.117 4.117 23 C -0.094 4.094 24 C -0.122 4.122 25 C -0.079 4.079 26 C -0.092 4.092 27 C 0.126 3.874 28 H 0.268 0.732 29 H 0.375 0.625 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 -17.057 8.584 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.169 4.169 3 Si 0.893 3.107 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.655 4.655 8 H 0.084 0.916 9 C 0.176 3.824 10 O -0.373 6.373 11 C -0.055 4.055 12 N -0.360 5.360 13 C 0.331 3.669 14 O -0.429 6.429 15 C -0.284 4.284 16 S 0.273 5.727 17 C -0.118 4.118 18 N -0.212 5.212 19 C -0.048 4.048 20 C -0.196 4.196 21 C -0.016 4.016 22 C -0.135 4.135 23 C -0.114 4.114 24 C -0.141 4.141 25 C -0.099 4.099 26 C -0.099 4.099 27 C 0.004 3.996 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.092 0.908 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.126 -16.603 7.521 20.384 hybrid contribution -1.591 -0.808 1.171 2.134 sum -10.717 -17.411 8.692 22.215 Atomic orbital electron populations 1.70953 1.06991 1.30705 1.44635 1.25993 0.96208 1.03064 0.91632 0.83578 0.75163 0.74928 0.76989 1.20551 1.21088 1.20975 1.22207 0.97844 0.91914 1.53550 0.91584 1.20129 0.88305 0.92947 0.81040 1.86254 1.57065 1.56327 1.37639 1.24568 0.99968 0.78491 1.02446 1.50075 1.25941 1.04128 1.55888 1.19273 0.85767 0.81989 0.79869 1.90683 1.58101 1.42609 1.51548 1.23618 1.00843 0.97621 1.06330 1.86141 1.15230 1.06602 1.64767 1.24037 0.99525 0.90748 0.97499 1.67962 1.12354 1.27508 1.13351 1.22171 0.90132 0.98796 0.93673 1.21784 1.01949 0.92170 1.03691 1.18094 0.93293 0.94480 0.95755 1.20950 1.00221 0.91285 1.01038 1.21014 0.95433 0.98283 0.96635 1.20929 0.95543 0.98425 0.99189 1.21019 0.99710 0.91208 0.97999 1.18439 0.96085 0.93495 1.01851 1.23349 0.89309 0.90157 0.96763 0.92010 0.77535 0.89210 0.91421 0.86279 0.86195 0.82633 0.84406 0.85024 0.85467 0.85303 0.84628 0.90773 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.27 12.80 55.43 0.71 -22.56 16 2 C 0.04 0.93 5.26 -17.82 -0.09 0.84 16 3 Si 1.07 22.48 29.93 -169.99 -5.09 17.40 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.62 -15.37 8.56 -34.44 -0.29 -15.67 16 8 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 9 C 0.22 5.02 1.08 -90.84 -0.10 4.92 16 10 O -0.57 -13.75 13.45 -35.23 -0.47 -14.23 16 11 C 0.07 1.41 7.05 -2.97 -0.02 1.38 16 12 N -0.63 -12.87 3.61 -178.27 -0.64 -13.51 16 13 C 0.54 10.81 8.08 -10.98 -0.09 10.73 16 14 O -0.55 -12.25 16.59 5.56 0.09 -12.15 16 15 C -0.13 -2.18 5.09 36.01 0.18 -2.00 16 16 S 0.03 0.47 19.71 -107.50 -2.12 -1.65 16 17 C 0.14 2.03 7.05 -16.29 -0.11 1.91 16 18 N -0.50 -7.05 9.13 -11.98 -0.11 -7.15 16 19 C 0.10 1.13 11.06 -17.98 -0.20 0.93 16 20 C -0.17 -1.70 9.87 -39.36 -0.39 -2.08 16 21 C -0.01 -0.11 5.74 -106.83 -0.61 -0.72 16 22 C -0.12 -0.97 9.81 -39.55 -0.39 -1.36 16 23 C -0.09 -0.71 9.95 -39.89 -0.40 -1.10 16 24 C -0.12 -1.03 9.95 -39.88 -0.40 -1.42 16 25 C -0.08 -0.85 9.42 -39.59 -0.37 -1.23 16 26 C -0.09 -1.15 5.75 -106.70 -0.61 -1.77 16 27 C 0.13 2.69 8.22 -2.97 -0.02 2.66 16 28 H 0.27 6.75 5.52 -40.82 -0.23 6.52 16 29 H 0.38 8.92 6.95 45.56 0.32 9.23 16 30 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 31 H 0.07 1.35 7.80 -51.92 -0.41 0.94 16 32 H 0.12 1.84 8.13 -51.92 -0.42 1.41 16 33 H 0.12 1.94 8.13 -51.92 -0.42 1.52 16 34 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.14 1.40 6.94 -52.49 -0.36 1.03 16 40 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -30.42 364.43 -10.17 -40.59 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.11 Total: 11.74 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.92 Total: -3.97 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.04 Total: -43.23 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.38 Total: -26.38 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.09 Total: 17.40 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.12 Total: -1.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.42 -10.17 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193140607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.172 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds