Wall clock time and date at job start Wed Apr 1 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46510 * 119.99857 * 2 1 4 4 C 1.53007 * 109.46637 * 276.12284 * 3 2 1 5 5 H 1.08995 * 112.96481 * 69.58012 * 4 3 2 6 6 C 1.53949 * 113.76592 * 297.89823 * 4 3 2 7 7 C 1.53951 * 86.28676 * 222.09419 * 6 4 3 8 8 N 1.47576 * 113.76461 * 201.25610 * 4 3 2 9 9 C 1.36939 * 134.49573 * 318.93604 * 8 4 3 10 10 H 1.08003 * 119.99814 * 5.98244 * 9 8 4 11 11 C 1.38816 * 120.00283 * 185.99469 * 9 8 4 12 12 N 1.31623 * 119.99594 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00037 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47118 * 60.00040 * 13 11 9 15 15 H 1.48508 * 109.46898 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47140 * 299.99437 * 13 11 9 17 17 C 1.34774 * 120.00598 * 179.97438 * 2 1 3 18 18 O 1.21583 * 120.00456 * 175.67083 * 17 2 1 19 19 C 1.47575 * 119.99540 * 355.66624 * 17 2 1 20 20 C 1.39735 * 120.13886 * 47.83472 * 19 17 2 21 21 C 1.37746 * 119.92804 * 179.97438 * 20 19 17 22 22 C 1.38732 * 120.20121 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.86236 * 179.97438 * 22 21 20 24 24 C 1.38579 * 120.27897 * 359.97438 * 22 21 20 25 25 Cl 1.73606 * 119.96779 * 180.02562 * 24 22 21 26 26 C 1.38301 * 120.06902 * 359.74224 * 24 22 21 27 27 F 1.35101 * 120.10299 * 180.27665 * 26 24 22 28 28 H 1.08997 * 109.47088 * 95.05690 * 1 2 3 29 29 H 1.09001 * 109.46687 * 215.05425 * 1 2 3 30 30 H 1.08997 * 109.47477 * 335.05627 * 1 2 3 31 31 H 1.08994 * 109.46994 * 156.12313 * 3 2 1 32 32 H 1.08998 * 109.46807 * 36.11975 * 3 2 1 33 33 H 1.08995 * 113.74412 * 336.43983 * 6 4 3 34 34 H 1.08995 * 113.73727 * 107.64588 * 6 4 3 35 35 H 1.08995 * 113.76836 * 137.90639 * 7 6 4 36 36 H 1.09000 * 113.77291 * 269.19834 * 7 6 4 37 37 H 0.96998 * 119.99477 * 180.02562 * 12 11 9 38 38 H 1.08000 * 120.03471 * 359.94632 * 20 19 17 39 39 H 1.08004 * 119.89725 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3192 1.7874 -1.4344 5 1 1.3673 2.1193 -1.8488 6 6 3.1097 0.8520 -2.3672 7 6 3.7718 2.1272 -2.9202 8 7 3.4202 2.7509 -1.6270 9 6 3.9161 3.7997 -0.8994 10 1 3.5307 4.0011 0.0892 11 6 4.9140 4.6041 -1.4325 12 7 5.3838 4.3584 -2.6372 13 14 5.5898 6.0351 -0.4402 14 1 6.1770 5.5263 0.8253 15 1 6.6390 6.7315 -1.2274 16 1 4.4913 6.9847 -0.1297 17 6 2.1390 -1.1671 0.0005 18 8 3.3522 -1.1686 -0.0790 19 6 1.4043 -2.4433 0.0977 20 6 0.2949 -2.6781 -0.7188 21 6 -0.3874 -3.8710 -0.6249 22 6 0.0232 -4.8405 0.2785 23 9 -0.6513 -6.0079 0.3653 24 6 1.1223 -4.6166 1.0923 25 17 1.6294 -5.8357 2.2195 26 6 1.8191 -3.4253 1.0034 27 9 2.8941 -3.2085 1.7925 28 1 -0.3633 -0.0906 -1.0236 29 1 -0.3633 -0.8413 0.5903 30 1 -0.3634 0.9318 0.4334 31 1 3.1929 1.1136 0.4159 32 1 1.6602 1.9985 0.6058 33 1 3.8000 0.1908 -1.8436 34 1 2.4878 0.3283 -3.0932 35 1 4.8448 2.0291 -3.0846 36 1 3.2486 2.5595 -3.7731 37 1 6.0813 4.9203 -3.0096 38 1 -0.0276 -1.9249 -1.4224 39 1 -1.2450 -4.0518 -1.2559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085800607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:55 Heat of formation + Delta-G solvation = -30.171279 kcal Electronic energy + Delta-G solvation = -27706.364218 eV Core-core repulsion = 23313.759948 eV Total energy + Delta-G solvation = -4392.604270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.60516 -49.38110 -40.50190 -38.80978 -37.60405 -37.02663 -35.40217 -32.19285 -31.54339 -31.17482 -28.47668 -27.79390 -26.72156 -24.29029 -23.73892 -23.24123 -22.34550 -20.00789 -18.97073 -18.69285 -18.02382 -17.64433 -16.77247 -16.64990 -16.30071 -16.19909 -15.72270 -15.50474 -15.43482 -14.93998 -14.75176 -14.34538 -13.96914 -13.58416 -13.34066 -13.18982 -13.09313 -13.05503 -12.74591 -12.36668 -12.25174 -12.09413 -11.76540 -11.55609 -11.35979 -11.01637 -10.88409 -10.66920 -10.45870 -10.00368 -9.83412 -9.69084 -9.47057 -9.40660 -9.30614 -8.76626 -8.45195 -6.82544 -5.72731 -3.04587 0.03760 0.27480 1.35587 2.32599 2.79134 2.97898 3.13414 3.42071 3.46168 3.47432 3.70130 3.99186 4.02403 4.29458 4.49769 4.78505 4.93363 4.96951 5.15999 5.22356 5.23272 5.30617 5.40529 5.45897 5.52302 5.56990 5.84446 5.91172 5.93523 6.09050 6.35181 6.51153 6.62871 6.75385 6.81214 7.29565 7.34583 7.54210 7.63955 8.02291 8.12214 9.08123 9.75257 10.65922 11.44995 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.002577 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.783714 B =10863.749083 C =11366.518778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.598 5.598 3 C 0.115 3.885 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.161 4.161 7 C 0.165 3.835 8 N -0.599 5.599 9 C -0.225 4.225 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.556 3.444 18 O -0.503 6.503 19 C -0.155 4.155 20 C -0.028 4.028 21 C -0.157 4.157 22 C 0.156 3.844 23 F -0.115 7.115 24 C -0.127 4.127 25 Cl -0.023 7.023 26 C 0.188 3.812 27 F -0.100 7.100 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.254 0.746 38 H 0.161 0.839 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 -19.435 5.245 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.331 5.331 3 C -0.008 4.008 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.199 4.199 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.342 3.658 18 O -0.378 6.378 19 C -0.160 4.160 20 C -0.047 4.047 21 C -0.176 4.176 22 C 0.136 3.864 23 F -0.093 7.093 24 C -0.156 4.156 25 Cl 0.006 6.994 26 C 0.167 3.833 27 F -0.077 7.077 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.178 0.822 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.699 -19.257 5.398 25.425 hybrid contribution 0.283 0.633 0.690 0.978 sum -15.416 -18.624 6.088 24.932 Atomic orbital electron populations 1.22022 0.79897 1.03496 1.01741 1.47688 1.06815 1.06126 1.72484 1.21972 0.97861 0.81740 0.99179 1.22513 0.92711 0.90172 0.92619 0.94081 1.23864 0.99678 0.97793 0.98598 1.22126 0.99293 0.86451 0.88110 1.45976 1.31744 1.34504 1.20341 1.18927 1.15848 1.03631 0.96833 0.90441 1.24798 0.99786 0.99139 0.96562 1.69829 1.30650 1.40478 1.15636 0.86243 0.78427 0.82291 0.79059 1.21058 1.21596 1.21237 1.17720 0.87129 0.82821 0.78174 1.90895 1.12848 1.86401 1.47614 1.20162 0.99386 0.96315 1.00128 1.21353 0.90777 0.96643 0.95883 1.21145 1.03318 0.92927 1.00191 1.17254 0.90170 0.83256 0.95769 1.91592 1.78068 1.44726 1.94929 1.20843 1.00073 0.93454 1.01189 1.98420 1.90256 1.52233 1.58502 1.16961 0.84730 0.91270 0.90371 1.91657 1.50893 1.94433 1.70763 0.92126 0.91397 0.90276 0.88638 0.91079 0.89393 0.93991 0.91695 0.95605 0.93625 0.82185 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 9.08 59.85 0.54 1.14 16 2 N -0.60 -7.98 2.75 -182.79 -0.50 -8.49 16 3 C 0.12 1.98 5.44 -4.03 -0.02 1.96 16 4 C 0.13 2.54 4.59 -66.86 -0.31 2.23 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.16 -3.23 7.21 -25.79 -0.19 -3.41 16 7 C 0.17 4.04 7.38 -2.84 -0.02 4.02 16 8 N -0.60 -15.35 3.58 -169.70 -0.61 -15.96 16 9 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 10 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 11 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -27.76 11.57 55.49 0.64 -27.12 16 13 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.56 8.23 6.60 -12.45 -0.08 8.14 16 18 O -0.50 -9.78 14.26 5.29 0.08 -9.70 16 19 C -0.16 -1.73 4.93 -104.91 -0.52 -2.25 16 20 C -0.03 -0.20 7.75 -39.20 -0.30 -0.51 16 21 C -0.16 -0.94 10.00 -39.58 -0.40 -1.34 16 22 C 0.16 1.28 7.28 -39.27 -0.29 1.00 16 23 F -0.12 -0.97 16.82 2.25 0.04 -0.93 16 24 C -0.13 -1.28 6.32 -39.43 -0.25 -1.53 16 25 Cl -0.02 -0.24 28.26 -51.86 -1.47 -1.70 16 26 C 0.19 2.23 7.22 -38.94 -0.28 1.95 16 27 F -0.10 -1.42 16.03 2.25 0.04 -1.39 16 28 H 0.06 0.39 7.02 -51.93 -0.36 0.03 16 29 H 0.07 0.44 6.24 -51.93 -0.32 0.11 16 30 H 0.08 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.10 1.97 7.30 -51.93 -0.38 1.59 16 32 H 0.07 1.12 7.96 -51.93 -0.41 0.70 16 33 H 0.09 1.92 6.25 -51.93 -0.32 1.59 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.76 7.46 -51.93 -0.39 1.37 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.16 0.82 6.18 -52.49 -0.32 0.50 16 39 H 0.16 0.48 8.06 -52.48 -0.42 0.05 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -33.91 348.90 -8.08 -41.99 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -4.16 Total: -3.96 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -2.36 Total: 4.68 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.47 Total: -51.57 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.07 Total: -2.32 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.47 Total: -1.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.91 -8.08 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085800607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.821 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds