Wall clock time and date at job start Wed Apr 1 2020 03:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46510 * 119.99857 * 2 1 4 4 C 1.53007 * 109.46637 * 276.12284 * 3 2 1 5 5 H 1.08995 * 112.96481 * 69.58012 * 4 3 2 6 6 C 1.53949 * 113.76592 * 297.89823 * 4 3 2 7 7 C 1.53951 * 86.28676 * 222.09419 * 6 4 3 8 8 N 1.47576 * 113.76461 * 201.25610 * 4 3 2 9 9 C 1.36939 * 134.49573 * 318.93604 * 8 4 3 10 10 H 1.08003 * 119.99814 * 5.98244 * 9 8 4 11 11 C 1.38816 * 120.00283 * 185.99469 * 9 8 4 12 12 N 1.31623 * 119.99594 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00037 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.47118 * 60.00040 * 13 11 9 15 15 H 1.48508 * 109.46898 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47140 * 299.99437 * 13 11 9 17 17 C 1.34774 * 120.00598 * 179.97438 * 2 1 3 18 18 O 1.21583 * 120.00456 * 175.67083 * 17 2 1 19 19 C 1.47575 * 119.99540 * 355.66624 * 17 2 1 20 20 C 1.39735 * 120.13886 * 47.83472 * 19 17 2 21 21 C 1.37746 * 119.92804 * 179.97438 * 20 19 17 22 22 C 1.38732 * 120.20121 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.86236 * 179.97438 * 22 21 20 24 24 C 1.38579 * 120.27897 * 359.97438 * 22 21 20 25 25 Cl 1.73606 * 119.96779 * 180.02562 * 24 22 21 26 26 C 1.38301 * 120.06902 * 359.74224 * 24 22 21 27 27 F 1.35101 * 120.10299 * 180.27665 * 26 24 22 28 28 H 1.08997 * 109.47088 * 95.05690 * 1 2 3 29 29 H 1.09001 * 109.46687 * 215.05425 * 1 2 3 30 30 H 1.08997 * 109.47477 * 335.05627 * 1 2 3 31 31 H 1.08994 * 109.46994 * 156.12313 * 3 2 1 32 32 H 1.08998 * 109.46807 * 36.11975 * 3 2 1 33 33 H 1.08995 * 113.74412 * 336.43983 * 6 4 3 34 34 H 1.08995 * 113.73727 * 107.64588 * 6 4 3 35 35 H 1.08995 * 113.76836 * 137.90639 * 7 6 4 36 36 H 1.09000 * 113.77291 * 269.19834 * 7 6 4 37 37 H 0.96998 * 119.99477 * 180.02562 * 12 11 9 38 38 H 1.08000 * 120.03471 * 359.94632 * 20 19 17 39 39 H 1.08004 * 119.89725 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3192 1.7874 -1.4344 5 1 1.3673 2.1193 -1.8488 6 6 3.1097 0.8520 -2.3672 7 6 3.7718 2.1272 -2.9202 8 7 3.4202 2.7509 -1.6270 9 6 3.9161 3.7997 -0.8994 10 1 3.5307 4.0011 0.0892 11 6 4.9140 4.6041 -1.4325 12 7 5.3838 4.3584 -2.6372 13 14 5.5898 6.0351 -0.4402 14 1 6.1770 5.5263 0.8253 15 1 6.6390 6.7315 -1.2274 16 1 4.4913 6.9847 -0.1297 17 6 2.1390 -1.1671 0.0005 18 8 3.3522 -1.1686 -0.0790 19 6 1.4043 -2.4433 0.0977 20 6 0.2949 -2.6781 -0.7188 21 6 -0.3874 -3.8710 -0.6249 22 6 0.0232 -4.8405 0.2785 23 9 -0.6513 -6.0079 0.3653 24 6 1.1223 -4.6166 1.0923 25 17 1.6294 -5.8357 2.2195 26 6 1.8191 -3.4253 1.0034 27 9 2.8941 -3.2085 1.7925 28 1 -0.3633 -0.0906 -1.0236 29 1 -0.3633 -0.8413 0.5903 30 1 -0.3634 0.9318 0.4334 31 1 3.1929 1.1136 0.4159 32 1 1.6602 1.9985 0.6058 33 1 3.8000 0.1908 -1.8436 34 1 2.4878 0.3283 -3.0932 35 1 4.8448 2.0291 -3.0846 36 1 3.2486 2.5595 -3.7731 37 1 6.0813 4.9203 -3.0096 38 1 -0.0276 -1.9249 -1.4224 39 1 -1.2450 -4.0518 -1.2559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085800607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:54 Heat of formation + Delta-G solvation = -51.176455 kcal Electronic energy + Delta-G solvation = -27707.275071 eV Core-core repulsion = 23313.759948 eV Total energy + Delta-G solvation = -4393.515122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.32655 -50.23610 -41.52506 -39.88857 -39.07850 -37.80822 -36.57179 -34.22712 -32.43656 -31.87595 -29.83068 -29.69844 -27.61566 -25.43630 -25.11798 -24.44989 -23.69319 -21.16513 -20.66201 -19.44105 -18.82548 -18.76202 -18.35153 -17.67558 -17.27397 -17.10917 -16.85704 -16.60143 -16.44243 -16.28520 -15.80127 -15.64062 -15.35700 -15.10084 -14.27839 -14.20247 -13.99401 -13.92884 -13.86112 -13.75713 -13.36910 -13.16995 -12.94905 -12.85165 -12.64942 -12.53004 -12.42424 -12.30430 -12.25958 -11.82080 -11.57832 -11.24335 -11.06127 -10.82597 -10.10948 -10.06178 -9.68201 -8.85941 -7.88305 -5.20374 -0.67835 -0.40912 0.61619 1.43640 1.44633 1.48683 1.53950 1.79246 2.10760 2.40466 2.50445 2.99853 3.14304 3.34274 3.43307 3.46850 3.64106 3.92728 4.06829 4.24556 4.32514 4.35375 4.36368 4.51725 4.53307 4.62931 4.75493 4.79907 4.82614 4.87982 4.99125 5.05187 5.11788 5.25172 5.32714 5.48338 5.55276 5.78745 5.96384 6.31234 6.93380 7.03860 7.64311 8.61249 9.29969 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.002577 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.783714 B =10863.749083 C =11366.518778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.592 5.592 3 C 0.128 3.872 4 C 0.137 3.863 5 H 0.070 0.930 6 C -0.135 4.135 7 C 0.159 3.841 8 N -0.631 5.631 9 C -0.227 4.227 10 H 0.087 0.913 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.976 3.024 14 H -0.280 1.280 15 H -0.297 1.297 16 H -0.272 1.272 17 C 0.552 3.448 18 O -0.564 6.564 19 C -0.166 4.166 20 C -0.010 4.010 21 C -0.127 4.127 22 C 0.159 3.841 23 F -0.114 7.114 24 C -0.135 4.135 25 Cl -0.033 7.033 26 C 0.161 3.839 27 F -0.126 7.126 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.246 0.754 38 H 0.193 0.807 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 -20.215 4.991 29.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.324 5.324 3 C 0.004 3.996 4 C 0.031 3.969 5 H 0.088 0.912 6 C -0.173 4.173 7 C 0.033 3.967 8 N -0.357 5.357 9 C -0.356 4.356 10 H 0.105 0.895 11 C -0.265 4.265 12 N -0.607 5.607 13 Si 0.804 3.196 14 H -0.206 1.206 15 H -0.224 1.224 16 H -0.197 1.197 17 C 0.340 3.660 18 O -0.443 6.443 19 C -0.170 4.170 20 C -0.028 4.028 21 C -0.145 4.145 22 C 0.139 3.861 23 F -0.092 7.092 24 C -0.163 4.163 25 Cl -0.004 7.004 26 C 0.140 3.860 27 F -0.104 7.104 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.210 0.790 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -19.949 -20.065 5.173 28.763 hybrid contribution 1.457 0.760 0.760 1.810 sum -18.492 -19.305 5.932 27.383 Atomic orbital electron populations 1.22459 0.76140 1.05231 1.04334 1.47694 1.08895 1.04226 1.71582 1.21514 0.96783 0.83951 0.97342 1.22694 0.92115 0.87913 0.94178 0.91249 1.23561 0.99160 0.95898 0.98714 1.22067 0.97243 0.89155 0.88229 1.46332 1.34023 1.34751 1.20636 1.19379 1.15307 1.03488 0.97393 0.89502 1.25656 1.00824 1.02202 0.97817 1.70029 1.31513 1.41645 1.17475 0.85188 0.77722 0.79260 0.77420 1.20641 1.22367 1.19735 1.18277 0.86636 0.84196 0.76872 1.90871 1.15687 1.87378 1.50349 1.19945 1.00900 0.94427 1.01753 1.21693 0.88739 0.97703 0.94672 1.21580 1.03332 0.90971 0.98615 1.17468 0.89368 0.83721 0.95584 1.91605 1.77830 1.44880 1.94895 1.20922 1.00835 0.92818 1.01768 1.98413 1.90528 1.52390 1.59029 1.17234 0.84911 0.92498 0.91335 1.91584 1.52393 1.94720 1.71729 0.89012 0.89155 0.89216 0.93042 0.89257 0.91540 0.90101 0.95810 0.95853 0.94487 0.79010 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 9.08 127.77 1.16 1.85 16 2 N -0.59 -14.44 2.75 -850.49 -2.34 -16.78 16 3 C 0.13 4.27 5.44 86.38 0.47 4.74 16 4 C 0.14 5.23 4.59 45.10 0.21 5.44 16 5 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 6 C -0.14 -5.32 7.21 31.25 0.23 -5.10 16 7 C 0.16 7.93 7.38 86.44 0.64 8.57 16 8 N -0.63 -32.63 3.58 -690.81 -2.47 -35.11 16 9 C -0.23 -12.85 10.51 84.03 0.88 -11.96 16 10 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 11 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 12 N -0.96 -60.00 11.57 21.65 0.25 -59.75 16 13 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 C 0.55 15.89 6.60 86.71 0.57 16.46 16 18 O -0.56 -22.81 14.26 -3.98 -0.06 -22.86 16 19 C -0.17 -3.36 4.93 -20.05 -0.10 -3.46 16 20 C -0.01 -0.09 7.75 22.52 0.17 0.08 16 21 C -0.13 -0.81 10.00 22.27 0.22 -0.59 16 22 C 0.16 2.07 7.28 22.47 0.16 2.23 16 23 F -0.11 -1.54 16.82 44.97 0.76 -0.79 16 24 C -0.13 -2.55 6.32 22.37 0.14 -2.41 16 25 Cl -0.03 -0.65 28.26 -2.72 -0.08 -0.73 16 26 C 0.16 3.76 7.22 22.68 0.16 3.93 16 27 F -0.13 -3.82 16.03 44.97 0.72 -3.09 16 28 H 0.09 0.56 7.02 -2.39 -0.02 0.55 16 29 H 0.09 0.69 6.24 -2.39 -0.01 0.68 16 30 H 0.09 0.92 7.90 -2.39 -0.02 0.90 16 31 H 0.05 2.19 7.30 -2.39 -0.02 2.17 16 32 H 0.09 2.63 7.96 -2.39 -0.02 2.61 16 33 H 0.07 2.96 6.25 -2.39 -0.01 2.95 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 35 H 0.02 1.35 7.46 -2.39 -0.02 1.34 16 36 H 0.02 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.19 0.63 6.18 -2.91 -0.02 0.62 16 39 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: -1.00 -80.97 348.90 5.30 -75.66 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: 1.11 Total: -1.44 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 5.39 Total: 16.00 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.56 Total: -111.64 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 1.48 Total: -3.88 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -80.97 5.30 -75.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085800607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.486 kcal (2) G-P(sol) polarization free energy of solvation -80.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds