Wall clock time and date at job start Wed Apr 1 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47095 * 2 1 4 4 C 1.50694 * 109.47166 * 120.00765 * 2 1 3 5 5 H 1.08000 * 120.00461 * 120.00320 * 4 2 1 6 6 C 1.37877 * 120.00012 * 299.99402 * 4 2 1 7 7 N 1.31521 * 119.99826 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00268 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47034 * 90.00452 * 8 6 4 10 10 H 1.48503 * 109.47224 * 210.00306 * 8 6 4 11 11 H 1.48507 * 109.47256 * 330.00479 * 8 6 4 12 12 S 1.81409 * 109.47130 * 240.00745 * 2 1 3 13 13 C 1.76196 * 102.99999 * 69.53915 * 12 2 1 14 14 C 1.38778 * 120.10915 * 6.03555 * 13 12 2 15 15 C 1.38203 * 119.99123 * 180.29128 * 14 13 12 16 16 C 1.38299 * 120.20701 * 359.68183 * 15 14 13 17 17 C 1.38242 * 120.21004 * 0.02562 * 16 15 14 18 18 C 1.38677 * 120.00815 * 0.02562 * 17 16 15 19 19 N 1.40047 * 120.10087 * 179.97438 * 18 17 16 20 20 C 1.34773 * 120.00238 * 20.22138 * 19 18 17 21 21 O 1.21557 * 119.99838 * 4.56068 * 20 19 18 22 22 C 1.47936 * 119.99823 * 184.55589 * 20 19 18 23 23 C 1.39444 * 119.74680 * 354.57917 * 22 20 19 24 24 C 1.38456 * 119.06772 * 180.22864 * 23 22 20 25 25 C 1.38734 * 118.53060 * 359.50255 * 24 23 22 26 26 C 1.38398 * 119.39777 * 0.49411 * 25 24 23 27 27 N 1.31729 * 120.90502 * 359.75303 * 26 25 24 28 28 O 1.41591 * 119.20962 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.46962 * 306.42113 * 1 2 3 30 30 H 1.08996 * 109.46735 * 66.42196 * 1 2 3 31 31 H 1.08993 * 109.46842 * 186.41869 * 1 2 3 32 32 H 0.97003 * 119.99860 * 179.97438 * 7 6 4 33 33 H 1.08009 * 120.00509 * 359.97347 * 14 13 12 34 34 H 1.08004 * 119.89537 * 179.70418 * 15 14 13 35 35 H 1.07997 * 119.89822 * 180.02562 * 16 15 14 36 36 H 1.08008 * 119.99746 * 179.97438 * 17 16 15 37 37 H 0.97007 * 119.99929 * 200.22684 * 19 18 17 38 38 H 1.08007 * 120.46511 * 359.95074 * 23 22 20 39 39 H 1.07992 * 120.73172 * 179.72460 * 24 23 22 40 40 H 1.07997 * 120.30068 * 180.26904 * 25 24 23 41 41 H 1.08002 * 119.55020 * 179.76510 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1199 4.0077 9 1 3.6306 -0.5443 4.4117 10 1 1.3446 -0.9494 5.1121 11 1 2.4882 -2.5657 3.7119 12 16 2.1347 -0.8550 -1.4813 13 6 1.7011 0.2513 -2.7823 14 6 1.1649 1.4969 -2.4872 15 6 0.8200 2.3603 -3.5097 16 6 1.0134 1.9901 -4.8281 17 6 1.5525 0.7538 -5.1315 18 6 1.9007 -0.1200 -4.1125 19 7 2.4465 -1.3731 -4.4176 20 6 3.0092 -1.5876 -5.6233 21 8 3.1178 -0.6715 -6.4150 22 6 3.4948 -2.9378 -5.9833 23 6 3.4719 -3.9576 -5.0324 24 6 3.9342 -5.2147 -5.3830 25 6 4.3948 -5.4144 -6.6764 26 6 4.3893 -4.3579 -7.5702 27 7 3.9489 -3.1696 -7.2105 28 8 3.9590 -2.1142 -8.1543 29 1 -0.3633 0.6101 0.8269 30 1 -0.3633 0.4111 -0.9419 31 1 -0.3633 -1.0212 0.1149 32 1 0.7084 1.1606 3.4845 33 1 1.0125 1.7894 -1.4588 34 1 0.3984 3.3274 -3.2784 35 1 0.7425 2.6689 -5.6232 36 1 1.7016 0.4680 -6.1624 37 1 2.4194 -2.0868 -3.7612 38 1 3.1030 -3.7682 -4.0351 39 1 3.9329 -6.0228 -4.6666 40 1 4.7577 -6.3847 -6.9818 41 1 4.7508 -4.5096 -8.5766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066855949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:56 Heat of formation + Delta-G solvation = 69.654957 kcal Electronic energy + Delta-G solvation = -26552.601392 eV Core-core repulsion = 22720.599149 eV Total energy + Delta-G solvation = -3832.002243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90226 -40.13707 -38.03045 -35.39100 -34.54149 -34.17046 -32.62441 -31.14575 -30.05177 -29.99280 -29.29332 -25.63777 -25.43209 -24.60124 -22.99443 -22.48630 -21.44333 -20.77514 -18.97800 -17.98904 -17.41412 -17.18700 -16.55249 -16.26775 -16.09442 -15.91950 -15.30986 -15.25585 -14.83625 -14.63345 -14.29399 -13.96510 -13.56702 -13.45189 -13.04261 -12.78673 -12.66969 -12.40086 -12.03138 -11.80934 -11.65242 -11.50191 -11.14711 -11.09693 -10.66193 -10.57677 -10.49402 -10.18063 -10.15478 -9.80296 -9.51887 -9.24643 -9.15037 -9.04541 -8.72341 -8.60725 -8.00790 -6.65011 -6.29999 -4.39202 -0.24191 0.18504 1.49067 1.69783 1.97016 2.31891 2.35465 2.84985 3.06830 3.16222 3.23296 3.25833 3.50524 3.87440 3.97240 4.04370 4.07840 4.11010 4.22452 4.38864 4.75770 5.02944 5.10538 5.25632 5.27351 5.32585 5.35244 5.55070 5.75224 5.79756 6.16792 6.24612 6.43535 6.49999 6.56168 6.65362 6.67293 6.70704 6.73976 6.87259 7.23719 7.28192 7.32598 7.51890 7.67673 7.90546 7.94231 8.59274 9.25391 10.76499 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.003143 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.331503 B = 8906.431035 C =10925.241220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.514 4.514 5 H 0.067 0.933 6 C 0.072 3.928 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.272 1.272 12 S -0.183 6.183 13 C -0.091 4.091 14 C -0.112 4.112 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.125 4.125 18 C 0.150 3.850 19 N -0.649 5.649 20 C 0.550 3.450 21 O -0.449 6.449 22 C 0.052 3.948 23 C -0.086 4.086 24 C -0.086 4.086 25 C -0.100 4.100 26 C 0.063 3.937 27 N -0.089 5.089 28 O -0.494 6.494 29 H 0.091 0.909 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.267 0.733 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.152 0.848 37 H 0.412 0.588 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.169 0.831 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -12.423 -12.965 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.071 0.929 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.064 5.936 13 C -0.206 4.206 14 C -0.136 4.136 15 C -0.139 4.139 16 C -0.140 4.140 17 C -0.146 4.146 18 C 0.050 3.950 19 N -0.296 5.296 20 C 0.334 3.666 21 O -0.318 6.318 22 C -0.077 4.077 23 C -0.105 4.105 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.083 4.083 27 N 0.234 4.766 28 O -0.554 6.554 29 H 0.110 0.890 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.250 0.750 38 H 0.185 0.815 39 H 0.180 0.820 40 H 0.186 0.814 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.319 -12.495 -13.642 18.795 hybrid contribution -0.295 0.476 1.194 1.319 sum 3.024 -12.020 -12.448 17.566 Atomic orbital electron populations 1.22119 0.96149 1.01588 1.00195 1.21095 0.95613 0.97296 0.88286 0.92934 1.20601 1.32828 1.13338 0.88561 0.91483 1.24887 0.94577 0.94936 0.98868 1.69874 1.35618 1.22444 1.24250 0.86348 0.78684 0.79958 0.81642 1.20330 1.20922 1.19626 1.84830 1.75183 1.31716 1.01881 1.21651 1.05085 0.98985 0.94928 1.21285 0.99438 0.92297 1.00602 1.21069 1.00728 0.99504 0.92605 1.20979 1.00350 0.96319 0.96342 1.21509 0.99245 0.94049 0.99844 1.17147 1.00105 0.85889 0.91871 1.43227 1.57181 1.13632 1.15591 1.17425 0.79849 0.86749 0.82564 1.90863 1.50745 1.41627 1.48568 1.20782 1.03176 0.97088 0.86622 1.22096 0.96753 0.91784 0.99895 1.21830 0.95095 0.97352 0.96815 1.22075 0.97141 0.99709 0.92911 1.22780 0.99086 0.83547 1.02888 1.43267 1.15906 1.09809 1.07580 1.97754 1.87770 1.28863 1.40994 0.89024 0.96030 0.93925 0.92340 0.84325 0.86067 0.86003 0.83036 0.74990 0.81510 0.81986 0.81396 0.79494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.37 37.16 0.31 -2.82 16 2 C 0.10 2.42 1.98 -27.88 -0.06 2.36 16 3 H 0.05 1.32 6.87 -51.93 -0.36 0.96 16 4 C -0.51 -13.03 8.58 -34.44 -0.30 -13.33 16 5 H 0.07 1.70 7.71 -52.49 -0.40 1.29 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -23.23 11.39 55.43 0.63 -22.60 16 8 Si 0.91 19.80 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 S -0.18 -3.59 19.88 -107.50 -2.14 -5.72 16 13 C -0.09 -1.70 5.97 -38.90 -0.23 -1.93 16 14 C -0.11 -2.03 8.01 -39.39 -0.32 -2.35 16 15 C -0.12 -1.87 10.04 -39.57 -0.40 -2.27 16 16 C -0.12 -1.83 10.04 -39.56 -0.40 -2.23 16 17 C -0.13 -2.16 8.78 -39.42 -0.35 -2.50 16 18 C 0.15 2.63 6.51 -83.46 -0.54 2.08 16 19 N -0.65 -9.75 5.18 -10.54 -0.05 -9.81 16 20 C 0.55 8.84 7.61 -12.29 -0.09 8.75 16 21 O -0.45 -9.04 11.74 -17.75 -0.21 -9.25 16 22 C 0.05 0.65 6.70 -82.98 -0.56 0.09 16 23 C -0.09 -0.64 9.57 -39.05 -0.37 -1.01 16 24 C -0.09 -0.35 10.16 -39.32 -0.40 -0.75 16 25 C -0.10 -0.37 10.11 -39.34 -0.40 -0.77 16 26 C 0.06 0.50 10.68 -17.54 -0.19 0.32 16 27 N -0.09 -1.24 3.60 -9.79 -0.04 -1.27 16 28 O -0.49 -10.31 17.78 -34.53 -0.61 -10.93 16 29 H 0.09 2.21 6.27 -51.93 -0.33 1.89 16 30 H 0.02 0.43 6.07 -51.93 -0.32 0.11 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.14 2.67 4.99 -52.48 -0.26 2.41 16 34 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.15 2.74 5.42 -52.48 -0.28 2.46 16 37 H 0.41 5.19 5.54 -40.82 -0.23 4.97 16 38 H 0.17 0.93 6.41 -52.48 -0.34 0.60 16 39 H 0.16 0.12 8.06 -52.49 -0.42 -0.31 16 40 H 0.17 -0.06 8.06 -52.49 -0.42 -0.48 16 41 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -36.57 354.87 -10.65 -47.22 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.18 Total: 6.84 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -4.37 Total: -14.61 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.54 Total: -33.67 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.82 Total: -20.18 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.14 Total: -5.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.57 -10.65 -47.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066855949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.873 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds