Wall clock time and date at job start Wed Apr 1 2020 03:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47016 * 2 1 4 4 C 1.50701 * 109.47290 * 239.99916 * 2 1 3 5 5 H 1.08000 * 119.99629 * 240.00338 * 4 2 1 6 6 C 1.37875 * 119.99939 * 59.99781 * 4 2 1 7 7 N 1.31517 * 119.99841 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47162 * 59.99896 * 8 6 4 10 10 H 1.48498 * 109.46983 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46947 * 300.00283 * 8 6 4 12 12 N 1.46504 * 109.47089 * 119.99670 * 2 1 3 13 13 C 1.46494 * 119.99874 * 59.99906 * 12 2 1 14 14 C 1.34780 * 119.99735 * 240.00130 * 12 2 1 15 15 O 1.21584 * 120.00321 * 359.97438 * 14 12 2 16 16 N 1.34779 * 119.99519 * 179.97438 * 14 12 2 17 17 C 1.39942 * 119.99783 * 174.34412 * 16 14 12 18 18 C 1.38896 * 120.05664 * 337.43917 * 17 16 14 19 19 C 1.38108 * 119.97831 * 179.74186 * 18 17 16 20 20 C 1.38266 * 120.09351 * 0.50874 * 19 18 17 21 21 C 1.38493 * 120.11456 * 359.76692 * 20 19 18 22 22 F 1.35101 * 119.98950 * 179.97438 * 21 20 19 23 23 C 1.38352 * 120.01584 * 359.97438 * 21 20 19 24 24 S 1.76200 * 120.04586 * 180.02562 * 23 21 20 25 25 C 1.81403 * 104.44771 * 259.51309 * 24 23 21 26 26 O 1.42102 * 104.27689 * 15.58198 * 24 23 21 27 27 O 1.42095 * 104.28063 * 143.44290 * 24 23 21 28 28 H 1.08998 * 109.47611 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47352 * 300.00230 * 1 2 3 30 30 H 1.09000 * 109.47463 * 59.99785 * 1 2 3 31 31 H 0.97004 * 119.99441 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46759 * 89.99970 * 13 12 2 33 33 H 1.09001 * 109.47126 * 209.99636 * 13 12 2 34 34 H 1.08997 * 109.47427 * 330.00314 * 13 12 2 35 35 H 0.97001 * 119.99975 * 354.35514 * 16 14 12 36 36 H 1.08000 * 120.01529 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.95214 * 180.23567 * 19 18 17 38 38 H 1.08001 * 119.94093 * 179.74573 * 20 19 18 39 39 H 1.08997 * 109.47198 * 60.00328 * 25 24 23 40 40 H 1.09005 * 109.46760 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47447 * 299.99705 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8269 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0872 1.1285 1.8907 16 7 3.2419 -0.6706 3.1841 17 6 4.1412 -0.0299 4.0439 18 6 4.9266 1.0156 3.5756 19 6 5.8097 1.6503 4.4269 20 6 5.9209 1.2396 5.7424 21 6 5.1439 0.1938 6.2119 22 9 5.2550 -0.2058 7.4977 23 6 4.2538 -0.4418 5.3646 24 16 3.2643 -1.7721 5.9613 25 6 4.1095 -3.2649 5.3714 26 8 3.3584 -1.6718 7.3756 27 8 2.0192 -1.6084 5.2964 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.7089 1.1613 -3.4844 32 1 2.4157 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6904 -2.3001 0.9848 35 1 2.9417 -1.5719 3.3803 36 1 4.8440 1.3347 2.5471 37 1 6.4174 2.4657 4.0633 38 1 6.6153 1.7350 6.4049 39 1 5.1201 -3.2951 5.7785 40 1 3.5596 -4.1471 5.6992 41 1 4.1566 -3.2495 4.2825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603041919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:07 Heat of formation + Delta-G solvation = -84.511590 kcal Electronic energy + Delta-G solvation = -29025.405737 eV Core-core repulsion = 24755.949106 eV Total energy + Delta-G solvation = -4269.456631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.14888 -40.69466 -38.58019 -37.34390 -36.15479 -35.71850 -34.71072 -32.89257 -31.15197 -30.04847 -29.85606 -28.75418 -26.34426 -25.27223 -23.67038 -23.50239 -21.27637 -19.67381 -19.31533 -18.43077 -17.66401 -17.48832 -16.63892 -16.52668 -16.32107 -15.78226 -15.64411 -15.58169 -15.29880 -14.93446 -14.78616 -14.29367 -13.73218 -13.56802 -13.46927 -13.29366 -13.10483 -12.70863 -12.67278 -12.63489 -12.28815 -12.17340 -12.05880 -11.63838 -11.61283 -11.33216 -11.12129 -10.93877 -10.87314 -10.76040 -10.51537 -10.28542 -10.22344 -9.56513 -9.38976 -9.20663 -8.49968 -8.27667 -7.71629 -6.13554 -4.22153 -0.24950 0.57710 1.07119 2.50918 2.76193 3.15918 3.23392 3.29247 3.30334 3.55214 3.72880 3.81168 4.02074 4.18740 4.35645 4.41651 4.44355 4.71177 4.86857 5.16000 5.18217 5.20762 5.27561 5.47210 5.52373 5.79534 5.90069 5.93728 6.14247 6.25120 6.33268 6.55371 6.75426 6.82980 6.87968 7.02419 7.32938 7.56843 7.66655 7.95783 8.10510 8.41965 8.75075 8.94352 9.44363 10.91718 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.003321 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.732984 B = 8428.361931 C = 9121.765787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.271 3.729 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.076 3.924 14 C 0.700 3.300 15 O -0.568 6.568 16 N -0.685 5.685 17 C 0.310 3.690 18 C -0.167 4.167 19 C -0.015 4.015 20 C -0.207 4.207 21 C 0.211 3.789 22 F -0.112 7.112 23 C -0.753 4.753 24 S 2.495 3.505 25 C -0.656 4.656 26 O -0.924 6.924 27 O -0.928 6.928 28 H 0.031 0.969 29 H 0.014 0.986 30 H 0.096 0.904 31 H 0.265 0.735 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.404 0.596 36 H 0.172 0.828 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.821 -6.963 15.417 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.171 3.829 3 H 0.085 0.915 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.068 4.068 14 C 0.402 3.598 15 O -0.446 6.446 16 N -0.333 5.333 17 C 0.207 3.793 18 C -0.188 4.188 19 C -0.034 4.034 20 C -0.228 4.228 21 C 0.190 3.810 22 F -0.090 7.090 23 C -0.844 4.844 24 S 2.673 3.327 25 C -0.806 4.806 26 O -0.921 6.921 27 O -0.924 6.924 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.244 0.756 36 H 0.189 0.811 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.060 -6.004 15.468 18.446 hybrid contribution 0.870 -1.043 -0.992 1.682 sum 8.930 -7.048 14.475 18.410 Atomic orbital electron populations 1.22131 0.97959 0.99592 1.01134 1.19005 0.90938 0.94357 0.78591 0.91475 1.21251 1.32193 1.13159 0.90143 0.92261 1.24878 0.94889 0.94959 0.98934 1.69869 1.36065 1.22453 1.24002 0.86527 0.79168 0.79559 0.81928 1.20234 1.21141 1.20282 1.47686 1.49972 1.11757 1.23239 1.21668 1.02636 0.83125 0.99334 1.15877 0.79920 0.84860 0.79121 1.90820 1.62227 1.14964 1.76578 1.43483 1.45715 1.19361 1.24738 1.16802 0.85718 0.91170 0.85603 1.21930 0.95893 0.97201 1.03814 1.21239 0.94096 0.96324 0.91777 1.21139 1.03943 0.99737 0.97943 1.16646 0.93260 0.93117 0.77948 1.91649 1.94390 1.89343 1.33651 1.29908 1.24211 1.28270 1.02035 1.05451 0.75359 0.76499 0.75402 1.30321 1.15887 1.20849 1.13513 1.93623 1.86361 1.85572 1.26549 1.93616 1.37815 1.85064 1.75941 0.94951 0.96681 0.88549 0.92518 0.92892 0.92898 0.89793 0.75625 0.81086 0.83976 0.84123 0.84539 0.84438 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 2 C 0.27 6.67 2.64 -69.08 -0.18 6.49 16 3 H 0.07 1.90 6.90 -51.92 -0.36 1.54 16 4 C -0.53 -13.67 8.37 -34.44 -0.29 -13.95 16 5 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 N -0.59 -12.31 2.75 -181.01 -0.50 -12.81 16 13 C 0.08 1.23 9.49 59.84 0.57 1.80 16 14 C 0.70 14.28 8.10 -86.91 -0.70 13.58 16 15 O -0.57 -13.17 12.71 5.29 0.07 -13.11 16 16 N -0.69 -11.02 4.47 -14.23 -0.06 -11.09 16 17 C 0.31 4.63 6.39 -83.70 -0.54 4.09 16 18 C -0.17 -2.46 8.74 -39.39 -0.34 -2.81 16 19 C -0.02 -0.17 10.04 -39.62 -0.40 -0.57 16 20 C -0.21 -2.24 10.02 -39.48 -0.40 -2.64 16 21 C 0.21 2.65 7.21 -39.45 -0.28 2.36 16 22 F -0.11 -1.46 14.99 2.25 0.03 -1.42 16 23 C -0.75 -9.81 5.66 -39.33 -0.22 -10.04 16 24 S 2.50 28.12 5.25 -107.50 -0.56 27.55 16 25 C -0.66 -4.06 10.74 101.05 1.09 -2.98 16 26 O -0.92 -12.82 15.69 -57.54 -0.90 -13.73 16 27 O -0.93 -13.13 15.49 -57.54 -0.89 -14.02 16 28 H 0.03 0.69 6.66 -51.93 -0.35 0.35 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.70 6.29 -51.93 -0.33 0.38 16 34 H 0.08 1.37 6.43 -51.93 -0.33 1.03 16 35 H 0.40 5.39 3.60 -40.82 -0.15 5.25 16 36 H 0.17 2.91 5.62 -52.49 -0.30 2.61 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.14 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.13 0.67 7.63 -51.92 -0.40 0.27 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -34.16 349.03 -8.01 -42.16 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.59 Total: 5.72 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.46 Total: -6.17 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.07 Total: -47.52 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.73 Total: -40.85 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.03 Total: -1.42 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 28.12 SS G_CDS: -0.56 Total: 27.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.16 -8.01 -42.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603041919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.348 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds