Wall clock time and date at job start Wed Apr 1 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47016 * 2 1 4 4 C 1.50701 * 109.47290 * 239.99916 * 2 1 3 5 5 H 1.08000 * 119.99629 * 240.00338 * 4 2 1 6 6 C 1.37875 * 119.99939 * 59.99781 * 4 2 1 7 7 N 1.31517 * 119.99841 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47162 * 59.99896 * 8 6 4 10 10 H 1.48498 * 109.46983 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46947 * 300.00283 * 8 6 4 12 12 N 1.46504 * 109.47089 * 119.99670 * 2 1 3 13 13 C 1.46494 * 119.99874 * 59.99906 * 12 2 1 14 14 C 1.34780 * 119.99735 * 240.00130 * 12 2 1 15 15 O 1.21584 * 120.00321 * 359.97438 * 14 12 2 16 16 N 1.34779 * 119.99519 * 179.97438 * 14 12 2 17 17 C 1.39942 * 119.99783 * 174.34412 * 16 14 12 18 18 C 1.38896 * 120.05664 * 337.43917 * 17 16 14 19 19 C 1.38108 * 119.97831 * 179.74186 * 18 17 16 20 20 C 1.38266 * 120.09351 * 0.50874 * 19 18 17 21 21 C 1.38493 * 120.11456 * 359.76692 * 20 19 18 22 22 F 1.35101 * 119.98950 * 179.97438 * 21 20 19 23 23 C 1.38352 * 120.01584 * 359.97438 * 21 20 19 24 24 S 1.76200 * 120.04586 * 180.02562 * 23 21 20 25 25 C 1.81403 * 104.44771 * 259.51309 * 24 23 21 26 26 O 1.42102 * 104.27689 * 15.58198 * 24 23 21 27 27 O 1.42095 * 104.28063 * 143.44290 * 24 23 21 28 28 H 1.08998 * 109.47611 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47352 * 300.00230 * 1 2 3 30 30 H 1.09000 * 109.47463 * 59.99785 * 1 2 3 31 31 H 0.97004 * 119.99441 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46759 * 89.99970 * 13 12 2 33 33 H 1.09001 * 109.47126 * 209.99636 * 13 12 2 34 34 H 1.08997 * 109.47427 * 330.00314 * 13 12 2 35 35 H 0.97001 * 119.99975 * 354.35514 * 16 14 12 36 36 H 1.08000 * 120.01529 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.95214 * 180.23567 * 19 18 17 38 38 H 1.08001 * 119.94093 * 179.74573 * 20 19 18 39 39 H 1.08997 * 109.47198 * 60.00328 * 25 24 23 40 40 H 1.09005 * 109.46760 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47447 * 299.99705 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8269 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0872 1.1285 1.8907 16 7 3.2419 -0.6706 3.1841 17 6 4.1412 -0.0299 4.0439 18 6 4.9266 1.0156 3.5756 19 6 5.8097 1.6503 4.4269 20 6 5.9209 1.2396 5.7424 21 6 5.1439 0.1938 6.2119 22 9 5.2550 -0.2058 7.4977 23 6 4.2538 -0.4418 5.3646 24 16 3.2643 -1.7721 5.9613 25 6 4.1095 -3.2649 5.3714 26 8 3.3584 -1.6718 7.3756 27 8 2.0192 -1.6084 5.2964 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.7089 1.1613 -3.4844 32 1 2.4157 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6904 -2.3001 0.9848 35 1 2.9417 -1.5719 3.3803 36 1 4.8440 1.3347 2.5471 37 1 6.4174 2.4657 4.0633 38 1 6.6153 1.7350 6.4049 39 1 5.1201 -3.2951 5.7785 40 1 3.5596 -4.1471 5.6992 41 1 4.1566 -3.2495 4.2825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603041919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:06 Heat of formation + Delta-G solvation = -108.531392 kcal Electronic energy + Delta-G solvation = -29026.447314 eV Core-core repulsion = 24755.949106 eV Total energy + Delta-G solvation = -4270.498208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.104 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.13955 -42.04147 -39.81869 -38.31394 -37.35657 -37.10889 -36.06959 -34.71547 -32.21133 -31.56506 -30.42390 -30.13096 -27.77109 -27.26649 -24.79031 -24.64893 -22.81006 -21.05131 -20.43123 -19.59159 -18.95953 -18.56027 -18.27233 -17.64449 -17.41338 -17.21318 -16.73851 -16.60538 -16.54066 -16.33968 -16.01394 -15.77903 -15.02096 -14.66176 -14.46054 -14.28391 -14.11851 -14.04848 -13.84259 -13.63698 -13.47567 -13.33036 -13.25921 -13.08572 -13.03870 -12.86690 -12.71849 -12.60045 -12.17866 -12.15460 -12.10176 -11.87624 -11.62456 -11.23182 -11.00621 -10.50441 -10.41443 -9.59728 -9.18509 -8.12328 -6.28789 -1.04777 -0.42229 0.02656 1.36494 1.45792 1.47591 1.54933 1.70659 1.92485 2.35845 2.44422 2.77987 2.82810 2.97967 3.07666 3.16399 3.68598 3.79212 4.01063 4.04670 4.20353 4.22554 4.29988 4.51783 4.61410 4.70951 4.80416 4.86534 4.88572 4.90766 4.97601 5.04742 5.17905 5.27101 5.35705 5.49203 5.65363 5.75312 5.88341 6.07355 6.16415 6.76396 6.86364 7.31259 7.46595 8.92080 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.003321 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.732984 B = 8428.361931 C = 9121.765787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.277 3.723 3 H 0.017 0.983 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.604 5.604 13 C 0.069 3.931 14 C 0.695 3.305 15 O -0.608 6.608 16 N -0.674 5.674 17 C 0.283 3.717 18 C -0.189 4.189 19 C -0.006 4.006 20 C -0.191 4.191 21 C 0.200 3.800 22 F -0.114 7.114 23 C -0.750 4.750 24 S 2.487 3.513 25 C -0.626 4.626 26 O -0.957 6.957 27 O -0.966 6.966 28 H 0.050 0.950 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.416 0.584 36 H 0.143 0.857 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.588 -9.402 16.374 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.175 3.825 3 H 0.035 0.965 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.336 5.336 13 C -0.073 4.073 14 C 0.397 3.603 15 O -0.488 6.488 16 N -0.323 5.323 17 C 0.182 3.818 18 C -0.211 4.211 19 C -0.025 4.025 20 C -0.211 4.211 21 C 0.178 3.822 22 F -0.092 7.092 23 C -0.839 4.839 24 S 2.668 3.332 25 C -0.781 4.781 26 O -0.954 6.954 27 O -0.962 6.962 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.258 0.742 36 H 0.160 0.840 37 H 0.192 0.808 38 H 0.194 0.806 39 H 0.179 0.821 40 H 0.188 0.812 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.831 -8.435 16.494 20.973 hybrid contribution 0.417 -0.291 -1.159 1.266 sum 10.249 -8.726 15.335 20.405 Atomic orbital electron populations 1.21942 0.97243 1.00339 1.00018 1.18580 0.91407 0.92296 0.80223 0.96460 1.21511 1.32104 1.13225 0.90740 0.91699 1.25709 0.95031 0.95595 1.01933 1.70019 1.37188 1.23840 1.24522 0.85493 0.78407 0.78925 0.78062 1.18746 1.21217 1.20169 1.47540 1.50295 1.13417 1.22392 1.21945 1.03083 0.80665 1.01595 1.16020 0.79755 0.84543 0.79962 1.90797 1.63524 1.16817 1.77702 1.43092 1.45876 1.19725 1.23616 1.16903 0.86425 0.92183 0.86286 1.21852 0.97648 0.98294 1.03273 1.21546 0.93114 0.96314 0.91519 1.21536 1.03213 0.98440 0.97892 1.16889 0.93713 0.93699 0.77851 1.91648 1.94417 1.89442 1.33728 1.30070 1.23790 1.29063 1.00974 1.05620 0.75142 0.77808 0.74629 1.30128 1.16539 1.16796 1.14601 1.93582 1.86801 1.86570 1.28477 1.93565 1.40371 1.86181 1.76123 0.93131 0.96445 0.90938 0.92631 0.91046 0.89929 0.89900 0.74209 0.83982 0.80844 0.80638 0.82054 0.81224 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.57 8.95 71.98 0.64 -5.92 16 2 C 0.28 14.11 2.64 44.24 0.12 14.23 16 3 H 0.02 1.05 6.90 -2.38 -0.02 1.04 16 4 C -0.54 -28.07 8.37 25.60 0.21 -27.86 16 5 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -51.56 11.32 21.45 0.24 -51.32 16 8 Si 0.97 41.53 29.54 68.60 2.03 43.55 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.60 -25.41 2.75 -844.84 -2.33 -27.73 16 13 C 0.07 2.15 9.49 127.77 1.21 3.36 16 14 C 0.70 29.26 8.10 179.05 1.45 30.71 16 15 O -0.61 -29.96 12.71 -3.98 -0.05 -30.01 16 16 N -0.67 -21.66 4.47 -317.20 -1.42 -23.08 16 17 C 0.28 8.43 6.39 38.14 0.24 8.68 16 18 C -0.19 -5.67 8.74 22.40 0.20 -5.47 16 19 C -0.01 -0.13 10.04 22.25 0.22 0.09 16 20 C -0.19 -3.64 10.02 22.34 0.22 -3.42 16 21 C 0.20 4.65 7.21 22.36 0.16 4.81 16 22 F -0.11 -2.76 14.99 44.97 0.67 -2.09 16 23 C -0.75 -18.78 5.66 22.43 0.13 -18.66 16 24 S 2.49 52.33 5.25 -56.49 -0.30 52.03 16 25 C -0.63 -5.09 10.74 113.37 1.22 -3.87 16 26 O -0.96 -25.63 15.69 -127.65 -2.00 -27.63 16 27 O -0.97 -26.72 15.49 -127.65 -1.98 -28.70 16 28 H 0.05 2.18 6.66 -2.39 -0.02 2.16 16 29 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 31 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.08 2.03 6.29 -2.39 -0.01 2.01 16 34 H 0.08 2.57 6.43 -2.39 -0.02 2.56 16 35 H 0.42 10.62 3.60 -92.71 -0.33 10.29 16 36 H 0.14 5.16 5.62 -2.91 -0.02 5.14 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.17 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.15 0.83 7.63 -2.39 -0.02 0.81 16 Total: -1.00 -78.80 349.03 2.11 -76.69 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.76 Total: 20.24 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 6.48 Total: -1.96 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.50 Total: -102.13 kcal Atomic # 8 Polarization: -82.31 SS G_CDS: -4.03 Total: -86.34 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.67 Total: -2.09 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 52.33 SS G_CDS: -0.30 Total: 52.03 kcal Total: -78.80 2.11 -76.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603041919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.840 kcal (2) G-P(sol) polarization free energy of solvation -78.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds