Wall clock time and date at job start Wed Apr 1 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37935 * 119.51226 * 2 1 4 4 C 1.39889 * 119.19524 * 180.02562 * 3 2 1 5 5 C 1.48467 * 120.85877 * 180.02562 * 4 3 2 6 6 N 1.34043 * 126.67181 * 359.68330 * 5 4 3 7 7 N 1.28987 * 107.26669 * 179.87420 * 6 5 4 8 8 N 1.28734 * 108.94001 * 0.39791 * 7 6 5 9 9 H 0.97007 * 125.33509 * 179.72885 * 8 7 6 10 10 N 1.28868 * 109.31917 * 359.74855 * 8 7 6 11 11 C 1.39447 * 118.28060 * 359.75082 * 4 3 2 12 12 C 1.38934 * 118.95249 * 0.49555 * 11 4 3 13 13 S 1.76204 * 119.64669 * 179.77425 * 12 11 4 14 14 C 1.76202 * 100.00033 * 179.72297 * 13 12 11 15 15 N 1.32323 * 126.25259 * 0.02562 * 14 13 12 16 16 N 1.28515 * 110.20520 * 179.97438 * 15 14 13 17 17 C 1.33112 * 109.74315 * 0.02562 * 16 15 14 18 18 C 1.39783 * 126.56839 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99873 * 186.17174 * 18 17 16 20 20 C 1.40060 * 119.99965 * 6.17473 * 18 17 16 21 21 N 1.30824 * 120.00209 * 183.80421 * 20 18 17 22 22 Si 1.86807 * 119.99994 * 3.53172 * 20 18 17 23 23 H 1.48501 * 109.46985 * 180.27530 * 22 20 18 24 24 H 1.48497 * 109.46856 * 300.27555 * 22 20 18 25 25 H 1.48503 * 109.46821 * 60.27556 * 22 20 18 26 26 N 1.36705 * 126.25751 * 180.27167 * 14 13 12 27 27 C 1.46493 * 127.15079 * 0.02562 * 26 14 13 28 28 N 1.31926 * 119.51553 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46778 * 269.97543 * 1 2 3 30 30 H 1.08999 * 109.46992 * 29.97671 * 1 2 3 31 31 H 1.08998 * 109.46759 * 149.97852 * 1 2 3 32 32 H 1.08008 * 120.39962 * 0.02562 * 3 2 1 33 33 H 1.07991 * 120.52367 * 180.23772 * 11 4 3 34 34 H 0.97000 * 119.99775 * 354.53708 * 21 20 18 35 35 H 1.08993 * 109.47613 * 270.15595 * 27 26 14 36 36 H 1.09000 * 109.47091 * 30.15885 * 27 26 14 37 37 H 1.09001 * 109.46900 * 150.15273 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2004 0.0000 4 6 3.5854 1.1926 -0.0005 5 6 4.3539 2.4629 0.0000 6 7 3.8485 3.7044 -0.0049 7 7 4.8449 4.5234 0.0003 8 7 5.9409 3.8481 -0.0002 9 1 6.8337 4.2276 -0.0007 10 7 5.6659 2.5891 -0.0005 11 6 4.2393 -0.0390 0.0043 12 6 3.4809 -1.2031 -0.0011 13 16 4.2883 -2.7693 -0.0012 14 6 2.8861 -3.8364 -0.0005 15 7 1.6172 -3.4611 -0.0006 16 7 0.8495 -4.4917 -0.0005 17 6 1.5856 -5.6008 0.0001 18 6 1.1108 -6.9155 0.0009 19 1 1.8020 -7.7391 0.1019 20 6 -0.2612 -7.1646 -0.1295 21 7 -0.7137 -8.3898 -0.0542 22 14 -1.4461 -5.7466 -0.4032 23 1 -2.8319 -6.2714 -0.5011 24 1 -1.3551 -4.7986 0.7361 25 1 -1.0932 -5.0428 -1.6624 26 7 2.9103 -5.2032 0.0049 27 6 4.0933 -6.0671 0.0117 28 7 2.1570 -1.1481 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6450 2.1349 0.0004 33 1 5.3181 -0.0872 0.0079 34 1 -0.0934 -9.1326 0.0123 35 1 4.3915 -6.2831 -1.0141 36 1 4.9092 -5.5617 0.5285 37 1 3.8596 -6.9992 0.5261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605534607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:55 Heat of formation + Delta-G solvation = 235.066964 kcal Electronic energy + Delta-G solvation = -26088.648885 eV Core-core repulsion = 22224.864604 eV Total energy + Delta-G solvation = -3863.784281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.086 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.77881 -40.85983 -40.02772 -34.95650 -34.25824 -33.90475 -33.56055 -32.63691 -31.64048 -29.91628 -27.65378 -26.73070 -25.39234 -25.17093 -24.90726 -23.11600 -21.55337 -21.25618 -20.11917 -19.54050 -18.17681 -17.62863 -17.45932 -16.54587 -16.15902 -15.58884 -15.06658 -14.97643 -14.48633 -14.42904 -14.01985 -13.63550 -13.30109 -13.19348 -12.78348 -12.63791 -12.61646 -12.51004 -12.13446 -11.94543 -11.87203 -11.78792 -11.54036 -11.43161 -11.13741 -10.91409 -10.68565 -9.90102 -9.86019 -9.61489 -9.34827 -9.30950 -8.85159 -8.79860 -8.51662 -8.34469 -7.41745 -7.09043 -4.83153 0.47598 0.92006 1.03418 1.62475 1.90948 2.20012 2.28526 2.94925 3.33061 3.59663 3.67086 3.79435 3.86670 3.89886 4.07417 4.24365 4.44047 4.56548 4.84122 4.94960 5.04099 5.11624 5.13790 5.25979 5.34356 5.57476 5.65722 5.70551 5.88076 5.89248 5.97147 6.00028 6.08920 6.30386 6.47132 6.61896 6.74492 7.14730 7.41040 7.60810 7.81382 8.06027 8.08597 8.37480 8.57633 9.98059 10.22563 Molecular weight = 344.09amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.002900 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.991470 B = 9654.163467 C =10937.475136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.143 4.143 4 C 0.034 3.966 5 C 0.225 3.775 6 N -0.261 5.261 7 N -0.049 5.049 8 N -0.227 5.227 9 H 0.476 0.524 10 N -0.286 5.286 11 C -0.128 4.128 12 C 0.112 3.888 13 S 0.131 5.869 14 C 0.022 3.978 15 N -0.188 5.188 16 N -0.420 5.420 17 C 0.346 3.654 18 C -0.490 4.490 19 H 0.082 0.918 20 C 0.064 3.936 21 N -0.808 5.808 22 Si 1.113 2.887 23 H -0.313 1.313 24 H -0.259 1.259 25 H -0.280 1.280 26 N -0.516 5.516 27 C 0.101 3.899 28 N -0.401 5.401 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.283 0.717 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.412 18.223 0.012 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.007 3.993 3 C -0.168 4.168 4 C 0.022 3.978 5 C -0.055 4.055 6 N -0.135 5.135 7 N -0.045 5.045 8 N -0.073 5.073 9 H 0.331 0.669 10 N -0.138 5.138 11 C -0.157 4.157 12 C -0.138 4.138 13 S 0.372 5.628 14 C -0.349 4.349 15 N -0.032 5.032 16 N -0.272 5.272 17 C 0.104 3.896 18 C -0.531 4.531 19 H 0.100 0.900 20 C -0.158 4.158 21 N -0.432 5.432 22 Si 0.942 3.058 23 H -0.244 1.244 24 H -0.184 1.184 25 H -0.206 1.206 26 N -0.218 5.218 27 C -0.044 4.044 28 N -0.113 5.113 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.507 18.849 -0.111 22.084 hybrid contribution 2.922 -0.747 0.201 3.022 sum 14.429 18.102 0.090 23.149 Atomic orbital electron populations 1.20733 0.88005 1.03848 1.03461 1.21451 0.97695 0.87069 0.93061 1.21967 0.92461 1.00305 1.02103 1.17176 0.92023 0.86685 1.01930 1.23490 0.86455 0.93884 1.01708 1.76107 1.21328 0.98698 1.17336 1.78930 0.88623 1.22162 1.14737 1.47746 1.11741 1.01846 1.45974 0.66946 1.74961 1.17131 1.00280 1.21468 1.21479 1.01010 0.90179 1.03079 1.22975 0.93568 0.96976 1.00326 1.83214 1.01466 0.89410 1.88664 1.25340 0.98981 0.85085 1.25533 1.74818 0.96018 1.21545 1.10787 1.74140 1.23331 0.94353 1.35338 1.21735 0.78121 0.96290 0.93461 1.19397 0.95974 0.88784 1.48898 0.90019 1.27380 0.97825 1.01974 0.88651 1.70687 1.39912 1.00063 1.32523 0.82692 0.70985 0.71543 0.80629 1.24375 1.18448 1.20600 1.45851 1.07128 1.03874 1.64963 1.21530 0.86105 0.94845 1.01923 1.68646 1.06125 1.27531 1.09027 0.90189 0.90923 0.89199 0.83693 0.83843 0.90606 0.92203 0.91475 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.16 36.01 0.37 -1.02 16 2 C 0.15 2.31 6.77 -82.66 -0.56 1.75 16 3 C -0.14 -1.86 9.42 -39.07 -0.37 -2.23 16 4 C 0.03 0.45 5.91 -104.61 -0.62 -0.17 16 5 C 0.22 2.68 7.97 -156.31 -1.25 1.44 16 6 N -0.26 -3.12 12.33 32.15 0.40 -2.73 16 7 N -0.05 -0.48 13.47 60.35 0.81 0.33 16 8 N -0.23 -1.59 7.90 60.35 0.48 -1.12 16 9 H 0.48 0.91 8.96 -340.36 -3.05 -2.14 16 10 N -0.29 -2.86 12.17 32.17 0.39 -2.47 16 11 C -0.13 -1.75 9.52 -38.87 -0.37 -2.12 16 12 C 0.11 1.89 6.95 -17.00 -0.12 1.77 16 13 S 0.13 2.22 21.99 -107.50 -2.36 -0.15 16 14 C 0.02 0.51 8.04 -87.30 -0.70 -0.19 16 15 N -0.19 -4.82 9.33 30.89 0.29 -4.53 16 16 N -0.42 -11.57 7.51 31.25 0.23 -11.34 16 17 C 0.35 9.18 7.27 -154.85 -1.13 8.05 16 18 C -0.49 -13.07 9.50 -38.32 -0.36 -13.44 16 19 H 0.08 2.11 7.46 -52.49 -0.39 1.72 16 20 C 0.06 1.73 5.52 -17.30 -0.10 1.64 16 21 N -0.81 -21.67 13.65 55.55 0.76 -20.91 16 22 Si 1.11 27.98 25.88 -169.99 -4.40 23.58 16 23 H -0.31 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.26 -6.69 6.77 56.52 0.38 -6.30 16 25 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 26 N -0.52 -11.83 3.26 -123.20 -0.40 -12.23 16 27 C 0.10 1.74 10.89 59.84 0.65 2.39 16 28 N -0.40 -7.55 7.03 -8.42 -0.06 -7.61 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.15 1.58 7.97 -52.48 -0.42 1.16 16 33 H 0.14 1.65 7.96 -52.49 -0.42 1.23 16 34 H 0.28 7.20 8.73 -40.82 -0.36 6.84 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 37 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -34.49 342.34 -9.19 -43.68 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -5.93 Total: -7.53 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -4.55 Total: -2.14 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 2.90 Total: -62.59 kcal Atomic # 14 Polarization: 27.98 SS G_CDS: -4.40 Total: 23.58 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.36 Total: -0.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.49 -9.19 -43.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605534607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.742 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 244.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 235.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds