Wall clock time and date at job start Wed Apr 1 2020 03:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47224 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46815 * 299.99827 * 3 2 1 6 6 H 1.48494 * 109.47272 * 59.99695 * 3 2 1 7 7 C 1.38755 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99695 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.34310 * 116.99902 * 179.97438 * 9 7 2 11 11 O 1.21211 * 120.00158 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99859 * 180.02562 * 10 9 7 13 13 C 1.53123 * 109.52365 * 180.02562 * 12 10 9 14 14 C 1.53036 * 109.27788 * 182.44137 * 13 12 10 15 15 N 1.46846 * 109.52384 * 59.18000 * 14 13 12 16 16 C 1.39004 * 110.99970 * 174.16163 * 15 14 13 17 17 C 1.39133 * 119.70600 * 180.02562 * 16 15 14 18 18 C 1.38300 * 119.09656 * 179.97438 * 17 16 15 19 19 C 1.38882 * 118.50463 * 0.02562 * 18 17 16 20 20 C 1.50704 * 120.33281 * 180.02562 * 19 18 17 21 21 F 1.39903 * 109.46749 * 90.00071 * 20 19 18 22 22 F 1.39893 * 109.47023 * 209.99618 * 20 19 18 23 23 F 1.39901 * 109.47111 * 329.99896 * 20 19 18 24 24 C 1.38015 * 119.33171 * 359.97438 * 19 18 17 25 25 N 1.31979 * 120.85536 * 359.72230 * 24 19 18 26 26 C 1.46842 * 111.19700 * 298.25435 * 15 14 13 27 27 C 1.53041 * 109.52407 * 61.74724 * 26 15 14 28 28 H 0.96999 * 120.00224 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.57489 * 300.15923 * 12 10 9 30 30 H 1.09000 * 109.50367 * 62.49682 * 13 12 10 31 31 H 1.09006 * 109.50264 * 302.38021 * 13 12 10 32 32 H 1.08999 * 109.46075 * 179.19317 * 14 13 12 33 33 H 1.08998 * 109.46309 * 299.16289 * 14 13 12 34 34 H 1.07998 * 120.45237 * 359.97438 * 17 16 15 35 35 H 1.08001 * 120.74886 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.57679 * 180.02562 * 24 19 18 37 37 H 1.09006 * 109.46447 * 181.75636 * 26 15 14 38 38 H 1.08994 * 109.46873 * 301.72670 * 26 15 14 39 39 H 1.08997 * 109.50282 * 60.75542 * 27 26 15 40 40 H 1.08999 * 109.50511 * 180.87834 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3465 0.0006 5 1 1.8896 2.3964 -1.2126 6 1 1.8896 2.3965 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8393 0.0000 13 6 2.4345 -5.9504 0.0007 14 6 1.7349 -7.3101 -0.0614 15 7 0.9180 -7.3864 -1.2792 16 6 0.3722 -8.6554 -1.4342 17 6 -0.4361 -8.9288 -2.5332 18 6 -0.9720 -10.1958 -2.6752 19 6 -0.6811 -11.1506 -1.7095 20 6 -1.2428 -12.5444 -1.8238 21 9 -0.3541 -13.3474 -2.5468 22 9 -1.4214 -13.0815 -0.5445 23 9 -2.4742 -12.4981 -2.4863 24 6 0.1284 -10.8105 -0.6448 25 7 0.6311 -9.5948 -0.5379 26 6 -0.1310 -6.3588 -1.2802 27 6 0.5129 -4.9707 -1.2546 28 1 -0.4850 0.8400 -0.0004 29 1 0.7551 -4.9306 0.8877 30 1 3.0285 -5.8880 0.9125 31 1 3.0849 -5.8358 -0.8665 32 1 2.4827 -8.1029 -0.0755 33 1 1.0953 -7.4297 0.8131 34 1 -0.6421 -8.1621 -3.2654 35 1 -1.6026 -10.4373 -3.5181 36 1 0.3575 -11.5500 0.1083 37 1 -0.7385 -6.4607 -2.1796 38 1 -0.7619 -6.4829 -0.4001 39 1 1.1330 -4.8407 -2.1415 40 1 -0.2661 -4.2084 -1.2395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022715532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:57 Heat of formation + Delta-G solvation = -205.473011 kcal Electronic energy + Delta-G solvation = -29353.223049 eV Core-core repulsion = 24524.680750 eV Total energy + Delta-G solvation = -4828.542298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.113 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.15718 -48.67673 -48.62560 -42.04674 -41.15278 -39.44445 -37.30166 -35.25638 -34.27895 -33.86683 -32.12841 -31.66967 -28.26055 -27.09524 -25.87648 -25.29512 -23.59892 -23.24503 -22.15357 -20.74321 -19.86620 -19.57833 -19.48664 -19.41257 -18.70292 -18.39679 -17.48183 -16.80043 -16.72521 -16.23484 -16.09812 -15.78912 -15.54593 -15.47704 -15.41483 -15.08001 -15.06450 -14.85148 -14.79475 -14.77934 -14.46948 -14.34553 -14.23291 -14.11467 -13.64541 -13.28273 -13.10014 -12.87203 -12.59645 -12.38454 -12.30928 -12.19951 -12.01050 -11.86870 -11.58305 -11.29480 -11.01022 -10.87154 -10.69654 -10.68706 -9.33846 -8.54129 -6.33166 -0.32802 0.12058 1.29127 1.34376 1.51960 1.63041 1.63804 2.10953 2.18573 2.52222 2.71743 2.75301 2.96902 2.99635 3.27001 3.41637 3.59753 3.70795 3.73333 3.86372 3.96742 4.03102 4.13661 4.26458 4.28968 4.49998 4.53634 4.60556 4.62271 4.75542 4.80335 4.85464 4.87761 5.01138 5.15081 5.20813 5.21676 5.30420 5.57329 5.83832 5.97783 6.67548 6.74628 6.91818 7.77724 8.66433 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.001929 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.931938 B =14515.478518 C =14927.315351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.002 4.002 3 Si 1.014 2.986 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.078 0.922 9 O -0.240 6.240 10 C 0.400 3.600 11 O -0.584 6.584 12 C -0.067 4.067 13 C -0.092 4.092 14 C 0.081 3.919 15 N -0.483 5.483 16 C 0.333 3.667 17 C -0.188 4.188 18 C 0.002 3.998 19 C -0.280 4.280 20 C 0.525 3.475 21 F -0.181 7.181 22 F -0.178 7.178 23 F -0.177 7.177 24 C 0.179 3.821 25 N -0.538 5.538 26 C 0.072 3.928 27 C -0.101 4.101 28 H 0.278 0.722 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.118 0.882 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 -24.075 -5.130 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.202 4.202 3 Si 0.833 3.167 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.095 0.905 9 O -0.148 6.148 10 C 0.248 3.752 11 O -0.482 6.482 12 C -0.086 4.086 13 C -0.130 4.130 14 C -0.045 4.045 15 N -0.199 5.199 16 C 0.102 3.898 17 C -0.211 4.211 18 C -0.023 4.023 19 C -0.285 4.285 20 C 0.470 3.530 21 F -0.162 7.162 22 F -0.160 7.160 23 F -0.159 7.159 24 C 0.020 3.980 25 N -0.252 5.252 26 C -0.053 4.053 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.186 0.814 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.572 -23.516 -4.813 24.641 hybrid contribution -0.271 0.339 0.017 0.434 sum -5.843 -23.177 -4.796 24.379 Atomic orbital electron populations 1.70060 1.07459 1.29245 1.46961 1.26454 0.96873 1.02135 0.94777 0.84621 0.77749 0.75071 0.79269 1.19136 1.18353 1.18488 1.21401 0.92014 0.81372 1.54819 0.90453 1.83894 1.40177 1.14063 1.76630 1.24394 0.86596 0.88231 0.75997 1.90519 1.17370 1.88656 1.51667 1.21025 0.98201 0.87225 1.02192 1.21437 0.96529 0.91757 1.03283 1.21914 0.96809 0.96469 0.89328 1.58978 1.21550 1.01132 1.38238 1.20304 0.88737 0.90341 0.90445 1.21807 1.00913 0.98943 0.99412 1.21520 0.93660 0.90686 0.96475 1.20891 1.09900 0.94370 1.03334 1.17938 0.75525 0.85914 0.73582 1.93231 1.68552 1.76118 1.78302 1.93194 1.95295 1.87939 1.39533 1.93194 1.44794 1.96731 1.81157 1.22657 0.88284 0.92549 0.94472 1.67820 1.26454 1.02527 1.28429 1.22319 0.90923 0.87731 1.04309 1.21520 0.99193 0.97221 0.95953 0.91214 0.87343 0.90620 0.91836 0.88776 0.92149 0.81368 0.80959 0.80118 0.86436 0.91933 0.91337 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.17 13.67 21.62 0.30 -51.88 16 2 C 0.00 -0.11 5.49 84.88 0.47 0.36 16 3 Si 1.01 43.16 29.55 68.60 2.03 45.19 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.42 -25.35 9.65 67.94 0.66 -24.69 16 8 H 0.08 4.80 6.86 -2.91 -0.02 4.78 16 9 O -0.24 -13.81 9.68 14.89 0.14 -13.66 16 10 C 0.40 19.74 7.20 71.24 0.51 20.26 16 11 O -0.58 -32.02 15.21 20.77 0.32 -31.70 16 12 C -0.07 -2.33 2.70 -11.46 -0.03 -2.36 16 13 C -0.09 -2.79 4.68 30.65 0.14 -2.64 16 14 C 0.08 1.94 4.65 86.33 0.40 2.35 16 15 N -0.48 -10.73 4.68 -702.00 -3.28 -14.01 16 16 C 0.33 6.63 6.40 133.06 0.85 7.48 16 17 C -0.19 -2.77 9.18 22.50 0.21 -2.56 16 18 C 0.00 0.03 9.51 22.44 0.21 0.24 16 19 C -0.28 -4.09 5.46 -19.76 -0.11 -4.20 16 20 C 0.53 7.54 3.38 71.24 0.24 7.78 16 21 F -0.18 -2.87 17.30 44.97 0.78 -2.09 16 22 F -0.18 -2.69 16.48 44.97 0.74 -1.95 16 23 F -0.18 -2.57 16.53 44.97 0.74 -1.83 16 24 C 0.18 2.93 10.55 84.62 0.89 3.83 16 25 N -0.54 -11.00 8.68 -193.27 -1.68 -12.68 16 26 C 0.07 1.49 5.25 86.33 0.45 1.94 16 27 C -0.10 -2.94 5.31 30.65 0.16 -2.78 16 28 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.13 8.04 -2.38 -0.02 2.11 16 32 H 0.09 2.22 7.70 -2.39 -0.02 2.20 16 33 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 34 H 0.17 1.79 7.14 -2.91 -0.02 1.77 16 35 H 0.17 1.26 7.68 -2.91 -0.02 1.23 16 36 H 0.18 2.21 7.60 -2.91 -0.02 2.18 16 37 H 0.12 1.79 6.67 -2.38 -0.02 1.78 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -72.78 351.36 6.24 -66.54 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.10 Total: 13.09 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.06 Total: 4.99 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -4.67 Total: -78.57 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: 0.46 Total: -45.37 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 2.26 Total: -5.87 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.78 6.24 -66.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022715532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.934 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds