Wall clock time and date at job start Wed Apr 1 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00070 * 2 1 4 4 H 1.48499 * 109.46751 * 239.99871 * 3 2 1 5 5 H 1.48500 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47537 * 119.99811 * 3 2 1 7 7 C 1.37877 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00208 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47501 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.98102 * 124.99633 * 10 9 7 12 12 C 1.35246 * 107.85294 * 179.97438 * 11 10 9 13 13 C 1.40368 * 107.87135 * 0.02562 * 12 11 10 14 14 N 1.40399 * 125.96496 * 179.97438 * 13 12 11 15 15 C 1.33786 * 124.18334 * 5.02338 * 14 13 12 16 16 O 1.21545 * 123.76983 * 359.96268 * 15 14 13 17 17 N 1.34524 * 112.46391 * 179.97438 * 15 14 13 18 18 C 1.47316 * 106.61733 * 359.97438 * 17 15 14 19 19 H 1.08997 * 110.59982 * 241.47664 * 18 17 15 20 20 C 1.50697 * 110.59873 * 118.52756 * 18 17 15 21 21 C 1.38223 * 120.01289 * 341.18030 * 20 18 17 22 22 C 1.38227 * 120.02135 * 179.71950 * 21 20 18 23 23 C 1.38269 * 120.05121 * 0.55685 * 22 21 20 24 24 C 1.38167 * 120.02647 * 359.72073 * 23 22 21 25 25 C 1.38443 * 120.01135 * 161.45575 * 20 18 17 26 26 F 1.35095 * 120.02640 * 0.02562 * 25 20 18 27 27 C 1.34778 * 124.17600 * 184.98334 * 14 13 12 28 28 O 1.21244 * 127.15470 * 0.07716 * 27 14 13 29 29 N 1.31197 * 108.06382 * 0.23991 * 13 12 11 30 30 H 0.97000 * 120.00424 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47172 * 59.99790 * 9 7 2 32 32 H 1.09000 * 109.47009 * 299.99834 * 9 7 2 33 33 H 1.08003 * 126.07889 * 0.02562 * 11 10 9 34 34 H 1.08003 * 126.05970 * 179.97438 * 12 11 10 35 35 H 0.97004 * 126.69418 * 179.97438 * 17 15 14 36 36 H 1.07993 * 119.98671 * 0.02562 * 21 20 18 37 37 H 1.08004 * 119.97115 * 180.27503 * 22 21 20 38 38 H 1.07997 * 119.98415 * 179.74274 * 23 22 21 39 39 H 1.08008 * 120.01071 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2415 -4.6220 0.8969 12 6 3.2601 -5.4426 0.5530 13 6 3.8689 -4.9151 -0.5965 14 7 4.9672 -5.4671 -1.2750 15 6 5.5298 -6.6406 -0.9649 16 8 5.1475 -7.3547 -0.0587 17 7 6.5661 -6.9420 -1.7680 18 6 6.6975 -5.8275 -2.7224 19 1 6.5520 -6.1783 -3.7441 20 6 8.0402 -5.1594 -2.5757 21 6 8.7790 -5.3380 -1.4212 22 6 10.0132 -4.7300 -1.2889 23 6 10.5052 -3.9332 -2.3062 24 6 9.7660 -3.7486 -3.4588 25 6 8.5319 -4.3618 -3.5950 26 9 7.8080 -4.1816 -4.7213 27 6 5.5845 -4.8805 -2.3196 28 8 5.3075 -3.8164 -2.8305 29 7 3.2361 -3.8131 -0.9227 30 1 -0.4851 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 1.5765 -4.7519 1.7380 34 1 3.5535 -6.3435 1.0715 35 1 7.1190 -7.7379 -1.7268 36 1 8.3938 -5.9569 -0.6244 37 1 10.5917 -4.8737 -0.3882 38 1 11.4679 -3.4553 -2.1999 39 1 10.1507 -3.1265 -4.2535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586871663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:54 Heat of formation + Delta-G solvation = 40.541965 kcal Electronic energy + Delta-G solvation = -29363.809010 eV Core-core repulsion = 24996.623908 eV Total energy + Delta-G solvation = -4367.185102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.107 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.17231 -42.74429 -40.37809 -39.29931 -38.55139 -36.28159 -35.13886 -33.43551 -31.82418 -31.05150 -30.93437 -29.52209 -27.58961 -26.81936 -24.07519 -23.57251 -22.99563 -22.42990 -21.57811 -20.09584 -19.42136 -18.22903 -17.95714 -17.24459 -16.88932 -16.61935 -16.53704 -16.34878 -15.91774 -15.63375 -15.28511 -15.20651 -14.65560 -14.38545 -14.30435 -14.14012 -14.03256 -13.72759 -13.39246 -12.98226 -12.69354 -12.60852 -12.33594 -12.16405 -11.84315 -11.55517 -11.13144 -10.98200 -10.82237 -10.67206 -10.46852 -10.24845 -9.92733 -9.86263 -9.58099 -9.36253 -9.04505 -8.62655 -8.40083 -7.74225 -6.23931 -4.28655 0.61240 0.80247 1.57612 1.90500 2.41215 2.78055 2.86868 3.11967 3.28195 3.30997 3.36664 3.56812 3.62759 3.83242 3.89923 4.00139 4.34007 4.35399 4.46235 4.68627 4.85754 4.95659 5.00673 5.12120 5.29407 5.37162 5.54669 5.62636 5.67687 5.83937 5.92871 5.98048 6.24860 6.36879 6.44126 6.55498 6.74671 6.93635 7.00290 7.21787 7.44834 7.68749 7.84948 7.92728 8.02277 8.45100 8.78944 9.37161 10.85163 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.003529 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.115438 B = 7932.278591 C = 9565.545975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.313 5.313 11 C 0.057 3.943 12 C -0.277 4.277 13 C 0.245 3.755 14 N -0.486 5.486 15 C 0.714 3.286 16 O -0.523 6.523 17 N -0.719 5.719 18 C 0.145 3.855 19 H 0.140 0.860 20 C -0.140 4.140 21 C -0.070 4.070 22 C -0.130 4.130 23 C -0.080 4.080 24 C -0.154 4.154 25 C 0.129 3.871 26 F -0.127 7.127 27 C 0.518 3.482 28 O -0.412 6.412 29 N -0.259 5.259 30 H 0.268 0.732 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.175 0.825 34 H 0.156 0.844 35 H 0.443 0.557 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.981 -14.251 -4.110 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.095 5.095 11 C -0.092 4.092 12 C -0.308 4.308 13 C -0.006 4.006 14 N -0.228 5.228 15 C 0.414 3.586 16 O -0.394 6.394 17 N -0.385 5.385 18 C 0.035 3.965 19 H 0.158 0.842 20 C -0.142 4.142 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.098 4.098 24 C -0.172 4.172 25 C 0.109 3.891 26 F -0.105 7.105 27 C 0.302 3.698 28 O -0.274 6.274 29 N -0.088 5.088 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.192 0.808 34 H 0.174 0.826 35 H 0.289 0.711 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 19.151 -12.749 -4.761 23.494 hybrid contribution 0.548 -0.005 0.314 0.631 sum 19.698 -12.754 -4.447 23.884 Atomic orbital electron populations 1.69900 1.06028 1.27798 1.49643 1.24913 0.94972 0.99519 0.94451 0.86388 0.79423 0.81718 0.79040 1.19812 1.20980 1.20018 1.21202 0.94009 0.89301 1.52328 0.91303 1.19839 0.85457 0.81127 0.99549 1.49366 1.22578 1.19697 1.17909 1.22547 0.99997 0.89879 0.96804 1.21163 1.02405 1.06353 1.00917 1.18712 0.91076 0.95728 0.95054 1.42775 1.28618 1.20305 1.31123 1.15497 0.80330 0.80526 0.82271 1.90992 1.65660 1.52071 1.30666 1.45375 1.34841 1.23636 1.34655 1.20690 0.92106 0.86588 0.97135 0.84233 1.19515 0.96055 1.02596 0.96061 1.20934 0.93985 0.98345 0.95590 1.21225 0.96005 0.97909 0.99638 1.21137 0.99690 0.96633 0.92324 1.21192 0.93748 1.01960 1.00344 1.17425 0.90726 0.97846 0.83079 1.91561 1.76926 1.93499 1.48505 1.20671 0.82849 0.86521 0.79783 1.90925 1.64520 1.18417 1.53539 1.77678 1.01811 1.14620 1.14719 0.92231 0.93405 0.92188 0.80795 0.82630 0.71114 0.84613 0.84794 0.84616 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.05 9.23 -34.44 -0.32 -15.36 16 8 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 9 C 0.26 6.57 6.26 -5.20 -0.03 6.54 16 10 N -0.31 -7.34 3.67 -62.56 -0.23 -7.57 16 11 C 0.06 1.11 11.44 -17.24 -0.20 0.91 16 12 C -0.28 -5.33 9.88 -39.85 -0.39 -5.72 16 13 C 0.25 5.17 7.68 -154.18 -1.18 3.99 16 14 N -0.49 -8.51 2.83 -65.79 -0.19 -8.70 16 15 C 0.71 10.28 8.58 -88.03 -0.76 9.52 16 16 O -0.52 -8.60 15.49 5.33 0.08 -8.52 16 17 N -0.72 -6.76 4.90 -60.33 -0.30 -7.05 16 18 C 0.14 1.57 3.64 -69.36 -0.25 1.31 16 19 H 0.14 1.19 7.95 -51.93 -0.41 0.78 16 20 C -0.14 -1.44 5.16 -104.55 -0.54 -1.98 16 21 C -0.07 -0.61 9.36 -39.59 -0.37 -0.98 16 22 C -0.13 -0.94 10.04 -39.57 -0.40 -1.34 16 23 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 24 C -0.15 -1.31 10.03 -39.52 -0.40 -1.71 16 25 C 0.13 1.38 7.25 -39.42 -0.29 1.10 16 26 F -0.13 -1.55 16.67 2.25 0.04 -1.51 16 27 C 0.52 8.64 7.59 -10.55 -0.08 8.56 16 28 O -0.41 -8.53 17.17 5.59 0.10 -8.43 16 29 N -0.26 -6.32 11.56 31.48 0.36 -5.95 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 33 H 0.17 2.63 8.06 -52.48 -0.42 2.21 16 34 H 0.16 2.76 6.52 -52.48 -0.34 2.42 16 35 H 0.44 2.55 8.96 -40.82 -0.37 2.19 16 36 H 0.14 1.07 7.17 -52.49 -0.38 0.70 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -35.37 353.26 -8.37 -43.73 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.58 Total: 1.05 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -5.70 Total: 5.59 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.39 Total: -54.10 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.18 Total: -16.95 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.37 -8.37 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586871663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.274 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds