Wall clock time and date at job start Wed Apr 1 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48505 * 109.47180 * 265.16299 * 3 2 1 5 5 H 1.48504 * 109.47354 * 25.16059 * 3 2 1 6 6 H 1.48503 * 109.47139 * 145.16390 * 3 2 1 7 7 C 1.37875 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00466 * 354.06398 * 7 2 1 9 9 C 1.50699 * 119.99777 * 174.05650 * 7 2 1 10 10 H 1.09004 * 109.47189 * 56.80074 * 9 7 2 11 11 N 1.46500 * 109.47471 * 296.79735 * 9 7 2 12 12 C 1.34781 * 119.99906 * 154.99670 * 11 9 7 13 13 O 1.21284 * 120.00201 * 0.02562 * 12 11 9 14 14 C 1.50698 * 120.00072 * 180.02562 * 12 11 9 15 15 N 1.46493 * 109.47290 * 180.02562 * 14 12 11 16 16 C 1.34774 * 119.99880 * 180.02562 * 15 14 12 17 17 O 1.21275 * 120.00331 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99708 * 179.97438 * 16 15 14 19 19 C 1.50704 * 109.46775 * 179.97438 * 18 16 15 20 20 C 1.38231 * 120.00413 * 269.72563 * 19 18 16 21 21 C 1.38231 * 120.00241 * 179.76726 * 20 19 18 22 22 C 1.38233 * 119.99871 * 0.50948 * 21 20 19 23 23 C 1.38232 * 119.99943 * 359.74527 * 22 21 20 24 24 C 1.38235 * 120.00393 * 359.97438 * 23 22 21 25 25 C 1.53002 * 109.47154 * 176.79522 * 9 7 2 26 26 F 1.39903 * 109.47303 * 185.25062 * 25 9 7 27 27 F 1.39896 * 109.47337 * 305.25752 * 25 9 7 28 28 F 1.39904 * 109.46708 * 65.25380 * 25 9 7 29 29 H 0.97002 * 119.99623 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00156 * 335.00268 * 11 9 7 31 31 H 1.09003 * 109.46694 * 300.00293 * 14 12 11 32 32 H 1.08996 * 109.47163 * 59.99787 * 14 12 11 33 33 H 0.96997 * 120.00177 * 359.97438 * 15 14 12 34 34 H 1.08998 * 109.47108 * 299.99248 * 18 16 15 35 35 H 1.09003 * 109.47339 * 60.00057 * 18 16 15 36 36 H 1.08010 * 119.99723 * 0.02562 * 20 19 18 37 37 H 1.08006 * 120.00302 * 180.22783 * 21 20 19 38 38 H 1.08001 * 120.00306 * 179.71917 * 22 21 20 39 39 H 1.08000 * 119.99904 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.00421 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5989 1.9874 -1.3951 5 1 1.3992 2.6801 0.5953 6 1 3.4919 1.4719 0.7998 7 6 2.0045 -1.1940 -0.0005 8 1 1.4689 -2.1269 0.0958 9 6 3.5054 -1.1975 -0.1357 10 1 3.9431 -0.5922 0.6582 11 7 3.8798 -0.6400 -1.4377 12 6 5.0929 -0.0772 -1.6061 13 8 5.8747 -0.0328 -0.6800 14 6 5.4779 0.4968 -2.9453 15 7 6.8345 1.0444 -2.8701 16 6 7.3924 1.6140 -3.9567 17 8 6.7716 1.6728 -4.9968 18 6 8.7879 2.1779 -3.8792 19 6 9.1729 2.7517 -5.2184 20 6 9.8016 1.9550 -6.1569 21 6 10.1503 2.4802 -7.3871 22 6 9.8799 3.8049 -7.6750 23 6 9.2559 4.6030 -6.7345 24 6 8.9019 4.0764 -5.5064 25 6 4.0240 -2.6328 -0.0273 26 9 5.4230 -2.6249 -0.0326 27 9 3.5653 -3.2057 1.1637 28 9 3.5578 -3.3803 -1.1141 29 1 -0.4850 0.8401 0.0004 30 1 3.2547 -0.6758 -2.1785 31 1 5.4448 -0.2888 -3.7003 32 1 4.7801 1.2895 -3.2150 33 1 7.3310 0.9977 -2.0381 34 1 8.8210 2.9631 -3.1240 35 1 9.4858 1.3850 -3.6099 36 1 10.0166 0.9211 -5.9305 37 1 10.6383 1.8567 -8.1218 38 1 10.1564 4.2164 -8.6344 39 1 9.0449 5.6381 -6.9592 40 1 8.4148 4.7000 -4.7715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:20 Heat of formation + Delta-G solvation = -207.998410 kcal Electronic energy + Delta-G solvation = -29707.388221 eV Core-core repulsion = 24878.736414 eV Total energy + Delta-G solvation = -4828.651808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.19226 -46.70873 -46.67214 -40.28742 -39.41891 -38.57748 -35.25119 -34.28919 -33.10059 -32.62636 -31.06882 -30.03366 -28.43912 -26.37721 -25.11445 -22.77029 -22.12475 -21.45424 -20.43450 -20.20329 -18.46437 -17.69946 -17.60486 -17.05643 -16.96913 -16.56873 -16.18202 -15.97406 -15.87137 -15.36077 -15.17644 -14.83399 -14.27805 -14.17492 -13.67780 -13.59519 -13.57912 -13.36909 -13.23821 -13.14437 -12.98182 -12.87836 -12.82820 -12.74843 -12.64562 -12.59618 -12.07542 -11.82374 -11.33799 -11.27367 -11.19183 -10.78476 -10.32028 -10.08012 -10.01105 -9.67218 -9.19435 -9.07789 -9.06846 -8.90791 -8.66620 -6.59859 -4.73681 1.13938 1.24446 2.55061 2.78488 2.88661 3.02937 3.15244 3.18995 3.54672 3.71593 3.81084 4.01217 4.41551 4.61422 4.71440 4.81295 4.84792 4.86583 4.91830 4.98670 5.03112 5.10741 5.22818 5.32173 5.33281 5.40795 5.44902 5.45846 5.80244 5.85364 6.20204 6.26254 6.32283 6.32799 6.39610 6.77121 6.81547 6.86818 7.44494 7.73339 8.01946 8.16269 8.41012 8.53138 8.93346 10.48550 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.002626 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.994080 B =10658.458609 C =11692.662738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.097 3.903 3 Si 0.876 3.124 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.096 0.904 9 C 0.203 3.797 10 H 0.093 0.907 11 N -0.710 5.710 12 C 0.494 3.506 13 O -0.539 6.539 14 C 0.095 3.905 15 N -0.716 5.716 16 C 0.515 3.485 17 O -0.534 6.534 18 C -0.102 4.102 19 C -0.064 4.064 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.105 4.105 25 C 0.443 3.557 26 F -0.194 7.194 27 F -0.183 7.183 28 F -0.189 7.189 29 H 0.276 0.724 30 H 0.406 0.594 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.805 5.887 -9.582 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.113 4.113 3 Si 0.702 3.298 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.114 0.886 9 C 0.100 3.900 10 H 0.111 0.889 11 N -0.363 5.363 12 C 0.280 3.720 13 O -0.417 6.417 14 C -0.032 4.032 15 N -0.372 5.372 16 C 0.301 3.699 17 O -0.410 6.410 18 C -0.142 4.142 19 C -0.065 4.065 20 C -0.123 4.123 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.123 4.123 25 C 0.388 3.612 26 F -0.175 7.175 27 F -0.164 7.164 28 F -0.170 7.170 29 H 0.086 0.914 30 H 0.242 0.758 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.250 0.750 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.711 6.016 -9.640 20.208 hybrid contribution 0.191 0.524 0.035 0.559 sum 16.902 6.541 -9.605 20.511 Atomic orbital electron populations 1.69865 1.06379 1.28415 1.44511 1.24915 0.94788 0.99219 0.92378 0.86824 0.80612 0.82779 0.79553 1.19526 1.20968 1.18284 1.20793 0.86389 0.96648 1.53850 0.88567 1.20292 0.98904 0.85302 0.85530 0.88946 1.47541 1.15214 1.57904 1.15625 1.20750 0.82923 0.78637 0.89729 1.90664 1.50525 1.58158 1.42376 1.21172 0.85294 1.00364 0.96365 1.45732 1.16241 1.60341 1.14889 1.20502 0.88252 0.77910 0.83264 1.90735 1.63816 1.56948 1.29524 1.20669 0.94411 1.02372 0.96755 1.19282 0.98350 0.93979 0.94845 1.20998 0.98465 0.99304 0.93561 1.21100 1.00428 0.95571 0.96721 1.21138 0.99392 0.94261 0.99260 1.21102 0.99043 0.99879 0.93795 1.21004 0.99183 0.94861 0.97279 1.21417 0.74528 0.92081 0.73210 1.93145 1.31019 1.97140 1.96238 1.93115 1.88820 1.86761 1.47714 1.93094 1.88574 1.79638 1.55732 0.91392 0.75753 0.88303 0.88500 0.74993 0.87693 0.87659 0.86179 0.86109 0.86239 0.86116 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.99 13.96 55.43 0.77 -22.22 16 2 C 0.10 2.43 5.46 -17.82 -0.10 2.33 16 3 Si 0.88 19.37 26.13 -169.99 -4.44 14.93 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -5.83 6.55 56.52 0.37 -5.46 16 7 C -0.54 -13.27 8.64 -34.44 -0.30 -13.57 16 8 H 0.10 2.60 7.91 -52.49 -0.42 2.19 16 9 C 0.20 4.41 1.41 -69.08 -0.10 4.31 16 10 H 0.09 2.13 6.29 -51.93 -0.33 1.80 16 11 N -0.71 -13.47 3.20 -54.93 -0.18 -13.64 16 12 C 0.49 8.77 7.29 -10.98 -0.08 8.69 16 13 O -0.54 -10.69 14.24 5.55 0.08 -10.61 16 14 C 0.10 1.39 6.15 -5.20 -0.03 1.36 16 15 N -0.72 -9.42 5.53 -61.48 -0.34 -9.76 16 16 C 0.51 6.70 7.82 -10.98 -0.09 6.61 16 17 O -0.53 -8.89 16.03 5.56 0.09 -8.80 16 18 C -0.10 -0.95 5.83 -29.03 -0.17 -1.12 16 19 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 20 C -0.11 -1.07 9.70 -39.59 -0.38 -1.46 16 21 C -0.12 -1.13 10.05 -39.59 -0.40 -1.52 16 22 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 25 C 0.44 9.31 2.79 37.16 0.10 9.41 16 26 F -0.19 -3.99 15.84 2.25 0.04 -3.96 16 27 F -0.18 -3.91 16.83 2.25 0.04 -3.88 16 28 F -0.19 -3.89 16.97 2.25 0.04 -3.85 16 29 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.41 7.07 8.59 -40.82 -0.35 6.72 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.41 5.06 7.44 -40.82 -0.30 4.76 16 34 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.11 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -30.41 360.10 -6.01 -36.42 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.36 Total: 10.55 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -3.17 Total: 9.38 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.26 Total: -45.62 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.17 Total: -19.41 kcal Atomic # 9 Polarization: -11.79 SS G_CDS: 0.11 Total: -11.68 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.44 Total: 14.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.41 -6.01 -36.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.580 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds