Wall clock time and date at job start Wed Apr 1 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48505 * 109.47180 * 265.16299 * 3 2 1 5 5 H 1.48504 * 109.47354 * 25.16059 * 3 2 1 6 6 H 1.48503 * 109.47139 * 145.16390 * 3 2 1 7 7 C 1.37875 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00466 * 354.06398 * 7 2 1 9 9 C 1.50699 * 119.99777 * 174.05650 * 7 2 1 10 10 H 1.09004 * 109.47189 * 56.80074 * 9 7 2 11 11 N 1.46500 * 109.47471 * 296.79735 * 9 7 2 12 12 C 1.34781 * 119.99906 * 154.99670 * 11 9 7 13 13 O 1.21284 * 120.00201 * 0.02562 * 12 11 9 14 14 C 1.50698 * 120.00072 * 180.02562 * 12 11 9 15 15 N 1.46493 * 109.47290 * 180.02562 * 14 12 11 16 16 C 1.34774 * 119.99880 * 180.02562 * 15 14 12 17 17 O 1.21275 * 120.00331 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99708 * 179.97438 * 16 15 14 19 19 C 1.50704 * 109.46775 * 179.97438 * 18 16 15 20 20 C 1.38231 * 120.00413 * 269.72563 * 19 18 16 21 21 C 1.38231 * 120.00241 * 179.76726 * 20 19 18 22 22 C 1.38233 * 119.99871 * 0.50948 * 21 20 19 23 23 C 1.38232 * 119.99943 * 359.74527 * 22 21 20 24 24 C 1.38235 * 120.00393 * 359.97438 * 23 22 21 25 25 C 1.53002 * 109.47154 * 176.79522 * 9 7 2 26 26 F 1.39903 * 109.47303 * 185.25062 * 25 9 7 27 27 F 1.39896 * 109.47337 * 305.25752 * 25 9 7 28 28 F 1.39904 * 109.46708 * 65.25380 * 25 9 7 29 29 H 0.97002 * 119.99623 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00156 * 335.00268 * 11 9 7 31 31 H 1.09003 * 109.46694 * 300.00293 * 14 12 11 32 32 H 1.08996 * 109.47163 * 59.99787 * 14 12 11 33 33 H 0.96997 * 120.00177 * 359.97438 * 15 14 12 34 34 H 1.08998 * 109.47108 * 299.99248 * 18 16 15 35 35 H 1.09003 * 109.47339 * 60.00057 * 18 16 15 36 36 H 1.08010 * 119.99723 * 0.02562 * 20 19 18 37 37 H 1.08006 * 120.00302 * 180.22783 * 21 20 19 38 38 H 1.08001 * 120.00306 * 179.71917 * 22 21 20 39 39 H 1.08000 * 119.99904 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.00421 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5989 1.9874 -1.3951 5 1 1.3992 2.6801 0.5953 6 1 3.4919 1.4719 0.7998 7 6 2.0045 -1.1940 -0.0005 8 1 1.4689 -2.1269 0.0958 9 6 3.5054 -1.1975 -0.1357 10 1 3.9431 -0.5922 0.6582 11 7 3.8798 -0.6400 -1.4377 12 6 5.0929 -0.0772 -1.6061 13 8 5.8747 -0.0328 -0.6800 14 6 5.4779 0.4968 -2.9453 15 7 6.8345 1.0444 -2.8701 16 6 7.3924 1.6140 -3.9567 17 8 6.7716 1.6728 -4.9968 18 6 8.7879 2.1779 -3.8792 19 6 9.1729 2.7517 -5.2184 20 6 9.8016 1.9550 -6.1569 21 6 10.1503 2.4802 -7.3871 22 6 9.8799 3.8049 -7.6750 23 6 9.2559 4.6030 -6.7345 24 6 8.9019 4.0764 -5.5064 25 6 4.0240 -2.6328 -0.0273 26 9 5.4230 -2.6249 -0.0326 27 9 3.5653 -3.2057 1.1637 28 9 3.5578 -3.3803 -1.1141 29 1 -0.4850 0.8401 0.0004 30 1 3.2547 -0.6758 -2.1785 31 1 5.4448 -0.2888 -3.7003 32 1 4.7801 1.2895 -3.2150 33 1 7.3310 0.9977 -2.0381 34 1 8.8210 2.9631 -3.1240 35 1 9.4858 1.3850 -3.6099 36 1 10.0166 0.9211 -5.9305 37 1 10.6383 1.8567 -8.1218 38 1 10.1564 4.2164 -8.6344 39 1 9.0449 5.6381 -6.9592 40 1 8.4148 4.7000 -4.7715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:19 Heat of formation + Delta-G solvation = -227.507205 kcal Electronic energy + Delta-G solvation = -29708.234186 eV Core-core repulsion = 24878.736414 eV Total energy + Delta-G solvation = -4829.497773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.90518 -48.41381 -48.38737 -41.39016 -40.59883 -39.51955 -36.87664 -35.48920 -34.48519 -33.84345 -31.74594 -31.58607 -29.51080 -27.43425 -26.96056 -23.45555 -23.42853 -22.66835 -21.70442 -21.36776 -20.15579 -19.37913 -18.92259 -18.62016 -18.37304 -17.80613 -17.36633 -17.22206 -16.99945 -16.56949 -16.20976 -15.87175 -15.62454 -15.38397 -15.28185 -15.24627 -14.85908 -14.84228 -14.67317 -14.58701 -14.52517 -14.26015 -14.16755 -13.95396 -13.89560 -13.57378 -13.35374 -13.01063 -12.88421 -12.55703 -12.10348 -11.99703 -11.92471 -11.84850 -11.25444 -11.10874 -10.95497 -10.34361 -10.20786 -9.77868 -9.62239 -8.54234 -6.72291 0.42705 0.54335 1.22493 1.28213 1.38451 1.44514 1.58468 1.69713 2.05399 2.17007 2.34804 2.92129 2.95937 3.12575 3.32962 3.39997 3.68226 3.71940 3.96439 4.01787 4.18247 4.24351 4.30164 4.33859 4.40539 4.49349 4.59932 4.67277 4.79837 4.91778 5.12953 5.18518 5.21195 5.25940 5.58257 5.64744 5.68614 5.85531 6.14737 6.40946 6.44666 6.49453 6.97699 7.03602 7.15459 8.58240 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.002626 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.994080 B =10658.458609 C =11692.662738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.061 3.939 3 Si 0.927 3.073 4 H -0.248 1.248 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.212 3.788 10 H 0.084 0.916 11 N -0.711 5.711 12 C 0.498 3.502 13 O -0.557 6.557 14 C 0.103 3.897 15 N -0.714 5.714 16 C 0.517 3.483 17 O -0.573 6.573 18 C -0.095 4.095 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.123 4.123 25 C 0.446 3.554 26 F -0.188 7.188 27 F -0.187 7.187 28 F -0.186 7.186 29 H 0.279 0.721 30 H 0.415 0.585 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.418 0.582 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.770 6.994 -10.579 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.751 3.249 4 H -0.172 1.172 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.108 3.892 10 H 0.101 0.899 11 N -0.365 5.365 12 C 0.285 3.715 13 O -0.436 6.436 14 C -0.024 4.024 15 N -0.370 5.370 16 C 0.305 3.695 17 O -0.452 6.452 18 C -0.135 4.135 19 C -0.082 4.082 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.141 4.141 25 C 0.390 3.610 26 F -0.170 7.170 27 F -0.168 7.168 28 F -0.167 7.167 29 H 0.089 0.911 30 H 0.253 0.747 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.257 0.743 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.700 7.120 -10.647 22.666 hybrid contribution -0.373 0.114 0.329 0.510 sum 18.327 7.234 -10.317 22.241 Atomic orbital electron populations 1.69951 1.07858 1.29380 1.46476 1.25494 0.95187 1.01909 0.91933 0.86018 0.79009 0.79277 0.80560 1.17168 1.21130 1.18850 1.20723 0.87779 0.95433 1.54045 0.91869 1.19904 0.96969 0.85812 0.86545 0.89854 1.47126 1.16268 1.58325 1.14763 1.21146 0.81887 0.77783 0.90704 1.90661 1.50863 1.58639 1.43411 1.21072 0.86356 1.00838 0.94181 1.45754 1.15625 1.60214 1.15358 1.21099 0.89198 0.76907 0.82290 1.90721 1.65061 1.58489 1.30896 1.20721 0.92233 1.03578 0.96930 1.19508 0.98824 0.94303 0.95583 1.21267 0.98783 0.99923 0.94005 1.21428 1.00339 0.96118 0.96978 1.21476 0.98934 0.94283 1.00128 1.21420 0.98877 1.00938 0.93701 1.21264 0.99634 0.95217 0.98007 1.21286 0.74711 0.91792 0.73180 1.93154 1.30507 1.97109 1.96216 1.93107 1.88918 1.86796 1.47995 1.93099 1.88585 1.79512 1.55532 0.91077 0.74698 0.86936 0.87938 0.74320 0.85477 0.85304 0.85255 0.84301 0.84151 0.84420 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.85 13.96 21.45 0.30 -48.55 16 2 C 0.06 3.05 5.46 84.65 0.46 3.51 16 3 Si 0.93 39.13 26.13 68.60 1.79 40.93 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.26 -11.32 6.55 99.48 0.65 -10.67 16 7 C -0.54 -26.89 8.64 25.60 0.22 -26.67 16 8 H 0.06 3.52 7.91 -2.91 -0.02 3.49 16 9 C 0.21 9.08 1.41 44.25 0.06 9.14 16 10 H 0.08 3.76 6.29 -2.38 -0.02 3.75 16 11 N -0.71 -25.83 3.20 -446.08 -1.43 -27.26 16 12 C 0.50 16.56 7.29 87.66 0.64 17.20 16 13 O -0.56 -20.86 14.24 -3.04 -0.04 -20.90 16 14 C 0.10 2.75 6.15 85.63 0.53 3.27 16 15 N -0.71 -16.95 5.53 -466.81 -2.58 -19.53 16 16 C 0.52 12.30 7.82 87.66 0.69 12.98 16 17 O -0.57 -18.16 16.03 -3.01 -0.05 -18.21 16 18 C -0.10 -1.53 5.83 29.11 0.17 -1.36 16 19 C -0.08 -1.60 4.37 -19.86 -0.09 -1.69 16 20 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 23 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 24 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 25 C 0.45 18.41 2.79 71.98 0.20 18.61 16 26 F -0.19 -7.48 15.84 44.97 0.71 -6.77 16 27 F -0.19 -7.97 16.83 44.97 0.76 -7.21 16 28 F -0.19 -7.50 16.97 44.97 0.76 -6.74 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.42 13.80 8.59 -92.71 -0.80 13.00 16 31 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.10 2.69 8.14 -2.39 -0.02 2.68 16 33 H 0.42 9.13 7.44 -92.71 -0.69 8.44 16 34 H 0.13 1.47 8.09 -2.39 -0.02 1.45 16 35 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 36 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -64.65 360.10 3.79 -60.86 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.42 Total: 28.62 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 3.98 Total: 24.76 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.71 Total: -95.33 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.09 Total: -39.11 kcal Atomic # 9 Polarization: -22.95 SS G_CDS: 2.23 Total: -20.72 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.79 Total: 40.93 kcal Total: -64.65 3.79 -60.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.650 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds