Wall clock time and date at job start Wed Apr 1 2020 02:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42097 * 108.57688 * 2 1 4 4 O 1.42098 * 108.57848 * 228.97016 * 2 1 3 5 5 C 1.81408 * 101.92049 * 114.48050 * 2 1 3 6 6 C 1.50695 * 109.46955 * 180.02562 * 5 2 1 7 7 C 1.38275 * 119.97644 * 270.23311 * 6 5 2 8 8 C 1.38167 * 120.02702 * 180.27681 * 7 6 5 9 9 C 1.38488 * 119.97583 * 359.74846 * 8 7 6 10 10 F 1.35101 * 120.02640 * 180.02562 * 9 8 7 11 11 C 1.38440 * 119.94765 * 359.97438 * 9 8 7 12 12 C 1.38218 * 119.97514 * 90.00323 * 6 5 2 13 13 C 1.50703 * 119.98608 * 359.97438 * 12 6 5 14 14 N 1.46505 * 109.47064 * 79.72245 * 13 12 6 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 12 16 16 O 1.21584 * 120.00541 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99489 * 180.02562 * 15 14 13 18 18 C 1.46505 * 119.99511 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.46708 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00462 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00032 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00203 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00175 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47108 * 60.00262 * 23 21 19 25 25 H 1.48505 * 109.47276 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47359 * 299.99971 * 23 21 19 27 27 H 1.09000 * 109.47002 * 305.51195 * 1 2 3 28 28 H 1.08993 * 109.46926 * 65.52271 * 1 2 3 29 29 H 1.09006 * 109.46722 * 185.51712 * 1 2 3 30 30 H 1.09006 * 109.46722 * 60.00503 * 5 2 1 31 31 H 1.08995 * 109.47067 * 300.00605 * 5 2 1 32 32 H 1.08004 * 119.98131 * 0.02562 * 7 6 5 33 33 H 1.07999 * 120.01511 * 179.72287 * 8 7 6 34 34 H 1.07991 * 120.01786 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.47152 * 319.72328 * 13 12 6 36 36 H 1.09001 * 109.46980 * 199.72428 * 13 12 6 37 37 H 0.96996 * 119.99606 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00377 * 0.02562 * 17 15 14 39 39 H 1.08994 * 109.47121 * 299.99693 * 18 17 15 40 40 H 1.08994 * 109.47503 * 60.00345 * 18 17 15 41 41 H 0.96994 * 120.00630 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1888 -0.7355 1.6154 6 6 3.6827 -0.8170 1.7958 7 6 4.3687 -1.9424 1.3777 8 6 5.7376 -2.0206 1.5479 9 6 6.4234 -0.9691 2.1327 10 9 7.7620 -1.0442 2.2990 11 6 5.7363 0.1596 2.5457 12 6 4.3667 0.2353 2.3748 13 6 3.6183 1.4636 2.8248 14 7 2.9853 1.2026 4.1200 15 6 2.2582 2.1653 4.7207 16 8 2.1271 3.2501 4.1876 17 7 1.6763 1.9253 5.9125 18 6 0.8853 2.9716 6.5652 19 6 0.3492 2.4527 7.8746 20 1 0.5746 1.4443 8.1889 21 6 -0.4292 3.2653 8.6713 22 7 -0.7034 4.4934 8.2890 23 14 -1.0944 2.6219 10.2940 24 1 0.0372 2.2343 11.1740 25 1 -1.8950 3.6828 10.9564 26 1 -1.9537 1.4372 10.0419 27 1 -0.3633 0.5969 0.8365 28 1 -0.3633 0.4258 -0.9353 29 1 -0.3633 -1.0230 0.0988 30 1 1.7611 -1.7369 1.6666 31 1 1.7610 -0.1169 2.4043 32 1 3.8337 -2.7622 0.9217 33 1 6.2727 -2.9015 1.2253 34 1 6.2700 0.9803 3.0015 35 1 2.8528 1.7122 2.0897 36 1 4.3136 2.2975 2.9215 37 1 3.0903 0.3373 4.5454 38 1 1.7811 1.0600 6.3380 39 1 1.5156 3.8413 6.7503 40 1 0.0548 3.2556 5.9191 41 1 -1.2506 5.0652 8.8496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672243765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:25 Heat of formation + Delta-G solvation = -118.958967 kcal Electronic energy + Delta-G solvation = -27609.869965 eV Core-core repulsion = 23338.919584 eV Total energy + Delta-G solvation = -4270.950381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.104 amu Computer time = 4.56 seconds Orbital eigenvalues (eV) -49.22237 -40.23425 -38.97242 -37.26943 -36.28558 -34.99938 -34.06604 -33.10560 -32.41279 -31.50405 -29.98083 -27.92997 -27.21367 -25.77056 -22.96936 -22.53201 -21.44979 -20.26049 -19.18873 -18.35114 -17.57530 -17.22346 -17.05384 -16.80608 -16.13113 -16.07407 -15.93355 -15.63755 -15.51670 -14.98800 -14.66004 -14.33991 -14.09936 -13.84694 -13.64619 -13.51025 -13.37140 -13.10173 -12.91027 -12.84781 -12.72946 -12.35907 -12.27466 -12.11658 -11.98216 -11.65639 -11.44714 -11.32344 -11.08257 -11.00012 -10.89470 -10.33054 -9.66665 -9.41590 -9.31368 -8.93142 -8.85201 -8.71981 -7.81183 -6.17741 -4.24740 -0.47451 0.66784 0.77047 2.37622 2.94534 3.23321 3.25759 3.28672 3.29835 3.49912 3.65158 3.82621 3.88778 3.97802 4.17040 4.30777 4.37220 4.45405 4.48569 4.67018 4.72080 4.95017 5.02979 5.09509 5.18212 5.35155 5.35267 5.38138 5.53978 5.70411 5.78705 5.87823 6.08324 6.41767 6.70788 7.05919 7.46470 7.50834 7.54241 7.86427 8.00601 8.72621 8.89058 9.28224 9.44362 10.92362 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.002835 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.291739 B = 9874.116876 C =11323.871226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.412 3.588 3 O -0.922 6.922 4 O -0.936 6.936 5 C -0.575 4.575 6 C -0.085 4.085 7 C -0.073 4.073 8 C -0.148 4.148 9 C 0.108 3.892 10 F -0.135 7.135 11 C -0.132 4.132 12 C -0.053 4.053 13 C 0.163 3.837 14 N -0.757 5.757 15 C 0.690 3.310 16 O -0.594 6.594 17 N -0.729 5.729 18 C 0.267 3.733 19 C -0.544 4.544 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.276 1.276 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.392 0.608 38 H 0.386 0.614 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 -16.797 -15.969 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.594 3.406 3 O -0.919 6.919 4 O -0.933 6.933 5 C -0.702 4.702 6 C -0.087 4.087 7 C -0.092 4.092 8 C -0.167 4.167 9 C 0.089 3.911 10 F -0.114 7.114 11 C -0.152 4.152 12 C -0.055 4.055 13 C 0.039 3.961 14 N -0.415 5.415 15 C 0.390 3.610 16 O -0.472 6.472 17 N -0.381 5.381 18 C 0.146 3.854 19 C -0.582 4.582 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.226 0.774 38 H 0.218 0.782 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.100 -15.237 -17.034 24.247 hybrid contribution -0.626 -1.436 2.025 2.561 sum 7.473 -16.673 -15.008 23.645 Atomic orbital electron populations 1.30290 1.26297 1.11719 1.12388 1.08285 0.78642 0.76258 0.77424 1.93635 1.78857 1.33675 1.85737 1.93590 1.79240 1.67149 1.53348 1.29442 1.00763 1.15331 1.24634 1.18813 0.91864 0.95407 1.02609 1.20978 0.93513 0.97276 0.97442 1.21172 0.94864 0.99034 1.01637 1.17743 0.77508 0.95687 1.00194 1.91528 1.29942 1.96551 1.93360 1.21142 0.94083 0.98109 1.01837 1.19752 0.93162 0.95519 0.97040 1.20218 0.97217 0.93142 0.85565 1.45225 1.57189 1.16639 1.22489 1.16165 0.79133 0.83839 0.81857 1.90910 1.66559 1.23572 1.66157 1.45742 1.54389 1.18673 1.19284 1.18991 0.89759 0.85454 0.91209 1.21182 1.33053 0.99806 1.04156 0.92028 1.24940 0.95873 0.94728 0.98431 1.69962 1.37325 1.06863 1.38064 0.86478 0.78971 0.78461 0.82979 1.20099 1.21070 1.20125 0.84717 0.85015 0.85288 0.83520 0.83185 0.83933 0.84023 0.83657 0.88803 0.90109 0.77432 0.78166 0.95672 0.95674 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 96. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.66 10.62 101.05 1.07 -2.59 16 2 S 2.41 20.54 5.34 -107.50 -0.57 19.96 16 3 O -0.92 -11.78 16.04 -57.83 -0.93 -12.71 16 4 O -0.94 -10.24 18.10 -57.83 -1.05 -11.29 16 5 C -0.58 -3.98 5.26 36.00 0.19 -3.79 16 6 C -0.08 -0.76 5.14 -104.62 -0.54 -1.30 16 7 C -0.07 -0.57 9.70 -39.59 -0.38 -0.95 16 8 C -0.15 -1.20 10.03 -39.52 -0.40 -1.59 16 9 C 0.11 1.05 7.30 -39.42 -0.29 0.76 16 10 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 11 C -0.13 -1.33 9.65 -39.51 -0.38 -1.71 16 12 C -0.05 -0.56 5.25 -104.63 -0.55 -1.11 16 13 C 0.16 2.14 4.93 -5.19 -0.03 2.11 16 14 N -0.76 -10.51 4.87 -66.41 -0.32 -10.84 16 15 C 0.69 13.54 8.57 -86.92 -0.74 12.79 16 16 O -0.59 -14.41 16.34 5.29 0.09 -14.32 16 17 N -0.73 -14.85 5.55 -66.42 -0.37 -15.22 16 18 C 0.27 6.95 5.43 -5.19 -0.03 6.92 16 19 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 20 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 23 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.13 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.15 0.45 8.09 -51.92 -0.42 0.03 16 31 H 0.15 1.09 6.33 -51.93 -0.33 0.76 16 32 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.15 1.33 8.04 -52.49 -0.42 0.91 16 35 H 0.09 1.31 5.13 -51.93 -0.27 1.05 16 36 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 37 H 0.39 4.30 8.48 -40.82 -0.35 3.96 16 38 H 0.39 6.63 8.34 -40.82 -0.34 6.29 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -37.80 369.38 -9.35 -47.15 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.03 Total: 6.16 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.49 Total: -3.56 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.04 Total: -51.06 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.89 Total: -38.31 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 20.54 SS G_CDS: -0.57 Total: 19.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.80 -9.35 -47.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672243765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.807 kcal (2) G-P(sol) polarization free energy of solvation -37.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.56 seconds