Wall clock time and date at job start Wed Apr 1 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.01302 * 2 1 4 4 C 1.50601 * 109.92900 * 238.98003 * 2 1 3 5 5 N 1.29728 * 128.68921 * 50.08535 * 4 2 1 6 6 N 1.28934 * 109.42608 * 179.61919 * 5 4 2 7 7 C 1.30826 * 109.73903 * 0.10614 * 6 5 4 8 8 N 1.34790 * 107.11873 * 0.13077 * 7 6 5 9 9 C 1.46217 * 128.59976 * 179.54603 * 8 7 6 10 10 C 1.53329 * 109.17412 * 161.61923 * 9 8 7 11 11 N 1.47081 * 109.24787 * 45.66097 * 10 9 8 12 12 C 1.34777 * 120.94414 * 116.43113 * 11 10 9 13 13 O 1.21551 * 120.00021 * 173.74274 * 12 11 10 14 14 C 1.47863 * 119.99878 * 353.73760 * 12 11 10 15 15 C 1.39679 * 120.10168 * 311.58201 * 14 12 11 16 16 C 1.38035 * 120.03456 * 179.97438 * 15 14 12 17 17 C 1.38183 * 120.24884 * 0.02562 * 16 15 14 18 18 C 1.39177 * 120.19855 * 0.02562 * 17 16 15 19 19 S 1.76198 * 120.01924 * 179.97438 * 18 17 16 20 20 C 1.76204 * 100.00012 * 94.95185 * 19 18 17 21 21 H 1.07997 * 119.99845 * 354.99328 * 20 19 18 22 22 C 1.38727 * 120.00140 * 174.98539 * 20 19 18 23 23 N 1.31622 * 119.99803 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00147 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47217 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47148 * 300.00512 * 24 22 20 27 27 H 1.48501 * 109.46788 * 60.00487 * 24 22 20 28 28 C 1.38871 * 119.96138 * 0.23464 * 18 17 16 29 29 H 1.09000 * 109.47009 * 309.47986 * 1 2 3 30 30 H 1.08998 * 109.47467 * 69.48430 * 1 2 3 31 31 H 1.09008 * 109.47249 * 189.48540 * 1 2 3 32 32 H 1.07999 * 126.43483 * 180.12853 * 7 6 5 33 33 H 1.09003 * 109.52228 * 41.70485 * 9 8 7 34 34 H 1.09002 * 109.52168 * 281.52256 * 9 8 7 35 35 H 1.09005 * 109.50955 * 285.73415 * 10 9 8 36 36 H 1.09006 * 109.51022 * 165.59546 * 10 9 8 37 37 H 1.07998 * 119.97910 * 0.02562 * 15 14 12 38 38 H 1.08001 * 119.87770 * 180.02562 * 16 15 14 39 39 H 1.08000 * 119.89639 * 179.97438 * 17 16 15 40 40 H 0.97005 * 120.00216 * 179.97438 * 23 22 20 41 41 H 1.08004 * 120.12445 * 179.72007 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0433 -0.7296 -1.2133 5 7 1.7089 -0.5710 -2.4567 6 7 2.3861 -1.3868 -3.1903 7 6 3.1813 -2.1023 -2.4371 8 7 2.9824 -1.7082 -1.1636 9 6 3.6199 -2.2046 0.0551 10 6 3.4314 -1.1763 1.1767 11 7 2.0335 -0.7192 1.1855 12 6 1.2336 -0.9556 2.2442 13 8 0.1185 -0.4736 2.2831 14 6 1.7127 -1.8015 3.3583 15 6 2.3082 -3.0371 3.0939 16 6 2.7554 -3.8254 4.1351 17 6 2.6162 -3.3977 5.4416 18 6 2.0234 -2.1689 5.7166 19 16 1.8477 -1.6285 7.3844 20 6 3.2998 -0.6428 7.5413 21 1 4.0161 -0.6044 6.7340 22 6 3.5227 0.0841 8.7017 23 7 2.6498 0.0370 9.6856 24 14 5.0625 1.1285 8.8682 25 1 5.0638 1.8008 10.1923 26 1 6.2631 0.2625 8.7510 27 1 5.0843 2.1530 7.7935 28 6 1.5656 -1.3714 4.6760 29 1 -0.3633 0.6534 0.7932 30 1 -0.3634 0.3601 -0.9624 31 1 -0.3634 -1.0137 0.1694 32 1 3.8679 -2.8654 -2.7728 33 1 4.6842 -2.3552 -0.1260 34 1 3.1619 -3.1497 0.3468 35 1 4.0914 -0.3258 1.0056 36 1 3.6701 -1.6360 2.1359 37 1 2.4195 -3.3753 2.0744 38 1 3.2158 -4.7801 3.9277 39 1 2.9677 -4.0193 6.2519 40 1 2.8059 0.5449 10.4972 41 1 1.1010 -0.4193 4.8866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332594352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:01 Heat of formation + Delta-G solvation = 77.175210 kcal Electronic energy + Delta-G solvation = -27193.949787 eV Core-core repulsion = 23394.566397 eV Total energy + Delta-G solvation = -3799.383389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.105 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.39479 -41.71591 -39.44972 -38.08767 -35.67890 -34.63382 -34.10257 -32.04300 -31.78019 -31.14234 -29.64891 -27.72664 -26.38465 -24.91375 -24.42791 -23.69643 -23.29612 -21.92230 -20.49741 -19.69036 -18.97147 -18.18228 -17.72213 -17.49760 -17.01476 -16.91338 -16.83400 -16.55560 -15.99489 -15.72298 -15.41508 -15.18579 -14.80513 -14.66783 -14.46416 -14.17683 -13.85685 -13.62407 -13.31043 -13.23440 -13.14060 -13.05912 -12.93620 -12.82647 -12.57695 -12.43953 -12.40710 -11.74373 -11.52690 -11.20231 -11.14942 -10.77776 -10.71148 -10.41042 -10.13038 -9.92490 -9.66654 -8.79976 -8.37224 -6.17795 -0.10808 0.24366 0.75420 1.21795 1.31993 1.40790 1.47355 1.48125 1.59735 1.72414 1.78760 2.25058 2.65631 2.94571 2.96497 3.22630 3.30975 3.43684 3.59012 3.81601 3.87820 3.93368 3.97421 4.00219 4.06494 4.31868 4.36264 4.40242 4.46169 4.57665 4.63479 4.67886 4.71211 4.86201 4.89602 4.96624 5.09653 5.22277 5.28832 5.30371 5.39899 5.51069 5.79604 5.84552 6.03902 6.17376 6.84860 7.03156 7.61948 8.69489 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.002785 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.304971 B =10051.018198 C =10195.375306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.238 3.762 3 H 0.114 0.886 4 C 0.162 3.838 5 N -0.318 5.318 6 N -0.351 5.351 7 C 0.180 3.820 8 N -0.467 5.467 9 C 0.085 3.915 10 C 0.077 3.923 11 N -0.612 5.612 12 C 0.575 3.425 13 O -0.550 6.550 14 C -0.145 4.145 15 C -0.072 4.072 16 C -0.110 4.110 17 C -0.066 4.066 18 C -0.119 4.119 19 S -0.103 6.103 20 C -0.531 4.531 21 H 0.074 0.926 22 C 0.018 3.982 23 N -0.909 5.909 24 Si 0.991 3.009 25 H -0.278 1.278 26 H -0.259 1.259 27 H -0.267 1.267 28 C -0.048 4.048 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.270 0.730 33 H 0.158 0.842 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.134 0.866 40 H 0.273 0.727 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.474 -8.914 -20.580 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.133 3.867 3 H 0.131 0.869 4 C -0.109 4.109 5 N -0.157 5.157 6 N -0.189 5.189 7 C -0.108 4.108 8 N -0.158 5.158 9 C -0.037 4.037 10 C -0.045 4.045 11 N -0.346 5.346 12 C 0.365 3.635 13 O -0.427 6.427 14 C -0.150 4.150 15 C -0.090 4.090 16 C -0.130 4.130 17 C -0.087 4.087 18 C -0.230 4.230 19 S 0.132 5.868 20 C -0.679 4.679 21 H 0.092 0.908 22 C -0.187 4.187 23 N -0.545 5.545 24 Si 0.813 3.187 25 H -0.203 1.203 26 H -0.183 1.183 27 H -0.192 1.192 28 C -0.070 4.070 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.285 0.715 33 H 0.176 0.824 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.181 0.819 38 H 0.195 0.805 39 H 0.152 0.848 40 H 0.082 0.918 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.328 -8.285 -20.765 23.235 hybrid contribution 1.748 0.736 0.856 2.081 sum 8.076 -7.549 -19.908 22.772 Atomic orbital electron populations 1.21965 0.91098 1.02885 1.02772 1.19597 0.96058 0.94251 0.76797 0.86862 1.24784 0.94543 0.94993 0.96568 1.73965 1.21757 1.20044 0.99930 1.74434 1.09322 1.07615 1.27575 1.27241 1.01947 1.02186 0.79399 1.46324 1.31099 1.28543 1.09805 1.22896 1.02508 0.98388 0.79902 1.22564 0.80851 0.99594 1.01499 1.48235 1.12878 1.57704 1.15789 1.18498 0.84051 0.79362 0.81588 1.90807 1.21624 1.51266 1.79045 1.19774 1.05435 0.98051 0.91738 1.21601 0.94884 0.91503 1.01062 1.21515 0.99826 1.01208 0.90412 1.22054 0.94011 0.93856 0.98754 1.22456 1.03079 0.98497 0.98956 1.83691 1.35432 1.62539 1.05125 1.23033 1.06573 1.32851 1.05404 0.90760 1.26019 1.01000 0.97281 0.94387 1.70114 1.36894 1.41189 1.06321 0.85099 0.77683 0.78127 0.77769 1.20262 1.18329 1.19200 1.21505 0.95654 0.98506 0.91356 0.89906 0.91107 0.93715 0.71471 0.82434 0.86711 0.88057 0.85248 0.81935 0.80543 0.84821 0.91824 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 7.71 71.98 0.56 -2.66 16 2 C 0.24 5.02 3.82 44.02 0.17 5.18 16 3 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.16 3.37 7.15 138.10 0.99 4.35 16 5 N -0.32 -8.45 12.13 -50.49 -0.61 -9.06 16 6 N -0.35 -8.31 12.23 -60.27 -0.74 -9.05 16 7 C 0.18 2.31 12.81 180.25 2.31 4.62 16 8 N -0.47 -6.00 3.11 -519.71 -1.62 -7.62 16 9 C 0.08 0.37 7.06 86.54 0.61 0.98 16 10 C 0.08 0.80 5.60 86.38 0.48 1.28 16 11 N -0.61 -11.98 2.97 -800.98 -2.38 -14.37 16 12 C 0.58 15.78 6.91 86.79 0.60 16.38 16 13 O -0.55 -19.23 13.24 -3.87 -0.05 -19.28 16 14 C -0.14 -3.97 4.85 -20.10 -0.10 -4.07 16 15 C -0.07 -1.31 7.53 22.57 0.17 -1.14 16 16 C -0.11 -2.09 10.02 22.21 0.22 -1.87 16 17 C -0.07 -1.98 9.79 22.48 0.22 -1.76 16 18 C -0.12 -4.70 5.45 22.65 0.12 -4.57 16 19 S -0.10 -5.29 21.41 -56.49 -1.21 -6.50 16 20 C -0.53 -29.08 9.46 67.94 0.64 -28.44 16 21 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 22 C 0.02 0.99 5.49 84.84 0.47 1.46 16 23 N -0.91 -53.07 13.22 21.63 0.29 -52.79 16 24 Si 0.99 41.92 29.55 68.60 2.03 43.94 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 C -0.05 -1.80 9.46 22.70 0.21 -1.59 16 29 H 0.08 2.33 6.37 -2.39 -0.02 2.32 16 30 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 31 H 0.04 1.24 7.43 -2.38 -0.02 1.22 16 32 H 0.27 0.31 8.06 -2.91 -0.02 0.29 16 33 H 0.16 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.11 0.15 6.47 -2.39 -0.02 0.14 16 35 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.13 1.30 5.06 -2.38 -0.01 1.29 16 37 H 0.16 1.50 5.64 -2.91 -0.02 1.48 16 38 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 40 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 41 H 0.10 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -82.88 354.09 4.46 -78.42 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.08 Total: 8.13 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 7.68 Total: -11.83 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -5.06 Total: -92.88 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.21 Total: -6.50 kcal Total: -82.88 4.46 -78.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332594352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.592 kcal (2) G-P(sol) polarization free energy of solvation -82.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds