Wall clock time and date at job start Wed Apr 1 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99972 * 2 1 4 4 H 1.48509 * 109.47236 * 270.00188 * 3 2 1 5 5 H 1.48501 * 109.47115 * 29.99861 * 3 2 1 6 6 H 1.48491 * 109.47283 * 149.99687 * 3 2 1 7 7 C 1.37876 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99590 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00352 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47453 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99747 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00467 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99643 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.47016 * 180.02562 * 13 11 10 15 15 C 1.34234 * 116.99938 * 179.97438 * 14 13 11 16 16 O 1.20822 * 119.99973 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00068 * 179.97438 * 15 14 13 18 18 C 1.50697 * 109.47266 * 180.02562 * 17 15 14 19 19 C 1.35594 * 119.88322 * 94.72571 * 18 17 15 20 20 C 1.46404 * 118.53396 * 179.73764 * 19 18 17 21 21 C 1.39891 * 121.15334 * 180.23167 * 20 19 18 22 22 C 1.36601 * 119.71706 * 180.30262 * 21 20 19 23 23 C 1.38833 * 120.59321 * 0.02562 * 22 21 20 24 24 C 1.37812 * 120.68753 * 359.93361 * 23 22 21 25 25 C 1.39112 * 119.74644 * 0.09154 * 24 23 22 26 26 N 1.37866 * 120.97257 * 179.91110 * 25 24 23 27 27 H 0.96998 * 119.51601 * 0.02562 * 26 25 24 28 28 C 1.34449 * 120.95300 * 179.97438 * 26 25 24 29 29 O 1.21887 * 119.16941 * 180.02562 * 28 26 25 30 30 H 0.97004 * 120.00266 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47071 * 59.99453 * 9 7 2 32 32 H 1.09012 * 109.47009 * 300.00026 * 9 7 2 33 33 H 0.96994 * 119.99981 * 359.97438 * 10 9 7 34 34 H 1.08996 * 109.46943 * 60.00331 * 13 11 10 35 35 H 1.08999 * 109.47285 * 300.00471 * 13 11 10 36 36 H 1.09004 * 109.46932 * 300.00373 * 17 15 14 37 37 H 1.08997 * 109.47392 * 59.99712 * 17 15 14 38 38 H 1.07999 * 120.73284 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.13706 * 0.27814 * 21 20 19 40 40 H 1.08002 * 119.69808 * 180.02562 * 22 21 20 41 41 H 1.07993 * 119.65699 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.12570 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0025 12 8 0.5615 -5.1050 0.0017 13 6 2.7332 -6.0287 0.0032 14 8 2.0072 -7.2862 0.0033 15 6 2.7383 -8.4120 0.0034 16 8 3.9449 -8.3487 0.0038 17 6 2.0542 -9.7547 0.0041 18 6 3.0921 -10.8473 0.0046 19 6 3.4872 -11.4032 1.1766 20 6 4.4930 -12.4665 1.1423 21 6 4.9365 -13.0813 2.3180 22 6 5.8808 -14.0662 2.2524 23 6 6.4048 -14.4624 1.0293 24 6 5.9821 -13.8712 -0.1416 25 6 5.0218 -12.8657 -0.0996 26 7 4.5821 -12.2558 -1.2552 27 1 4.9474 -12.5323 -2.1102 28 6 3.6535 -11.2844 -1.2142 29 8 3.2879 -10.7677 -2.2559 30 1 -0.4851 0.8401 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 3.1567 -3.4354 0.0021 34 1 3.3597 -5.9705 0.8932 35 1 3.3599 -5.9715 -0.8867 36 1 1.4317 -9.8449 0.8944 37 1 1.4310 -9.8455 -0.8855 38 1 3.0657 -11.0722 2.1142 39 1 4.5344 -12.7783 3.2734 40 1 6.2227 -14.5410 3.1602 41 1 7.1510 -15.2423 0.9951 42 1 6.3956 -14.1868 -1.0881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046548821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:24 Heat of formation + Delta-G solvation = -116.104455 kcal Electronic energy + Delta-G solvation = -27819.319443 eV Core-core repulsion = 23536.509196 eV Total energy + Delta-G solvation = -4282.810247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81779 -40.47266 -39.13273 -38.64919 -36.45435 -35.86606 -35.15452 -34.22420 -32.39770 -32.01704 -30.19370 -29.47071 -28.15730 -26.51317 -24.49613 -23.52578 -23.23563 -22.55660 -21.06935 -19.90939 -19.00953 -18.33153 -17.85002 -17.78491 -17.36650 -16.64793 -16.28750 -16.15881 -15.76078 -15.45521 -15.30871 -15.01814 -14.95739 -14.68135 -14.37999 -14.13415 -13.78587 -13.57513 -13.21045 -13.14501 -12.98641 -12.41428 -12.35980 -11.97936 -11.95157 -11.80546 -11.71723 -11.45915 -11.00490 -10.93857 -10.90832 -10.65082 -10.54413 -10.51085 -10.33287 -9.42648 -9.16277 -9.08085 -8.76801 -8.47132 -7.96616 -6.18277 -4.25624 -0.06890 0.68674 1.28909 2.17329 2.33661 2.53193 2.76120 3.21011 3.24269 3.30330 3.32734 3.44162 3.88458 4.00362 4.03801 4.09753 4.29927 4.34671 4.47594 4.66111 4.68125 4.83560 4.90721 5.10683 5.12542 5.17835 5.20706 5.25633 5.28147 5.36737 5.38034 5.47921 5.66136 5.83134 5.90540 6.13126 6.27978 6.38840 6.57955 7.24583 7.33254 7.47693 7.60159 7.61261 7.72639 7.93454 8.52254 8.72912 8.98740 9.40706 10.91846 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.026388 B = 0.001646 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.853268 B =17009.524271 C =17243.181054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.049 3.951 14 O -0.327 6.327 15 C 0.466 3.534 16 O -0.508 6.508 17 C -0.056 4.056 18 C -0.171 4.171 19 C -0.002 4.002 20 C -0.130 4.130 21 C -0.052 4.052 22 C -0.153 4.153 23 C -0.064 4.064 24 C -0.165 4.165 25 C 0.188 3.812 26 N -0.630 5.630 27 H 0.416 0.584 28 C 0.547 3.453 29 O -0.529 6.529 30 H 0.266 0.734 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.393 0.607 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.053 -33.026 4.837 35.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.411 6.411 13 C -0.028 4.028 14 O -0.242 6.242 15 C 0.309 3.691 16 O -0.396 6.396 17 C -0.094 4.094 18 C -0.174 4.174 19 C -0.022 4.022 20 C -0.133 4.133 21 C -0.071 4.071 22 C -0.172 4.172 23 C -0.083 4.083 24 C -0.186 4.186 25 C 0.085 3.915 26 N -0.267 5.267 27 H 0.255 0.745 28 C 0.342 3.658 29 O -0.408 6.408 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.226 0.774 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.022 -32.547 4.329 34.966 hybrid contribution 1.366 0.960 -0.379 1.712 sum 13.388 -31.587 3.950 34.534 Atomic orbital electron populations 1.69973 1.06109 1.27388 1.48700 1.24951 0.94933 0.99478 0.94619 0.86387 0.79585 0.82521 0.78248 1.20433 1.20976 1.19744 1.21214 0.93341 0.90325 1.53489 0.91772 1.19177 0.88179 0.81535 0.98046 1.46360 1.11496 1.05360 1.72493 1.19889 0.89120 0.83980 0.78724 1.90704 1.16324 1.84553 1.49547 1.22860 0.94389 0.81043 1.04540 1.86550 1.40330 1.13925 1.83418 1.23505 0.86547 0.86601 0.72449 1.90662 1.15571 1.87927 1.45425 1.19975 0.96343 0.85307 1.07747 1.20149 1.02879 1.01560 0.92821 1.22570 0.90817 0.90590 0.98221 1.18615 1.01602 1.00788 0.92247 1.20920 0.95161 0.94139 0.96847 1.20848 0.98917 0.99177 0.98247 1.21144 0.97649 0.97841 0.91678 1.20761 0.99535 0.98313 0.99987 1.18002 0.94399 0.93186 0.85893 1.43391 1.38951 1.35197 1.09206 0.74536 1.16732 0.79302 0.79157 0.90566 1.90980 1.60455 1.54800 1.34582 0.92384 0.95233 0.95235 0.77444 0.88557 0.88551 0.85909 0.85519 0.83366 0.84566 0.85206 0.85054 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.65 5.43 -5.20 -0.03 6.63 16 10 N -0.71 -14.96 5.55 -61.47 -0.34 -15.31 16 11 C 0.50 10.32 7.91 -10.98 -0.09 10.24 16 12 O -0.53 -13.33 16.50 -14.10 -0.23 -13.56 16 13 C 0.05 0.79 5.94 36.01 0.21 1.00 16 14 O -0.33 -5.40 9.75 -45.92 -0.45 -5.85 16 15 C 0.47 6.72 7.95 36.01 0.29 7.01 16 16 O -0.51 -8.30 15.78 -18.75 -0.30 -8.60 16 17 C -0.06 -0.59 5.64 -29.04 -0.16 -0.75 16 18 C -0.17 -1.77 4.38 -104.47 -0.46 -2.23 16 19 C 0.00 -0.01 9.70 -37.24 -0.36 -0.37 16 20 C -0.13 -0.94 5.87 -105.04 -0.62 -1.56 16 21 C -0.05 -0.26 9.79 -39.55 -0.39 -0.65 16 22 C -0.15 -0.64 9.97 -39.95 -0.40 -1.03 16 23 C -0.06 -0.26 10.01 -39.52 -0.40 -0.66 16 24 C -0.17 -0.85 9.92 -39.41 -0.39 -1.24 16 25 C 0.19 1.40 6.65 -83.87 -0.56 0.85 16 26 N -0.63 -5.53 5.30 -12.61 -0.07 -5.59 16 27 H 0.42 2.79 8.77 -40.82 -0.36 2.43 16 28 C 0.55 6.58 7.65 -15.31 -0.12 6.47 16 29 O -0.53 -8.24 17.00 5.02 0.09 -8.15 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 34 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.10 1.41 8.13 -51.93 -0.42 0.99 16 36 H 0.12 0.85 8.04 -51.93 -0.42 0.43 16 37 H 0.13 1.34 7.71 -51.93 -0.40 0.94 16 38 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 40 H 0.13 0.27 8.06 -52.49 -0.42 -0.16 16 41 H 0.13 0.23 8.06 -52.49 -0.42 -0.20 16 42 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -38.34 377.16 -8.63 -46.97 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.85 Total: 3.58 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -3.88 Total: 10.27 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.33 Total: -46.18 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.89 Total: -36.16 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.34 -8.63 -46.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046548821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.135 kcal (2) G-P(sol) polarization free energy of solvation -38.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds