Wall clock time and date at job start Wed Apr 1 2020 03:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35132 * 125.61564 * 2 1 4 4 C 1.40368 * 107.11345 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.70805 * 359.97438 * 4 3 2 6 6 C 1.46657 * 125.98821 * 179.97438 * 5 4 3 7 7 O 1.21695 * 119.99831 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99860 * 179.97438 * 6 5 4 9 9 N 1.40098 * 119.99786 * 180.02562 * 8 6 5 10 10 C 1.34775 * 120.00203 * 179.97438 * 9 8 6 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 9 8 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38112 * 119.92511 * 359.40251 * 26 16 15 28 28 O 1.33926 * 125.61541 * 180.30500 * 2 1 3 29 29 H 1.09000 * 109.47006 * 89.99981 * 1 2 3 30 30 H 1.08995 * 109.47143 * 209.99919 * 1 2 3 31 31 H 1.08999 * 109.46965 * 330.00160 * 1 2 3 32 32 H 1.08002 * 126.44310 * 0.02562 * 3 2 1 33 33 H 1.07999 * 126.64599 * 179.97438 * 4 3 2 34 34 H 0.97001 * 120.00585 * 359.97438 * 8 6 5 35 35 H 0.97005 * 120.00193 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 37 37 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 38 38 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 39 39 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 42 42 H 1.08003 * 119.96174 * 180.31972 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7414 -1.6102 -0.0013 7 8 5.8680 -1.1500 -0.0020 8 7 4.5589 -2.9455 -0.0004 9 7 5.6662 -3.8038 -0.0008 10 6 5.4837 -5.1392 0.0006 11 8 4.3609 -5.5978 0.0017 12 6 6.6748 -6.0625 -0.0004 13 6 6.2014 -7.4931 0.0009 14 6 5.9831 -8.1489 -1.1970 15 6 5.5497 -9.4601 -1.1992 16 6 5.3325 -10.1201 0.0033 17 8 4.9070 -11.4092 0.0044 18 6 4.8243 -12.0275 -1.1908 19 1 5.0119 -11.4743 -2.0992 20 6 4.4983 -13.3738 -1.2538 21 7 4.2703 -14.0479 -0.1473 22 14 4.3845 -14.2307 -2.9097 23 1 5.6954 -14.1461 -3.6021 24 1 4.0241 -15.6568 -2.7055 25 1 3.3437 -13.5705 -3.7382 26 6 5.5465 -9.4569 1.2046 27 6 5.9862 -8.1477 1.2001 28 8 2.2869 -1.0887 -0.0058 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9613 2.1260 0.0004 33 1 4.5114 1.2703 -0.0011 34 1 3.6609 -3.3124 0.0012 35 1 6.5642 -3.4370 -0.0013 36 1 7.2780 -5.8782 0.8886 37 1 7.2755 -5.8797 -0.8914 38 1 6.1526 -7.6352 -2.1318 39 1 5.3799 -9.9717 -2.1350 40 1 4.0419 -14.9895 -0.1914 41 1 5.3742 -9.9661 2.1413 42 1 6.1578 -7.6331 2.1340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084284635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:35 Heat of formation + Delta-G solvation = -23.082782 kcal Electronic energy + Delta-G solvation = -27588.065045 eV Core-core repulsion = 23309.288521 eV Total energy + Delta-G solvation = -4278.776524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.18776 -40.52062 -39.36449 -38.69264 -36.59674 -35.54949 -33.80575 -32.76565 -32.50206 -31.98359 -30.79006 -30.15317 -27.75354 -26.49241 -25.11462 -23.14429 -22.14607 -21.98503 -21.77735 -20.97061 -20.23919 -18.75493 -18.10480 -17.97227 -16.99706 -16.93742 -16.78385 -15.75734 -15.75682 -15.08436 -14.95997 -14.67866 -14.45753 -14.27820 -13.96094 -13.75503 -13.67039 -13.51101 -13.49931 -13.46051 -13.44917 -12.71798 -12.62211 -12.44456 -11.99138 -11.63414 -11.44449 -11.28013 -11.02119 -10.86023 -10.77956 -10.64991 -10.50714 -10.43673 -10.08033 -9.33204 -9.09142 -8.82049 -8.58532 -8.15581 -7.18380 -6.44423 -4.03000 0.53962 1.41962 1.82902 2.18846 2.25124 2.34026 2.42699 2.77446 3.13908 3.14711 3.17610 3.69981 3.97405 4.10603 4.35825 4.42659 4.55620 4.80082 4.85324 4.91254 5.08690 5.10207 5.15273 5.18410 5.21040 5.30548 5.35953 5.48886 5.59764 5.71520 5.83708 5.88603 6.20622 6.22577 6.29656 6.41278 6.57126 6.70128 6.90900 7.04895 7.21695 7.25959 7.35417 7.44889 7.50496 7.82988 8.00615 8.14552 9.00992 9.71117 10.73435 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.001760 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.349300 B =15907.227689 C =16740.802791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.030 3.970 3 C -0.226 4.226 4 C -0.104 4.104 5 C -0.080 4.080 6 C 0.605 3.395 7 O -0.525 6.525 8 N -0.511 5.511 9 N -0.531 5.531 10 C 0.511 3.489 11 O -0.516 6.516 12 C -0.066 4.066 13 C -0.176 4.176 14 C -0.053 4.053 15 C -0.233 4.233 16 C 0.159 3.841 17 O -0.176 6.176 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.192 4.192 27 C -0.057 4.057 28 O -0.162 6.162 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.437 0.563 35 H 0.431 0.569 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.271 0.729 41 H 0.117 0.883 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 28.791 -0.171 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.023 4.023 3 C -0.245 4.245 4 C -0.125 4.125 5 C -0.133 4.133 6 C 0.392 3.608 7 O -0.402 6.402 8 N -0.257 5.257 9 N -0.283 5.283 10 C 0.298 3.702 11 O -0.387 6.387 12 C -0.107 4.107 13 C -0.178 4.178 14 C -0.072 4.072 15 C -0.253 4.253 16 C 0.105 3.895 17 O -0.079 6.079 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.211 4.211 27 C -0.075 4.075 28 O -0.058 6.058 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.280 0.720 35 H 0.273 0.727 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.135 0.865 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.140 27.990 0.075 28.072 hybrid contribution -0.075 -0.137 -0.898 0.912 sum -2.216 27.853 -0.823 27.953 Atomic orbital electron populations 1.20481 0.84266 1.04819 1.04282 1.22925 0.94440 0.83906 1.01031 1.21625 0.92150 0.99987 1.10743 1.21940 0.98858 0.92454 0.99240 1.21489 0.81515 0.94093 1.16205 1.16442 0.86913 0.79726 0.77761 1.90902 1.21756 1.75608 1.51921 1.44691 1.04616 1.01948 1.74416 1.45317 1.02478 1.02120 1.78366 1.21650 0.93115 0.79673 0.75761 1.90783 1.25180 1.75150 1.47624 1.20330 0.94015 0.91563 1.04785 1.18545 1.12185 0.93165 0.93873 1.20520 0.96570 0.93932 0.96156 1.21105 1.09930 0.95801 0.98429 1.19405 0.90891 0.85957 0.93294 1.83975 1.71822 1.19154 1.32996 1.21289 1.49466 0.92934 0.83118 0.89081 1.25296 0.96522 0.95420 0.99290 1.70028 1.43202 1.09442 1.27018 0.85778 0.79111 0.78370 0.80151 1.19492 1.20277 1.19502 1.20156 1.09408 0.95323 0.96260 1.20414 0.97250 0.93550 0.96291 1.84037 1.15798 1.35132 1.70847 0.89271 0.89821 0.88707 0.82342 0.81915 0.72048 0.72688 0.88131 0.88173 0.87690 0.85524 0.91960 0.86470 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.41 36.01 0.37 0.08 16 2 C 0.03 0.21 7.31 -35.41 -0.26 -0.05 16 3 C -0.23 -1.52 10.77 -39.89 -0.43 -1.95 16 4 C -0.10 -0.88 10.62 -39.39 -0.42 -1.30 16 5 C -0.08 -0.81 7.13 -36.80 -0.26 -1.07 16 6 C 0.61 6.90 7.90 -12.86 -0.10 6.80 16 7 O -0.52 -6.91 16.70 5.19 0.09 -6.82 16 8 N -0.51 -5.80 6.26 30.26 0.19 -5.61 16 9 N -0.53 -5.83 6.26 31.22 0.20 -5.64 16 10 C 0.51 6.78 7.94 -10.98 -0.09 6.69 16 11 O -0.52 -9.13 15.87 5.55 0.09 -9.04 16 12 C -0.07 -0.77 5.83 -29.04 -0.17 -0.93 16 13 C -0.18 -2.95 4.38 -104.58 -0.46 -3.41 16 14 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 15 C -0.23 -5.16 9.17 -39.39 -0.36 -5.52 16 16 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 17 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 18 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 19 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 22 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 27 C -0.06 -1.02 9.69 -39.60 -0.38 -1.40 16 28 O -0.16 -1.54 10.40 5.00 0.05 -1.48 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.44 4.96 7.76 -182.60 -1.42 3.55 16 35 H 0.43 3.82 8.00 -182.59 -1.46 2.36 16 36 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -35.93 378.05 -8.15 -44.08 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.80 Total: 7.07 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -3.40 Total: -14.10 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 1.14 Total: -35.91 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.23 Total: -22.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.93 -8.15 -44.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084284635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.998 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds