Wall clock time and date at job start Wed Apr 1 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34772 * 117.00405 * 2 1 4 4 O 1.21538 * 119.99532 * 359.97438 * 3 2 1 5 5 C 1.47226 * 119.99917 * 179.97438 * 3 2 1 6 6 C 1.36497 * 127.20505 * 0.02850 * 5 3 2 7 7 O 1.33625 * 108.38623 * 179.97438 * 6 5 3 8 8 C 1.34224 * 110.92095 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.42146 * 179.97438 * 8 7 6 10 10 O 1.45187 * 109.47223 * 270.02337 * 9 8 7 11 11 C 1.34240 * 117.00201 * 180.02562 * 10 9 8 12 12 O 1.20823 * 119.99516 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00335 * 180.02562 * 11 10 9 14 14 C 1.50690 * 109.47279 * 179.97438 * 13 11 10 15 15 C 1.37639 * 120.13048 * 264.99867 * 14 13 11 16 16 C 1.38613 * 120.25178 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.49902 * 0.02562 * 16 15 14 18 18 C 1.37603 * 120.25206 * 0.02661 * 17 16 15 19 19 C 1.40696 * 120.13010 * 84.72266 * 14 13 11 20 20 C 1.41400 * 120.24257 * 359.97438 * 19 14 13 21 21 H 1.07999 * 119.99957 * 333.89495 * 20 19 14 22 22 C 1.39950 * 120.00303 * 153.89054 * 20 19 14 23 23 N 1.30830 * 119.99772 * 343.72331 * 22 20 19 24 24 Si 1.86793 * 120.00140 * 163.71636 * 22 20 19 25 25 H 1.48504 * 109.47232 * 60.00339 * 24 22 20 26 26 H 1.48499 * 109.47277 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47410 * 300.00755 * 24 22 20 28 28 C 1.34149 * 109.14475 * 359.97438 * 8 7 6 29 29 H 1.09000 * 109.46521 * 59.99877 * 1 2 3 30 30 H 1.08995 * 109.47458 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47192 * 300.00238 * 1 2 3 32 32 H 1.08005 * 125.80539 * 359.97438 * 6 5 3 33 33 H 1.09000 * 109.47062 * 30.03226 * 9 8 7 34 34 H 1.09004 * 109.46688 * 150.02222 * 9 8 7 35 35 H 1.09000 * 109.46902 * 299.99954 * 13 11 10 36 36 H 1.09001 * 109.47250 * 59.99255 * 13 11 10 37 37 H 1.08002 * 119.87462 * 0.02562 * 15 14 13 38 38 H 1.08000 * 119.75004 * 180.02562 * 16 15 14 39 39 H 1.08005 * 119.87499 * 179.97438 * 17 16 15 40 40 H 1.07995 * 120.12995 * 179.97438 * 18 17 16 41 41 H 0.96999 * 119.99453 * 179.97438 * 23 22 20 42 42 H 1.08006 * 127.02366 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5342 1.2777 0.0006 6 6 4.4153 0.2352 0.0006 7 8 5.6558 0.7317 0.0006 8 6 5.6349 2.0738 0.0001 9 6 6.8492 2.9663 0.0005 10 8 7.2387 3.2530 1.3695 11 6 8.3106 4.0416 1.5457 12 8 8.9035 4.4781 0.5877 13 6 8.7746 4.3824 2.9384 14 6 9.9871 5.2737 2.8600 15 6 11.2498 4.7300 2.9275 16 6 12.3668 5.5475 2.8550 17 6 12.2267 6.9197 2.7145 18 6 10.9742 7.4853 2.6460 19 6 9.8330 6.6643 2.7116 20 6 8.5409 7.2334 2.6347 21 1 7.7119 6.6439 2.2720 22 6 8.3363 8.5607 3.0286 23 7 9.2360 9.1738 3.7541 24 14 6.7787 9.4568 2.5186 25 1 5.5954 8.7371 3.0545 26 1 6.8039 10.8398 3.0587 27 1 6.6986 9.5060 1.0366 28 6 4.3609 2.4939 -0.0009 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.1541 -0.8128 0.0006 33 1 7.6692 2.4643 -0.5131 34 1 6.6151 3.8985 -0.5135 35 1 7.9765 4.9000 3.4707 36 1 9.0312 3.4662 3.4703 37 1 11.3706 3.6623 3.0365 38 1 13.3538 5.1122 2.9084 39 1 13.1040 7.5472 2.6595 40 1 10.8673 8.5544 2.5369 41 1 9.0943 10.0938 4.0268 42 1 4.0133 3.5165 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777161663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:00 Heat of formation + Delta-G solvation = -135.087250 kcal Electronic energy + Delta-G solvation = -28308.881182 eV Core-core repulsion = 23992.955029 eV Total energy + Delta-G solvation = -4315.926153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.97123 -40.42573 -39.99630 -37.68875 -36.71112 -36.02591 -33.67887 -33.39202 -32.11058 -31.52600 -29.52459 -28.34094 -27.43038 -26.11443 -25.01310 -24.30458 -21.58294 -21.29270 -20.97424 -20.51736 -19.41468 -18.17288 -17.42248 -17.31602 -17.20940 -16.77028 -16.47164 -16.18095 -16.05958 -15.79443 -15.30887 -14.53367 -14.36293 -13.93560 -13.66373 -13.61501 -13.59799 -13.24172 -13.22173 -12.64564 -12.60129 -12.38565 -12.16210 -11.81024 -11.60205 -11.25814 -11.17478 -11.13447 -11.02640 -10.95618 -10.75912 -10.49363 -10.44742 -10.23876 -9.92186 -9.55073 -9.44765 -9.19911 -9.07642 -7.39854 -7.36935 -6.78857 -4.41328 0.80020 1.43553 2.21853 2.40565 2.70560 2.75779 2.84058 2.90020 3.05507 3.08928 3.24800 3.44991 3.91121 4.17723 4.24218 4.59763 4.62044 4.73614 4.81986 4.94478 5.02575 5.14464 5.20171 5.35128 5.46752 5.54589 5.71558 5.90365 5.92441 5.98873 6.00932 6.23262 6.36894 6.45846 6.62470 6.67423 6.83089 7.03221 7.23350 7.35576 7.43065 7.57894 7.84979 7.99111 8.07095 8.24424 8.34058 8.58646 8.84648 8.94190 10.14997 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.002475 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.305885 B =11312.094803 C =13103.082630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.539 3.461 4 O -0.501 6.501 5 C -0.236 4.236 6 C 0.067 3.933 7 O -0.162 6.162 8 C -0.009 4.009 9 C 0.144 3.856 10 O -0.363 6.363 11 C 0.462 3.538 12 O -0.488 6.488 13 C -0.040 4.040 14 C -0.197 4.197 15 C -0.076 4.076 16 C -0.240 4.240 17 C -0.103 4.103 18 C -0.158 4.158 19 C 0.131 3.869 20 C -0.458 4.458 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.791 5.791 24 Si 0.904 3.096 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.263 1.263 28 C -0.127 4.127 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.224 0.776 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.282 0.718 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 -16.333 -5.673 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.384 3.616 4 O -0.390 6.390 5 C -0.238 4.238 6 C -0.004 4.004 7 O -0.056 6.056 8 C -0.057 4.057 9 C 0.070 3.930 10 O -0.282 6.282 11 C 0.305 3.695 12 O -0.373 6.373 13 C -0.077 4.077 14 C -0.199 4.199 15 C -0.094 4.094 16 C -0.259 4.259 17 C -0.122 4.122 18 C -0.177 4.177 19 C 0.128 3.872 20 C -0.487 4.487 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.416 5.416 24 Si 0.728 3.272 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.188 1.188 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.240 0.760 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.123 -15.815 -5.870 20.773 hybrid contribution -1.123 0.583 -0.338 1.310 sum -13.247 -15.231 -6.207 21.119 Atomic orbital electron populations 1.23293 0.75580 1.03822 1.02850 1.86520 1.23885 1.32543 1.84746 1.19981 0.87462 0.81507 0.72698 1.90876 1.66439 1.35953 1.45721 1.20483 0.90491 0.94619 1.18249 1.24752 0.80174 0.99465 0.95994 1.83794 1.30223 1.21600 1.70016 1.21770 0.95961 0.80174 1.07807 1.21007 0.91883 0.96573 0.83502 1.86625 1.47420 1.64794 1.29397 1.24625 0.76390 0.74280 0.94251 1.90660 1.54550 1.49165 1.42926 1.20005 0.98993 0.99930 0.88769 1.19037 0.91163 0.93839 1.15863 1.20326 0.92625 0.96802 0.99643 1.20319 0.96214 0.93900 1.15516 1.20709 0.96555 0.94305 1.00632 1.21309 0.91126 0.99951 1.05321 1.17349 0.93330 0.89846 0.86663 1.19459 0.94926 0.96176 1.38186 0.90817 1.25887 0.98082 0.97565 0.92479 1.69806 1.34331 1.12658 1.24834 0.86433 0.81908 0.78563 0.80311 1.18852 1.20234 1.18792 1.22566 0.90184 0.99079 1.02748 0.91724 0.87843 0.91662 0.75972 0.89279 0.87576 0.87271 0.89200 0.89510 0.89486 0.89436 0.86400 0.90743 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.36 -3.25 10.42 -40.69 -0.42 -3.68 16 3 C 0.54 6.29 7.95 34.38 0.27 6.56 16 4 O -0.50 -7.34 16.78 -19.30 -0.32 -7.66 16 5 C -0.24 -2.61 6.31 -103.30 -0.65 -3.26 16 6 C 0.07 0.58 11.94 30.10 0.36 0.94 16 7 O -0.16 -1.76 10.52 7.70 0.08 -1.68 16 8 C -0.01 -0.11 6.92 -35.75 -0.25 -0.36 16 9 C 0.14 1.94 5.98 36.01 0.22 2.15 16 10 O -0.36 -5.97 10.20 -39.29 -0.40 -6.37 16 11 C 0.46 8.92 7.57 36.00 0.27 9.20 16 12 O -0.49 -10.88 15.78 -18.75 -0.30 -11.18 16 13 C -0.04 -0.77 5.29 -29.04 -0.15 -0.92 16 14 C -0.20 -4.62 4.43 -103.92 -0.46 -5.08 16 15 C -0.08 -1.69 9.66 -39.66 -0.38 -2.07 16 16 C -0.24 -5.42 10.05 -39.29 -0.39 -5.81 16 17 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 18 C -0.16 -4.11 8.69 -38.87 -0.34 -4.45 16 19 C 0.13 3.40 5.56 -106.82 -0.59 2.81 16 20 C -0.46 -11.78 8.14 -37.74 -0.31 -12.09 16 21 H 0.07 1.83 6.67 -52.49 -0.35 1.48 16 22 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 23 N -0.79 -20.05 10.96 55.55 0.61 -19.44 16 24 Si 0.90 18.65 29.59 -169.99 -5.03 13.62 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 28 C -0.13 -1.54 10.90 -37.45 -0.41 -1.95 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.22 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.09 1.12 8.13 -51.93 -0.42 0.69 16 34 H 0.11 1.36 8.13 -51.93 -0.42 0.93 16 35 H 0.11 2.11 7.08 -51.93 -0.37 1.74 16 36 H 0.09 1.46 8.05 -51.93 -0.42 1.05 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.12 3.15 6.20 -52.49 -0.33 2.83 16 41 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 42 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -31.96 377.98 -7.15 -39.11 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.82 Total: 5.63 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.24 Total: -14.05 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.36 Total: -30.56 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.96 -7.15 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777161663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.981 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds