Wall clock time and date at job start Wed Apr 1 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35822 * 116.99990 * 2 1 4 4 C 1.38016 * 120.18095 * 0.19491 * 3 2 1 5 5 C 1.38810 * 120.41739 * 180.29974 * 4 3 2 6 6 C 1.37906 * 120.68972 * 359.46025 * 5 4 3 7 7 F 1.35102 * 119.97902 * 180.27868 * 6 5 4 8 8 C 1.39316 * 120.03851 * 0.29887 * 6 5 4 9 9 N 1.37646 * 133.06340 * 179.97438 * 8 6 5 10 10 H 0.96997 * 125.63352 * 0.02859 * 9 8 6 11 11 C 1.38248 * 108.72465 * 180.02562 * 9 8 6 12 12 C 1.46913 * 125.45279 * 179.97438 * 11 9 8 13 13 O 1.21685 * 120.00107 * 180.02562 * 12 11 9 14 14 N 1.34776 * 119.99767 * 0.02785 * 12 11 9 15 15 C 1.40517 * 119.99773 * 179.97438 * 14 12 11 16 16 C 1.40665 * 126.08821 * 0.02562 * 15 14 12 17 17 N 1.30905 * 108.38917 * 179.97438 * 16 15 14 18 18 N 1.40066 * 108.41312 * 0.02562 * 17 16 15 19 19 C 1.37310 * 126.06815 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99885 * 179.97438 * 19 18 17 21 21 C 1.38987 * 120.00015 * 359.96814 * 19 18 17 22 22 N 1.31302 * 120.00022 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00167 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46886 * 60.00175 * 23 21 19 25 25 H 1.48504 * 109.47003 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47140 * 300.00298 * 23 21 19 27 27 C 1.35703 * 126.08170 * 179.71801 * 15 14 12 28 28 C 1.35943 * 109.09657 * 0.02562 * 11 9 8 29 29 C 1.40583 * 120.18078 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47167 * 299.99882 * 1 2 3 32 32 H 1.09008 * 109.46920 * 59.99688 * 1 2 3 33 33 H 1.07992 * 119.79226 * 0.03341 * 4 3 2 34 34 H 1.08002 * 119.65610 * 179.74252 * 5 4 3 35 35 H 0.96998 * 120.00273 * 0.02562 * 14 12 11 36 36 H 1.08002 * 125.80607 * 359.97438 * 16 15 14 37 37 H 0.96996 * 119.99872 * 179.97438 * 22 21 19 38 38 H 1.08001 * 126.25055 * 0.02562 * 27 15 14 39 39 H 1.07999 * 126.11938 * 179.97438 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2976 2.3701 0.0041 5 6 1.9227 3.6095 -0.0022 6 6 3.2985 3.7039 -0.0014 7 9 3.8918 4.9177 -0.0018 8 6 4.0768 2.5485 -0.0005 9 7 5.4360 2.3309 0.0000 10 1 6.1186 3.0200 0.0002 11 6 5.6672 0.9679 0.0003 12 6 6.9896 0.3279 0.0002 13 8 7.0782 -0.8858 0.0000 14 7 8.1046 1.0850 0.0005 15 6 9.3695 0.4729 0.0010 16 6 9.6201 -0.9113 0.0008 17 7 10.9160 -1.0963 0.0009 18 7 11.5418 0.1568 0.0018 19 6 12.8960 0.3841 0.0017 20 1 13.2736 1.3959 0.0020 21 6 13.7806 -0.6879 0.0013 22 7 13.3214 -1.9180 0.0005 23 14 15.6228 -0.3787 0.0018 24 1 15.9948 0.3929 1.2149 25 1 16.3427 -1.6776 0.0006 26 1 15.9954 0.3943 -1.2102 27 6 10.5666 1.1119 -0.0040 28 6 4.4751 0.3145 -0.0006 29 6 3.4493 1.2882 -0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2192 2.3130 0.0078 34 1 1.3253 4.5092 -0.0031 35 1 8.0340 2.0524 0.0011 36 1 8.8708 -1.6891 0.0006 37 1 13.9388 -2.6662 -0.0002 38 1 10.7198 2.1810 -0.0088 39 1 4.3361 -0.7565 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793290586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:23 Heat of formation + Delta-G solvation = 34.087728 kcal Electronic energy + Delta-G solvation = -28018.706896 eV Core-core repulsion = 23651.241917 eV Total energy + Delta-G solvation = -4367.464979 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.107 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.00367 -41.81768 -40.00349 -39.44679 -38.35461 -36.14147 -34.42257 -33.25378 -31.85270 -30.42492 -29.90949 -28.87018 -27.97637 -27.35489 -25.19027 -23.78443 -22.47520 -21.73506 -20.97261 -20.19460 -19.53545 -19.07077 -18.11716 -17.42719 -17.08445 -16.62217 -16.29185 -16.10619 -15.71600 -15.51170 -15.24674 -14.99225 -14.87481 -14.40868 -14.02826 -13.91399 -13.71303 -13.30603 -13.14944 -13.09278 -12.87155 -12.70406 -12.44903 -12.25785 -11.72145 -11.52125 -11.41694 -11.28286 -11.03072 -10.98196 -10.58999 -10.30434 -9.69619 -9.54827 -9.23414 -8.87868 -8.69661 -8.12368 -7.66478 -6.78933 -6.60303 -4.28052 0.51014 1.11110 1.91228 2.53820 2.92895 2.95020 3.02015 3.06646 3.25397 3.36437 3.40427 3.71147 3.82484 4.02605 4.36049 4.37337 4.50250 4.62748 4.69864 4.82454 4.82989 4.95416 4.97651 5.01922 5.16407 5.18654 5.45888 5.75468 5.80975 5.87325 6.11243 6.20163 6.31072 6.36139 6.54100 6.79357 6.87847 6.98789 7.04442 7.08858 7.16343 7.79568 8.01684 8.18386 8.50106 8.69738 9.31120 9.60161 10.35427 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.002065 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.160322 B =13555.521032 C =14654.534483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.183 3.817 4 C -0.230 4.230 5 C -0.083 4.083 6 C 0.045 3.955 7 F -0.144 7.144 8 C 0.113 3.887 9 N -0.568 5.568 10 H 0.424 0.576 11 C 0.035 3.965 12 C 0.564 3.436 13 O -0.513 6.513 14 N -0.616 5.616 15 C -0.065 4.065 16 C -0.028 4.028 17 N -0.259 5.259 18 N -0.139 5.139 19 C -0.323 4.323 20 H 0.117 0.883 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.083 4.083 28 C -0.094 4.094 29 C -0.115 4.115 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.392 0.608 36 H 0.178 0.822 37 H 0.276 0.724 38 H 0.146 0.854 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.739 10.351 -0.006 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.136 3.864 4 C -0.250 4.250 5 C -0.104 4.104 6 C 0.023 3.977 7 F -0.123 7.123 8 C 0.000 4.000 9 N -0.172 5.172 10 H 0.263 0.737 11 C -0.075 4.075 12 C 0.349 3.651 13 O -0.389 6.389 14 N -0.257 5.257 15 C -0.170 4.170 16 C -0.204 4.204 17 N -0.090 5.090 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.134 0.866 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.234 4.234 28 C -0.120 4.120 29 C -0.120 4.120 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.224 0.776 36 H 0.194 0.806 37 H 0.087 0.913 38 H 0.163 0.837 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.338 8.226 -0.003 22.868 hybrid contribution 0.241 2.221 -0.003 2.234 sum -21.097 10.447 -0.006 23.542 Atomic orbital electron populations 1.23140 0.77997 1.04303 1.01547 1.86100 1.21574 1.26486 1.87548 1.18440 0.89639 0.84584 0.93703 1.20660 1.00092 0.90728 1.13528 1.20526 0.91195 0.98708 0.99928 1.16450 0.90258 0.77468 1.13547 1.91471 1.84170 1.41756 1.94871 1.17879 0.83645 0.93720 1.04714 1.41990 1.05198 1.06968 1.63079 0.73742 1.20457 0.95568 0.81545 1.09902 1.16884 0.81615 0.86789 0.79794 1.90768 1.85276 1.12579 1.50236 1.42349 1.04203 1.08407 1.70724 1.17202 0.82445 0.92701 1.24654 1.24141 0.94641 0.94061 1.07510 1.78281 1.04124 1.00881 1.25753 1.44566 1.04634 1.02766 1.38649 1.19848 0.76948 0.95253 1.53445 0.86581 1.25662 1.01485 0.94591 0.95432 1.70204 1.36059 0.98335 1.34771 0.85877 0.80197 0.78477 0.79503 1.19120 1.20073 1.19125 1.21241 0.87528 0.94622 1.20033 1.20793 0.88180 0.99829 1.03197 1.17150 0.90588 0.92296 1.11991 0.87965 0.92358 0.92363 0.84408 0.84119 0.77564 0.80554 0.91286 0.83655 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.06 10.50 -19.18 -0.20 -3.26 16 3 C 0.18 1.97 6.73 -38.78 -0.26 1.71 16 4 C -0.23 -1.93 9.03 -39.45 -0.36 -2.28 16 5 C -0.08 -0.72 9.98 -39.49 -0.39 -1.11 16 6 C 0.04 0.48 7.31 -39.30 -0.29 0.20 16 7 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 8 C 0.11 1.36 7.23 -83.89 -0.61 0.75 16 9 N -0.57 -6.65 6.09 -7.31 -0.04 -6.69 16 10 H 0.42 3.87 8.12 -40.82 -0.33 3.54 16 11 C 0.03 0.50 6.97 -82.28 -0.57 -0.07 16 12 C 0.56 10.05 7.76 -12.75 -0.10 9.96 16 13 O -0.51 -10.99 13.98 5.20 0.07 -10.91 16 14 N -0.62 -10.79 5.46 -11.11 -0.06 -10.85 16 15 C -0.06 -1.47 6.90 -83.86 -0.58 -2.04 16 16 C -0.03 -0.73 10.85 -17.03 -0.18 -0.92 16 17 N -0.26 -7.48 10.39 30.80 0.32 -7.16 16 18 N -0.14 -3.78 3.74 -11.41 -0.04 -3.82 16 19 C -0.32 -8.43 10.25 -14.82 -0.15 -8.58 16 20 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.26 11.81 55.50 0.66 -20.61 16 23 Si 0.94 18.71 29.55 -169.99 -5.02 13.69 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.08 -1.92 11.50 -16.38 -0.19 -2.11 16 28 C -0.09 -1.32 10.52 -39.19 -0.41 -1.73 16 29 C -0.11 -1.45 6.11 -106.83 -0.65 -2.10 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 32 H 0.06 0.24 7.67 -51.92 -0.40 -0.16 16 33 H 0.14 0.75 6.27 -52.49 -0.33 0.42 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.39 5.21 7.88 -40.82 -0.32 4.88 16 36 H 0.18 4.54 5.91 -52.49 -0.31 4.23 16 37 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16 39 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -34.18 348.51 -6.21 -40.38 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.32 Total: 11.67 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.85 Total: -6.13 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.83 Total: -49.13 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.13 Total: -14.17 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.18 -6.21 -40.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793290586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.471 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds