Wall clock time and date at job start Wed Apr 1 2020 03:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47218 * 269.99752 * 3 2 1 5 5 H 1.48498 * 109.47506 * 30.00141 * 3 2 1 6 6 H 1.48507 * 109.47154 * 150.00036 * 3 2 1 7 7 C 1.38794 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00351 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00054 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47193 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99851 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99796 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99938 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.88488 * 31.12191 * 14 13 11 16 16 C 1.55125 * 111.19889 * 267.19018 * 14 13 11 17 17 N 1.47423 * 104.72142 * 279.19182 * 16 14 13 18 18 C 1.34773 * 125.64963 * 155.81397 * 17 16 14 19 19 O 1.21277 * 120.00282 * 359.71461 * 18 17 16 20 20 C 1.50708 * 120.00240 * 179.71510 * 18 17 16 21 21 H 1.08999 * 109.86556 * 56.00956 * 20 18 17 22 22 C 1.54098 * 109.87689 * 295.00307 * 20 18 17 23 23 C 1.54813 * 104.30472 * 238.32694 * 22 20 18 24 24 C 1.55227 * 101.98357 * 339.26359 * 23 22 20 25 25 O 1.43744 * 110.00380 * 177.09532 * 20 18 17 26 26 C 1.47027 * 108.70353 * 335.55007 * 17 16 14 27 27 C 1.54326 * 107.26845 * 1.28754 * 26 17 16 28 28 H 1.08999 * 110.71765 * 263.82996 * 27 26 17 29 29 O 1.42902 * 110.71672 * 140.73459 * 27 26 17 30 30 H 0.96996 * 119.99414 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47245 * 59.99712 * 10 9 7 32 32 H 1.09004 * 109.46857 * 299.99892 * 10 9 7 33 33 H 0.96998 * 120.00137 * 359.97438 * 13 11 10 34 34 H 1.08998 * 110.50042 * 160.34712 * 16 14 13 35 35 H 1.09006 * 110.34169 * 37.95210 * 16 14 13 36 36 H 1.09002 * 110.48969 * 357.07030 * 22 20 18 37 37 H 1.09002 * 110.48612 * 119.58697 * 22 20 18 38 38 H 1.08999 * 110.90868 * 97.38351 * 23 22 20 39 39 H 1.09003 * 110.91016 * 220.99202 * 23 22 20 40 40 H 1.09002 * 110.51777 * 278.38206 * 24 23 22 41 41 H 1.09000 * 110.77540 * 155.50397 * 24 23 22 42 42 H 1.08997 * 109.88028 * 120.70636 * 26 17 16 43 43 H 1.08994 * 109.88209 * 241.86857 * 26 17 16 44 44 H 0.96692 * 114.00188 * 61.45496 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3431 0.0003 14 6 2.3302 -7.7151 0.0003 15 1 1.3777 -7.7733 -0.5264 16 6 2.1994 -8.2652 1.4448 17 7 3.5626 -8.6936 1.8075 18 6 4.0441 -8.8027 3.0615 19 8 3.3365 -8.5323 4.0085 20 6 5.4621 -9.2608 3.2870 21 1 6.1511 -8.6137 2.7444 22 6 5.6245 -10.7169 2.8094 23 6 6.1029 -11.4811 4.0679 24 6 6.6711 -10.3335 4.9453 25 8 5.7698 -9.2347 4.6909 26 6 4.3078 -8.9881 0.5748 27 6 3.3648 -8.6964 -0.6115 28 1 2.8764 -9.6103 -0.9497 29 8 4.0786 -8.0797 -1.6849 30 1 -0.4849 0.8401 0.0004 31 1 3.1244 -3.7314 0.8905 32 1 3.1243 -3.7314 -0.8895 33 1 3.8007 -6.1835 0.0006 34 1 1.5158 -9.1138 1.4697 35 1 1.8562 -7.4806 2.1194 36 1 4.6703 -11.1132 2.4622 37 1 6.3723 -10.7778 2.0187 38 1 5.2672 -11.9734 4.5652 39 1 6.8811 -12.2008 3.8135 40 1 7.6840 -10.0794 4.6329 41 1 6.6534 -10.6082 5.9999 42 1 5.1894 -8.3501 0.5132 43 1 4.6050 -10.0367 0.5629 44 1 4.7879 -8.6257 -2.0505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489557607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:16 Heat of formation + Delta-G solvation = -150.932646 kcal Electronic energy + Delta-G solvation = -28047.890761 eV Core-core repulsion = 23899.014202 eV Total energy + Delta-G solvation = -4148.876559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06701 -39.88118 -38.63395 -37.88369 -35.90864 -33.98836 -32.66743 -32.39340 -31.16160 -29.81152 -29.09467 -28.00351 -25.45999 -24.78124 -23.12214 -22.15075 -21.55628 -20.47905 -19.82232 -18.07177 -17.90988 -17.54334 -16.98733 -16.90298 -16.32717 -16.15135 -15.81128 -15.16174 -14.96321 -14.77240 -14.70294 -14.51971 -14.19829 -14.01366 -13.69467 -13.34100 -13.24925 -13.17582 -12.74220 -12.51782 -12.32513 -12.26497 -12.16334 -11.83831 -11.75237 -11.48016 -11.36618 -11.03349 -10.99146 -10.75197 -10.72677 -10.51885 -9.79926 -9.78018 -9.44154 -9.23067 -9.03248 -8.78471 -8.20296 -6.46029 -6.18298 -3.88448 2.25664 2.34391 2.99533 3.05897 3.25077 3.29555 3.33727 3.42521 3.57602 3.70174 3.83001 3.92901 4.05173 4.23163 4.23718 4.29320 4.46230 4.51363 4.66588 4.76225 4.84823 4.95481 5.02308 5.12124 5.15132 5.15659 5.16992 5.23043 5.28496 5.33039 5.48026 5.48327 5.63447 5.70674 5.87986 5.93150 6.18335 6.30509 6.56440 7.05110 7.12927 7.63000 7.70077 7.85173 8.38739 8.60284 9.27038 10.89177 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.002383 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.286330 B =11747.686241 C =12652.236962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.517 6.517 13 N -0.716 5.716 14 C 0.145 3.855 15 H 0.119 0.881 16 C 0.093 3.907 17 N -0.614 5.614 18 C 0.529 3.471 19 O -0.510 6.510 20 C 0.065 3.935 21 H 0.094 0.906 22 C -0.146 4.146 23 C -0.154 4.154 24 C 0.043 3.957 25 O -0.346 6.346 26 C 0.062 3.938 27 C 0.087 3.913 28 H 0.090 0.910 29 O -0.543 6.543 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.402 0.598 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.908 -28.121 0.579 32.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.323 3.677 12 O -0.391 6.391 13 N -0.370 5.370 14 C 0.038 3.962 15 H 0.137 0.863 16 C -0.030 4.030 17 N -0.352 5.352 18 C 0.316 3.684 19 O -0.383 6.383 20 C 0.004 3.996 21 H 0.112 0.888 22 C -0.184 4.184 23 C -0.192 4.192 24 C -0.033 4.033 25 O -0.264 6.264 26 C -0.062 4.062 27 C 0.026 3.974 28 H 0.107 0.893 29 O -0.347 6.347 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.236 0.764 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 13.883 -27.547 1.475 30.882 hybrid contribution 3.032 0.674 -0.304 3.121 sum 16.915 -26.873 1.170 31.775 Atomic orbital electron populations 1.70022 1.05935 1.27416 1.46933 1.24993 0.95038 0.99024 0.94576 0.86162 0.79423 0.81577 0.78303 1.20288 1.20761 1.19708 1.22865 0.94905 0.91659 1.58844 0.90948 1.85377 1.04864 0.96293 1.96709 1.23512 1.06610 0.95187 1.04941 1.20334 0.86463 0.86294 0.74636 1.90700 1.15291 1.85509 1.47642 1.45613 1.10178 1.03963 1.77200 1.22062 0.98174 0.82046 0.93919 0.86294 1.22899 0.83303 1.00537 0.96274 1.48245 1.14281 1.68005 1.04693 1.20116 0.88843 0.78066 0.81402 1.90776 1.59377 1.47908 1.40219 1.22565 0.93837 0.97797 0.85407 0.88805 1.22959 1.03137 0.93111 0.99202 1.23192 1.01864 0.98491 0.95620 1.23702 0.93264 0.85280 1.01091 1.89048 1.65333 1.50221 1.21763 1.22968 0.96519 1.01544 0.85189 1.23147 0.92073 0.96188 0.85953 0.89254 1.86665 1.51484 1.46447 1.50113 0.92209 0.89295 0.89122 0.76402 0.89917 0.88752 0.89946 0.89474 0.90099 0.89589 0.91711 0.88339 0.90166 0.90520 0.77088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -15.52 9.50 30.94 0.29 -15.23 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 11 C 0.54 10.14 7.85 -10.99 -0.09 10.05 16 12 O -0.52 -11.66 15.50 5.56 0.09 -11.57 16 13 N -0.72 -9.68 4.82 -51.62 -0.25 -9.93 16 14 C 0.15 1.57 3.31 -65.66 -0.22 1.35 16 15 H 0.12 1.43 7.54 -51.93 -0.39 1.04 16 16 C 0.09 1.04 6.62 -2.41 -0.02 1.02 16 17 N -0.61 -5.86 3.32 -170.38 -0.57 -6.43 16 18 C 0.53 6.47 7.01 -10.98 -0.08 6.40 16 19 O -0.51 -8.94 16.79 -13.94 -0.23 -9.17 16 20 C 0.07 0.58 3.27 -27.31 -0.09 0.49 16 21 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 22 C -0.15 -0.74 5.14 -25.20 -0.13 -0.87 16 23 C -0.15 -0.76 7.17 -24.60 -0.18 -0.93 16 24 C 0.04 0.28 7.72 38.34 0.30 0.58 16 25 O -0.35 -3.95 10.75 -54.73 -0.59 -4.54 16 26 C 0.06 0.33 5.89 -3.06 -0.02 0.31 16 27 C 0.09 0.54 4.11 -24.89 -0.10 0.44 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 O -0.54 -3.52 12.69 -35.23 -0.45 -3.96 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 32 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 33 H 0.40 4.67 8.40 -40.82 -0.34 4.33 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.41 8.03 -51.93 -0.42 1.00 16 36 H 0.08 0.43 7.25 -51.93 -0.38 0.06 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.37 8.06 -51.93 -0.42 -0.05 16 43 H 0.08 0.21 6.69 -51.93 -0.35 -0.14 16 44 H 0.38 0.58 9.11 45.56 0.42 0.99 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -40.62 380.40 -8.61 -49.23 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.65 Total: 0.87 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.20 Total: 2.69 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.08 Total: -42.20 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.18 Total: -29.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.62 -8.61 -49.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489557607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.701 kcal (2) G-P(sol) polarization free energy of solvation -40.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds