Wall clock time and date at job start Wed Apr 1 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47218 * 269.99752 * 3 2 1 5 5 H 1.48498 * 109.47506 * 30.00141 * 3 2 1 6 6 H 1.48507 * 109.47154 * 150.00036 * 3 2 1 7 7 C 1.38794 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00351 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00054 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47193 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99851 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99796 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99938 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.88488 * 31.12191 * 14 13 11 16 16 C 1.55125 * 111.19889 * 267.19018 * 14 13 11 17 17 N 1.47423 * 104.72142 * 279.19182 * 16 14 13 18 18 C 1.34773 * 125.64963 * 155.81397 * 17 16 14 19 19 O 1.21277 * 120.00282 * 359.71461 * 18 17 16 20 20 C 1.50708 * 120.00240 * 179.71510 * 18 17 16 21 21 H 1.08999 * 109.86556 * 56.00956 * 20 18 17 22 22 C 1.54098 * 109.87689 * 295.00307 * 20 18 17 23 23 C 1.54813 * 104.30472 * 238.32694 * 22 20 18 24 24 C 1.55227 * 101.98357 * 339.26359 * 23 22 20 25 25 O 1.43744 * 110.00380 * 177.09532 * 20 18 17 26 26 C 1.47027 * 108.70353 * 335.55007 * 17 16 14 27 27 C 1.54326 * 107.26845 * 1.28754 * 26 17 16 28 28 H 1.08999 * 110.71765 * 263.82996 * 27 26 17 29 29 O 1.42902 * 110.71672 * 140.73459 * 27 26 17 30 30 H 0.96996 * 119.99414 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47245 * 59.99712 * 10 9 7 32 32 H 1.09004 * 109.46857 * 299.99892 * 10 9 7 33 33 H 0.96998 * 120.00137 * 359.97438 * 13 11 10 34 34 H 1.08998 * 110.50042 * 160.34712 * 16 14 13 35 35 H 1.09006 * 110.34169 * 37.95210 * 16 14 13 36 36 H 1.09002 * 110.48969 * 357.07030 * 22 20 18 37 37 H 1.09002 * 110.48612 * 119.58697 * 22 20 18 38 38 H 1.08999 * 110.90868 * 97.38351 * 23 22 20 39 39 H 1.09003 * 110.91016 * 220.99202 * 23 22 20 40 40 H 1.09002 * 110.51777 * 278.38206 * 24 23 22 41 41 H 1.09000 * 110.77540 * 155.50397 * 24 23 22 42 42 H 1.08997 * 109.88028 * 120.70636 * 26 17 16 43 43 H 1.08994 * 109.88209 * 241.86857 * 26 17 16 44 44 H 0.96692 * 114.00188 * 61.45496 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3431 0.0003 14 6 2.3302 -7.7151 0.0003 15 1 1.3777 -7.7733 -0.5264 16 6 2.1994 -8.2652 1.4448 17 7 3.5626 -8.6936 1.8075 18 6 4.0441 -8.8027 3.0615 19 8 3.3365 -8.5323 4.0085 20 6 5.4621 -9.2608 3.2870 21 1 6.1511 -8.6137 2.7444 22 6 5.6245 -10.7169 2.8094 23 6 6.1029 -11.4811 4.0679 24 6 6.6711 -10.3335 4.9453 25 8 5.7698 -9.2347 4.6909 26 6 4.3078 -8.9881 0.5748 27 6 3.3648 -8.6964 -0.6115 28 1 2.8764 -9.6103 -0.9497 29 8 4.0786 -8.0797 -1.6849 30 1 -0.4849 0.8401 0.0004 31 1 3.1244 -3.7314 0.8905 32 1 3.1243 -3.7314 -0.8895 33 1 3.8007 -6.1835 0.0006 34 1 1.5158 -9.1138 1.4697 35 1 1.8562 -7.4806 2.1194 36 1 4.6703 -11.1132 2.4622 37 1 6.3723 -10.7778 2.0187 38 1 5.2672 -11.9734 4.5652 39 1 6.8811 -12.2008 3.8135 40 1 7.6840 -10.0794 4.6329 41 1 6.6534 -10.6082 5.9999 42 1 5.1894 -8.3501 0.5132 43 1 4.6050 -10.0367 0.5629 44 1 4.7879 -8.6257 -2.0505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489557607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:15 Heat of formation + Delta-G solvation = -185.605788 kcal Electronic energy + Delta-G solvation = -28049.394301 eV Core-core repulsion = 23899.014202 eV Total energy + Delta-G solvation = -4150.380099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86748 -40.83123 -39.70024 -38.76804 -36.56985 -35.18309 -34.60043 -33.26031 -32.13556 -30.78111 -29.89782 -28.99560 -27.67311 -25.48764 -23.71686 -22.66089 -22.47700 -21.59562 -20.67040 -19.88808 -18.72357 -18.35324 -17.88043 -17.68378 -17.38801 -17.02784 -16.89628 -16.77823 -16.37578 -15.97684 -15.70981 -15.41313 -15.18704 -14.88388 -14.60704 -14.52775 -14.35860 -14.19346 -13.89394 -13.61775 -13.37633 -13.18633 -13.05857 -12.89761 -12.80979 -12.67924 -12.64502 -12.23510 -11.99166 -11.91044 -11.72244 -11.29746 -11.15711 -11.11331 -10.98560 -10.58279 -10.33676 -10.30991 -9.72973 -8.68954 -8.36298 -6.14739 1.24088 1.40641 1.41414 1.44466 1.54586 1.55860 1.60185 2.19478 2.26123 2.90213 2.97639 3.03650 3.19743 3.29364 3.39768 3.51570 3.63069 3.82947 3.92582 4.00731 4.10758 4.22955 4.23911 4.26602 4.28846 4.39095 4.45840 4.55680 4.62706 4.65879 4.68951 4.76283 4.84317 4.89236 4.98310 5.06092 5.13628 5.39691 5.41054 5.77497 6.18055 6.30695 6.43771 6.94687 6.99409 7.04648 7.19503 8.73072 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.002383 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.286330 B =11747.686241 C =12652.236962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.128 4.128 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.692 5.692 14 C 0.133 3.867 15 H 0.105 0.895 16 C 0.095 3.905 17 N -0.607 5.607 18 C 0.518 3.482 19 O -0.582 6.582 20 C 0.065 3.935 21 H 0.117 0.883 22 C -0.138 4.138 23 C -0.150 4.150 24 C 0.033 3.967 25 O -0.394 6.394 26 C 0.059 3.941 27 C 0.108 3.892 28 H 0.123 0.877 29 O -0.562 6.562 30 H 0.271 0.729 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.414 0.586 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.979 -30.096 -1.264 36.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.345 5.345 14 C 0.026 3.974 15 H 0.123 0.877 16 C -0.029 4.029 17 N -0.343 5.343 18 C 0.307 3.693 19 O -0.461 6.461 20 C 0.004 3.996 21 H 0.134 0.866 22 C -0.176 4.176 23 C -0.188 4.188 24 C -0.042 4.042 25 O -0.313 6.313 26 C -0.062 4.062 27 C 0.047 3.953 28 H 0.140 0.860 29 O -0.370 6.370 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 18.044 -29.594 -0.429 34.664 hybrid contribution 1.809 1.164 0.263 2.167 sum 19.854 -28.430 -0.165 34.676 Atomic orbital electron populations 1.70188 1.07973 1.28643 1.47938 1.26161 0.96021 1.03394 0.93694 0.84927 0.78102 0.75864 0.78912 1.19000 1.20257 1.18349 1.23194 0.95302 0.92001 1.58983 0.90026 1.85542 1.10408 0.99213 1.97031 1.23343 1.03607 0.94605 1.06410 1.20040 0.86284 0.86691 0.74795 1.90685 1.17171 1.85985 1.50190 1.45340 1.10120 1.04177 1.74816 1.22294 0.99745 0.81143 0.94168 0.87747 1.22726 0.84997 0.99817 0.95393 1.48288 1.13864 1.66567 1.05602 1.21006 0.90080 0.77031 0.81155 1.90735 1.61422 1.51318 1.42618 1.22785 0.91231 1.00692 0.84873 0.86562 1.23039 1.04431 0.89980 1.00118 1.23202 1.02162 0.98297 0.95105 1.23965 0.93636 0.84910 1.01703 1.89007 1.66566 1.52213 1.23545 1.23320 0.96070 1.04558 0.82294 1.23026 0.90975 0.94954 0.86332 0.85995 1.86608 1.52643 1.47797 1.49992 0.91954 0.88083 0.87098 0.74888 0.88219 0.93663 0.89989 0.85324 0.91647 0.86487 0.89560 0.88576 0.88490 0.86233 0.74102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.26 13.22 21.65 0.29 -56.97 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 44.72 29.55 68.60 2.03 46.74 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -32.22 9.50 67.95 0.65 -31.57 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -5.40 6.16 71.24 0.44 -4.96 16 11 C 0.54 20.70 7.85 87.66 0.69 21.39 16 12 O -0.56 -26.63 15.50 -3.02 -0.05 -26.68 16 13 N -0.69 -18.20 4.82 -435.61 -2.10 -20.30 16 14 C 0.13 2.74 3.31 46.46 0.15 2.89 16 15 H 0.10 2.52 7.54 -2.39 -0.02 2.50 16 16 C 0.09 2.15 6.62 86.93 0.58 2.72 16 17 N -0.61 -10.68 3.32 -811.35 -2.70 -13.37 16 18 C 0.52 12.60 7.01 87.66 0.61 13.21 16 19 O -0.58 -21.84 16.79 15.63 0.26 -21.58 16 20 C 0.07 1.02 3.27 30.22 0.10 1.12 16 21 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 22 C -0.14 -0.84 5.14 31.58 0.16 -0.67 16 23 C -0.15 -1.04 7.17 31.98 0.23 -0.81 16 24 C 0.03 0.39 7.72 72.75 0.56 0.95 16 25 O -0.39 -8.93 10.75 -130.33 -1.40 -10.33 16 26 C 0.06 0.35 5.89 86.73 0.51 0.87 16 27 C 0.11 0.89 4.11 31.78 0.13 1.02 16 28 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 29 O -0.56 -4.76 12.69 -148.98 -1.89 -6.65 16 30 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.10 3.97 8.14 -2.40 -0.02 3.96 16 32 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 33 H 0.41 8.77 8.40 -92.71 -0.78 7.99 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.48 8.03 -2.38 -0.02 1.46 16 36 H 0.08 0.54 7.25 -2.39 -0.02 0.52 16 37 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 0.36 8.06 -2.39 -0.02 0.34 16 43 H 0.12 -0.16 6.69 -2.39 -0.02 -0.17 16 44 H 0.41 -1.01 9.11 -74.06 -0.67 -1.68 16 Total: -1.00 -97.82 380.40 -1.86 -99.68 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.41 Total: 11.89 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.28 Total: 7.32 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -4.51 Total: -90.65 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -3.08 Total: -65.24 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -97.82 -1.86 -99.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489557607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.929 kcal (2) G-P(sol) polarization free energy of solvation -97.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds