Wall clock time and date at job start Wed Apr 1 2020 03:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47385 * 2 1 4 4 C 1.50707 * 109.47383 * 240.00363 * 2 1 3 5 5 H 1.07998 * 119.99921 * 240.00543 * 4 2 1 6 6 C 1.37870 * 119.99710 * 59.99783 * 4 2 1 7 7 N 1.31516 * 120.00336 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46515 * 60.00159 * 8 6 4 10 10 H 1.48493 * 109.47141 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47060 * 300.00564 * 8 6 4 12 12 N 1.46506 * 109.47250 * 120.00262 * 2 1 3 13 13 C 1.46504 * 119.99677 * 60.00111 * 12 2 1 14 14 S 1.65597 * 120.00105 * 240.00197 * 12 2 1 15 15 O 1.42098 * 106.39972 * 23.53900 * 14 12 2 16 16 O 1.42103 * 106.39867 * 156.45848 * 14 12 2 17 17 N 1.65601 * 107.21702 * 269.99901 * 14 12 2 18 18 C 1.47066 * 136.05668 * 269.62910 * 17 14 12 19 19 C 1.53757 * 87.89008 * 152.96414 * 18 17 14 20 20 C 1.52998 * 114.39420 * 272.67964 * 19 18 17 21 21 C 1.52994 * 114.26587 * 139.79041 * 19 18 17 22 22 C 1.53003 * 109.47052 * 205.64304 * 21 19 18 23 23 F 1.39904 * 109.46953 * 64.92806 * 22 21 19 24 24 F 1.39900 * 109.47515 * 184.92594 * 22 21 19 25 25 F 1.39896 * 109.47329 * 304.92936 * 22 21 19 26 26 C 1.47067 * 136.05792 * 90.00140 * 17 14 12 27 27 H 1.09005 * 109.46936 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47132 * 299.99541 * 1 2 3 29 29 H 1.08999 * 109.46799 * 59.99721 * 1 2 3 30 30 H 0.96997 * 120.00137 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47241 * 270.00025 * 13 12 2 32 32 H 1.09002 * 109.46922 * 149.99975 * 13 12 2 33 33 H 1.09001 * 109.47425 * 30.00019 * 13 12 2 34 34 H 1.08996 * 113.46926 * 267.69828 * 18 17 14 35 35 H 1.08999 * 113.46625 * 38.13424 * 18 17 14 36 36 H 1.08999 * 109.47075 * 147.35479 * 20 19 18 37 37 H 1.09003 * 109.47068 * 267.35449 * 20 19 18 38 38 H 1.08998 * 109.47360 * 27.35361 * 20 19 18 39 39 H 1.09000 * 109.47210 * 325.63888 * 21 19 18 40 40 H 1.09001 * 109.47116 * 85.64911 * 21 19 18 41 41 H 1.08997 * 113.46614 * 321.86507 * 26 17 14 42 42 H 1.08999 * 113.46657 * 92.30270 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3226 -1.1192 -4.0080 9 1 1.8281 -2.5195 -4.0083 10 1 1.8280 -0.4189 -5.2204 11 1 3.8076 -1.1187 -4.0077 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0933 1.4279 14 16 2.9704 0.1140 2.2863 15 8 2.6903 1.4971 2.1194 16 8 2.8227 -0.5648 3.5259 17 7 4.5437 -0.1043 1.8180 18 6 5.6059 -1.0822 2.0980 19 6 6.1987 -0.7480 0.7193 20 6 5.6215 -1.5720 -0.4334 21 6 7.7260 -0.6618 0.6956 22 6 8.1676 0.2529 -0.4486 23 9 7.7257 1.5569 -0.2003 24 9 9.5635 0.2434 -0.5413 25 9 7.6173 -0.2049 -1.6506 26 6 5.4958 0.5980 0.9443 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7095 1.1620 -3.4843 31 1 0.7376 -2.1446 1.9992 32 1 2.4629 -2.5820 1.9862 33 1 1.5295 -2.5970 0.4707 34 1 6.2511 -0.7964 2.9287 35 1 5.2424 -2.1066 2.1791 36 1 5.6051 -0.9671 -1.3399 37 1 6.2417 -2.4536 -0.5960 38 1 4.6065 -1.8826 -0.1854 39 1 8.0818 -0.2563 1.6428 40 1 8.1439 -1.6575 0.5466 41 1 5.0384 1.0050 0.0426 42 1 6.1119 1.3268 1.4709 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332024945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:52 Heat of formation + Delta-G solvation = -213.843416 kcal Electronic energy + Delta-G solvation = -31128.002286 eV Core-core repulsion = 26434.540971 eV Total energy + Delta-G solvation = -4693.461315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.97094 -48.47896 -48.45521 -40.98472 -38.34450 -37.88075 -36.93270 -34.48910 -33.80683 -30.92884 -29.76587 -27.40483 -27.08342 -26.98267 -26.91590 -24.28122 -22.57760 -20.43642 -19.64947 -19.38558 -19.23824 -18.74043 -18.35986 -18.33676 -17.91049 -17.19834 -16.52433 -16.22318 -15.63679 -15.44361 -15.31644 -15.10106 -15.02058 -14.91084 -14.73784 -14.64916 -14.50353 -14.47838 -14.06244 -13.76559 -13.65416 -13.46486 -13.26912 -13.19489 -12.99112 -12.98572 -12.90079 -12.74506 -12.69101 -12.54305 -12.40053 -12.23628 -12.12982 -11.85869 -11.77644 -11.24970 -11.13990 -10.47545 -10.06482 -9.65889 -8.07146 -6.20863 -0.40971 1.46238 1.47569 1.53461 1.91270 1.98758 2.45726 2.55248 2.84119 3.11476 3.20191 3.22112 3.24928 3.49502 3.66130 3.88810 4.02373 4.12878 4.52102 4.58798 4.62156 4.65521 4.68569 4.74013 4.78823 4.91129 4.95087 4.99580 5.00967 5.04056 5.09995 5.16264 5.26086 5.52091 5.57770 5.65720 5.72750 5.87290 6.11188 6.30125 6.88339 7.48489 8.97621 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.005895 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.087785 B = 4748.635479 C = 6607.700560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.275 3.725 3 H 0.018 0.982 4 C -0.518 4.518 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.921 5.921 8 Si 0.950 3.050 9 H -0.267 1.267 10 H -0.295 1.295 11 H -0.268 1.268 12 N -0.993 5.993 13 C 0.103 3.897 14 S 2.816 3.184 15 O -1.020 7.020 16 O -1.002 7.002 17 N -1.054 6.054 18 C 0.147 3.853 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.137 4.137 22 C 0.444 3.556 23 F -0.194 7.194 24 F -0.189 7.189 25 F -0.193 7.193 26 C 0.124 3.876 27 H 0.045 0.955 28 H 0.015 0.985 29 H 0.069 0.931 30 H 0.261 0.739 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.990 -7.734 6.897 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.171 3.829 3 H 0.035 0.965 4 C -0.557 4.557 5 H 0.094 0.906 6 C -0.182 4.182 7 N -0.561 5.561 8 Si 0.776 3.224 9 H -0.192 1.192 10 H -0.221 1.221 11 H -0.193 1.193 12 N -0.835 5.835 13 C -0.043 4.043 14 S 2.828 3.172 15 O -1.004 7.004 16 O -0.986 6.986 17 N -0.895 5.895 18 C 0.023 3.977 19 C -0.093 4.093 20 C -0.189 4.189 21 C -0.176 4.176 22 C 0.390 3.610 23 F -0.176 7.176 24 F -0.171 7.171 25 F -0.174 7.174 26 C -0.002 4.002 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.072 0.928 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.342 -7.072 7.598 18.524 hybrid contribution -0.219 0.304 -1.714 1.754 sum 15.123 -6.768 5.884 17.582 Atomic orbital electron populations 1.21940 0.98039 1.00062 0.99743 1.18362 0.91756 0.91151 0.81645 0.96452 1.21564 1.31094 1.12945 0.90089 0.90606 1.25641 0.95290 0.95560 1.01726 1.70018 1.37742 1.24147 1.24154 0.85731 0.79047 0.78863 0.78771 1.19214 1.22087 1.19294 1.57663 1.64472 1.22595 1.38731 1.21367 1.00320 0.80376 1.02230 1.00490 0.72040 0.72160 0.72481 1.93519 1.84533 1.35082 1.87270 1.93512 1.86347 1.76422 1.42333 1.60259 1.25299 1.41289 1.62690 1.22854 0.85819 0.93524 0.95551 1.22307 0.92887 0.96444 0.97704 1.21701 1.01483 0.99745 0.95977 1.22930 0.95207 1.02337 0.97089 1.21092 0.74466 0.80473 0.84936 1.93176 1.89256 1.41007 1.94142 1.93174 1.30605 1.96580 1.96710 1.93188 1.85412 1.88632 1.50217 1.22900 0.88599 0.95633 0.93071 0.93595 0.96586 0.91273 0.92969 0.93257 0.90607 0.90349 0.86397 0.88714 0.93374 0.89480 0.92473 0.83765 0.83503 0.92838 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 8.97 71.98 0.65 -6.03 16 2 C 0.28 13.48 2.62 44.25 0.12 13.59 16 3 H 0.02 1.00 6.91 -2.39 -0.02 0.98 16 4 C -0.52 -25.58 7.99 25.60 0.20 -25.37 16 5 H 0.08 3.50 6.54 -2.91 -0.02 3.48 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -51.50 11.32 21.44 0.24 -51.26 16 8 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 N -0.99 -40.29 3.12 -520.41 -1.62 -41.91 16 13 C 0.10 3.39 9.28 127.77 1.19 4.57 16 14 S 2.82 110.86 6.64 -56.49 -0.37 110.49 16 15 O -1.02 -49.01 16.70 -128.00 -2.14 -51.14 16 16 O -1.00 -39.76 17.21 -128.00 -2.20 -41.96 16 17 N -1.05 -31.83 4.13 -549.29 -2.27 -34.10 16 18 C 0.15 2.75 7.82 83.27 0.65 3.40 16 19 C -0.09 -1.78 1.06 -51.76 -0.05 -1.84 16 20 C -0.13 -3.19 8.34 71.98 0.60 -2.59 16 21 C -0.14 -1.64 4.96 30.59 0.15 -1.48 16 22 C 0.44 8.56 3.13 71.98 0.23 8.78 16 23 F -0.19 -4.53 15.03 44.97 0.68 -3.85 16 24 F -0.19 -3.55 17.32 44.97 0.78 -2.77 16 25 F -0.19 -4.75 14.69 44.97 0.66 -4.08 16 26 C 0.12 3.41 6.34 83.18 0.53 3.94 16 27 H 0.04 2.03 7.67 -2.38 -0.02 2.02 16 28 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 30 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 33 H 0.08 2.61 7.02 -2.39 -0.02 2.59 16 34 H 0.12 1.42 7.95 -2.39 -0.02 1.40 16 35 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 36 H 0.05 1.43 6.73 -2.39 -0.02 1.42 16 37 H 0.09 1.54 8.05 -2.39 -0.02 1.52 16 38 H 0.06 1.62 7.13 -2.39 -0.02 1.61 16 39 H 0.14 0.87 7.92 -2.39 -0.02 0.85 16 40 H 0.15 0.91 8.08 -2.39 -0.02 0.89 16 41 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 42 H 0.10 2.40 7.39 -2.39 -0.02 2.39 16 Total: -1.00 -70.11 358.92 1.52 -68.59 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.04 Total: 10.56 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 4.70 Total: -1.69 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -3.65 Total: -127.27 kcal Atomic # 8 Polarization: -88.77 SS G_CDS: -4.34 Total: -93.11 kcal Atomic # 9 Polarization: -12.82 SS G_CDS: 2.12 Total: -10.70 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 110.86 SS G_CDS: -0.37 Total: 110.49 kcal Total: -70.11 1.52 -68.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332024945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.257 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds