Wall clock time and date at job start Wed Apr 1 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46903 * 2 1 4 4 C 1.35162 * 119.64762 * 276.69748 * 3 2 1 5 5 O 1.21586 * 119.86465 * 358.85469 * 4 3 2 6 6 C 1.47256 * 120.38487 * 178.45670 * 4 3 2 7 7 C 1.39135 * 122.16451 * 163.68119 * 6 4 3 8 8 C 1.38028 * 119.48468 * 178.62430 * 7 6 4 9 9 C 1.38578 * 120.72231 * 0.36798 * 8 7 6 10 10 C 1.38420 * 120.43324 * 0.38713 * 9 8 7 11 11 C 1.37741 * 119.43025 * 359.81389 * 10 9 8 12 12 N 1.39681 * 123.57285 * 178.83829 * 11 10 9 13 13 C 1.33454 * 128.00488 * 32.04914 * 12 11 10 14 14 O 1.21274 * 124.65718 * 347.34940 * 13 12 11 15 15 C 1.50891 * 110.68376 * 167.36920 * 13 12 11 16 16 C 1.54027 * 105.76363 * 5.45875 * 15 13 12 17 17 C 1.46164 * 119.64893 * 96.68220 * 3 2 1 18 18 C 1.50696 * 109.78653 * 89.39859 * 17 3 2 19 19 O 1.21214 * 119.99673 * 134.84209 * 18 17 3 20 20 O 1.34306 * 120.00240 * 314.84060 * 18 17 3 21 21 C 1.34918 * 117.00092 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00620 * 359.97438 * 21 20 18 23 23 C 1.38756 * 119.99930 * 179.97438 * 21 20 18 24 24 N 1.31444 * 119.99880 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00235 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47187 * 89.99665 * 25 23 21 27 27 H 1.48493 * 109.47473 * 209.99938 * 25 23 21 28 28 H 1.48510 * 109.46811 * 329.99706 * 25 23 21 29 29 H 1.09004 * 109.46802 * 306.64545 * 1 2 3 30 30 H 1.08997 * 109.47117 * 66.64447 * 1 2 3 31 31 H 1.09002 * 109.47198 * 186.64619 * 1 2 3 32 32 H 1.08999 * 109.46652 * 240.00354 * 2 1 3 33 33 H 1.08999 * 109.47044 * 120.00187 * 2 1 3 34 34 H 1.08002 * 120.25915 * 358.90115 * 7 6 4 35 35 H 1.07995 * 119.64050 * 180.33909 * 8 7 6 36 36 H 1.08001 * 119.77979 * 180.36707 * 9 8 7 37 37 H 1.08001 * 120.28405 * 179.83448 * 10 9 8 38 38 H 1.09001 * 110.19084 * 246.38194 * 15 13 12 39 39 H 1.08996 * 110.25169 * 124.56774 * 15 13 12 40 40 H 1.08999 * 110.53019 * 243.64098 * 16 15 13 41 41 H 1.09001 * 110.53026 * 120.88291 * 16 15 13 42 42 H 0.97004 * 119.99768 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1120 2.0573 -1.1667 5 8 1.8110 1.5096 -2.2096 6 6 2.5685 3.4572 -1.1817 7 6 2.9963 4.0843 -2.3477 8 6 3.3858 5.4077 -2.3037 9 6 3.3621 6.1134 -1.1113 10 6 2.9537 5.4983 0.0595 11 6 2.5663 4.1768 0.0302 12 7 2.1618 3.4651 1.1620 13 6 1.5255 3.9282 2.2398 14 8 1.3838 5.1030 2.5054 15 6 1.0070 2.7892 3.0829 16 6 1.5450 1.5040 2.4264 17 6 2.3987 2.0137 1.2616 18 6 3.8557 1.7526 1.5443 19 8 4.5714 2.6557 1.9205 20 8 4.3612 0.5192 1.3795 21 6 5.6725 0.3535 1.6503 22 1 6.2656 1.1926 1.9829 23 6 6.2592 -0.8951 1.5017 24 7 7.5368 -1.0564 1.7651 25 14 5.2338 -2.3464 0.9258 26 1 5.2759 -2.4251 -0.5565 27 1 5.7814 -3.5998 1.5038 28 1 3.8287 -2.1679 1.3724 29 1 -0.3633 0.6134 0.8246 30 1 -0.3633 0.4074 -0.9434 31 1 -0.3634 -1.0208 0.1189 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0192 3.5410 -3.2809 35 1 3.7131 5.8985 -3.2083 36 1 3.6645 7.1501 -1.0955 37 1 2.9387 6.0498 0.9879 38 1 -0.0830 2.7852 3.0805 39 1 1.3802 2.8750 4.1035 40 1 0.7231 0.8900 2.0581 41 1 2.1571 0.9418 3.1316 42 1 7.9471 -1.9292 1.6608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018751711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:39 Heat of formation + Delta-G solvation = -79.821592 kcal Electronic energy + Delta-G solvation = -32267.616529 eV Core-core repulsion = 27986.379625 eV Total energy + Delta-G solvation = -4281.236904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18058 -39.54670 -39.31902 -38.40634 -37.12328 -35.59053 -34.70469 -33.61653 -32.50125 -31.65980 -30.46188 -29.39509 -27.96979 -25.60462 -24.76746 -23.53025 -22.78892 -22.30345 -21.15640 -20.28516 -19.14900 -18.57100 -18.13344 -17.52827 -16.67047 -16.27252 -15.97600 -15.82002 -15.42353 -15.04675 -14.87933 -14.59127 -14.45377 -14.30975 -14.13087 -13.87834 -13.73870 -13.40923 -13.01430 -12.84073 -12.69756 -12.67262 -12.47758 -12.26469 -12.10863 -11.89893 -11.52555 -11.41325 -11.36137 -10.97259 -10.72069 -10.58360 -10.50113 -10.12053 -9.89932 -9.88732 -9.78447 -9.06067 -8.85892 -8.79387 -8.20564 -6.55098 -4.31382 0.74083 1.27358 2.18426 2.28568 2.55268 2.84693 2.99532 3.12387 3.18910 3.20280 3.57403 3.82537 3.98592 4.07880 4.13967 4.27901 4.59436 4.74756 4.82937 4.92768 4.96371 5.07681 5.16628 5.22887 5.26816 5.31577 5.35009 5.36701 5.50628 5.60955 5.66361 5.82026 5.92483 5.92749 6.01727 6.11235 6.18038 6.28705 6.36908 6.39470 6.78021 6.89741 7.12659 7.46697 7.79345 7.84850 8.04487 8.34473 8.80348 9.39770 10.52319 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005308 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.116053 B = 5273.398491 C = 5371.515411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.603 5.603 4 C 0.574 3.426 5 O -0.522 6.522 6 C -0.170 4.170 7 C -0.033 4.033 8 C -0.147 4.147 9 C -0.067 4.067 10 C -0.129 4.129 11 C 0.203 3.797 12 N -0.546 5.546 13 C 0.537 3.463 14 O -0.503 6.503 15 C -0.147 4.147 16 C -0.139 4.139 17 C 0.406 3.594 18 C 0.383 3.617 19 O -0.514 6.514 20 O -0.231 6.231 21 C -0.383 4.383 22 H 0.111 0.889 23 C 0.071 3.929 24 N -0.863 5.863 25 Si 0.901 3.099 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.257 1.257 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.851 4.995 -2.420 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 N -0.339 5.339 4 C 0.365 3.635 5 O -0.399 6.399 6 C -0.175 4.175 7 C -0.052 4.052 8 C -0.166 4.166 9 C -0.086 4.086 10 C -0.149 4.149 11 C 0.109 3.891 12 N -0.272 5.272 13 C 0.326 3.674 14 O -0.376 6.376 15 C -0.187 4.187 16 C -0.177 4.177 17 C 0.233 3.767 18 C 0.224 3.776 19 O -0.407 6.407 20 O -0.137 6.137 21 C -0.458 4.458 22 H 0.129 0.871 23 C -0.134 4.134 24 N -0.501 5.501 25 Si 0.726 3.274 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.181 1.181 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.715 5.431 -2.667 15.910 hybrid contribution 0.122 -0.699 -0.142 0.723 sum -14.592 4.732 -2.809 15.596 Atomic orbital electron populations 1.22313 0.95503 1.02500 1.02605 1.21614 0.94107 0.80578 1.05037 1.48164 1.65938 1.14949 1.04860 1.17995 0.76918 0.85707 0.82918 1.90748 1.49096 1.69492 1.30516 1.19821 1.09602 0.94436 0.93690 1.20981 0.93215 0.94200 0.96791 1.21128 1.02674 0.94238 0.98569 1.21299 0.95718 0.99969 0.91600 1.20766 1.00690 0.93254 1.00176 1.17777 0.95080 0.92387 0.83809 1.45528 1.55448 1.08107 1.18106 1.20553 0.76261 0.90323 0.80223 1.90726 1.57670 1.17902 1.71342 1.22183 1.03706 0.91682 1.01147 1.22805 1.00826 0.98617 0.95475 1.20015 0.91482 0.78144 0.87024 1.22860 0.89178 0.83300 0.82215 1.90675 1.59392 1.45008 1.45607 1.83484 1.28728 1.29287 1.72246 1.20681 0.79925 0.98811 1.46376 0.87129 1.24546 0.95473 0.97811 0.95597 1.69597 1.10174 1.25428 1.44889 0.86293 0.80982 0.80466 0.79700 1.19528 1.20458 1.18089 0.92257 0.91809 0.90953 0.88976 0.88846 0.84193 0.84961 0.84786 0.83961 0.86388 0.86198 0.86525 0.86797 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 9.81 37.16 0.36 -1.47 16 2 C 0.11 1.55 5.16 -4.04 -0.02 1.53 16 3 N -0.60 -10.24 2.34 -164.46 -0.39 -10.63 16 4 C 0.57 10.59 7.48 -12.42 -0.09 10.49 16 5 O -0.52 -10.16 16.27 5.29 0.09 -10.07 16 6 C -0.17 -3.00 5.82 -104.88 -0.61 -3.61 16 7 C -0.03 -0.49 9.66 -39.33 -0.38 -0.87 16 8 C -0.15 -1.83 10.01 -39.53 -0.40 -2.22 16 9 C -0.07 -0.86 10.04 -39.39 -0.40 -1.25 16 10 C -0.13 -2.05 9.44 -39.70 -0.37 -2.43 16 11 C 0.20 3.61 6.06 -83.44 -0.51 3.10 16 12 N -0.55 -9.50 2.25 -103.53 -0.23 -9.74 16 13 C 0.54 8.52 7.97 -11.48 -0.09 8.43 16 14 O -0.50 -8.95 16.33 5.56 0.09 -8.86 16 15 C -0.15 -1.62 6.85 -27.25 -0.19 -1.80 16 16 C -0.14 -1.71 5.59 -26.12 -0.15 -1.85 16 17 C 0.41 7.03 1.02 -191.98 -0.19 6.83 16 18 C 0.38 8.67 6.46 36.00 0.23 8.90 16 19 O -0.51 -13.33 15.66 -19.06 -0.30 -13.63 16 20 O -0.23 -5.68 8.32 -20.68 -0.17 -5.85 16 21 C -0.38 -10.81 10.10 30.92 0.31 -10.50 16 22 H 0.11 3.50 7.09 -52.49 -0.37 3.13 16 23 C 0.07 1.94 5.49 -17.53 -0.10 1.85 16 24 N -0.86 -24.49 13.96 55.48 0.77 -23.72 16 25 Si 0.90 20.05 28.62 -169.99 -4.86 15.18 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 29 H 0.06 0.55 6.07 -51.93 -0.32 0.23 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.43 7.59 -51.93 -0.39 1.03 16 33 H 0.09 1.28 7.31 -51.93 -0.38 0.90 16 34 H 0.14 1.91 7.87 -52.49 -0.41 1.50 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.14 2.30 6.92 -52.49 -0.36 1.94 16 38 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.12 1.11 4.30 -51.93 -0.22 0.89 16 41 H 0.11 1.38 7.69 -51.93 -0.40 0.98 16 42 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -35.21 353.89 -6.78 -41.99 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.53 Total: 4.85 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: -2.58 Total: 15.14 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.16 Total: -44.08 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.29 Total: -38.41 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.86 Total: 15.18 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.21 -6.78 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018751711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.832 kcal (2) G-P(sol) polarization free energy of solvation -35.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds