Wall clock time and date at job start Wed Apr 1 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46903 * 2 1 4 4 C 1.35162 * 119.64762 * 276.69748 * 3 2 1 5 5 O 1.21586 * 119.86465 * 358.85469 * 4 3 2 6 6 C 1.47256 * 120.38487 * 178.45670 * 4 3 2 7 7 C 1.39135 * 122.16451 * 163.68119 * 6 4 3 8 8 C 1.38028 * 119.48468 * 178.62430 * 7 6 4 9 9 C 1.38578 * 120.72231 * 0.36798 * 8 7 6 10 10 C 1.38420 * 120.43324 * 0.38713 * 9 8 7 11 11 C 1.37741 * 119.43025 * 359.81389 * 10 9 8 12 12 N 1.39681 * 123.57285 * 178.83829 * 11 10 9 13 13 C 1.33454 * 128.00488 * 32.04914 * 12 11 10 14 14 O 1.21274 * 124.65718 * 347.34940 * 13 12 11 15 15 C 1.50891 * 110.68376 * 167.36920 * 13 12 11 16 16 C 1.54027 * 105.76363 * 5.45875 * 15 13 12 17 17 C 1.46164 * 119.64893 * 96.68220 * 3 2 1 18 18 C 1.50696 * 109.78653 * 89.39859 * 17 3 2 19 19 O 1.21214 * 119.99673 * 134.84209 * 18 17 3 20 20 O 1.34306 * 120.00240 * 314.84060 * 18 17 3 21 21 C 1.34918 * 117.00092 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00620 * 359.97438 * 21 20 18 23 23 C 1.38756 * 119.99930 * 179.97438 * 21 20 18 24 24 N 1.31444 * 119.99880 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00235 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47187 * 89.99665 * 25 23 21 27 27 H 1.48493 * 109.47473 * 209.99938 * 25 23 21 28 28 H 1.48510 * 109.46811 * 329.99706 * 25 23 21 29 29 H 1.09004 * 109.46802 * 306.64545 * 1 2 3 30 30 H 1.08997 * 109.47117 * 66.64447 * 1 2 3 31 31 H 1.09002 * 109.47198 * 186.64619 * 1 2 3 32 32 H 1.08999 * 109.46652 * 240.00354 * 2 1 3 33 33 H 1.08999 * 109.47044 * 120.00187 * 2 1 3 34 34 H 1.08002 * 120.25915 * 358.90115 * 7 6 4 35 35 H 1.07995 * 119.64050 * 180.33909 * 8 7 6 36 36 H 1.08001 * 119.77979 * 180.36707 * 9 8 7 37 37 H 1.08001 * 120.28405 * 179.83448 * 10 9 8 38 38 H 1.09001 * 110.19084 * 246.38194 * 15 13 12 39 39 H 1.08996 * 110.25169 * 124.56774 * 15 13 12 40 40 H 1.08999 * 110.53019 * 243.64098 * 16 15 13 41 41 H 1.09001 * 110.53026 * 120.88291 * 16 15 13 42 42 H 0.97004 * 119.99768 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1120 2.0573 -1.1667 5 8 1.8110 1.5096 -2.2096 6 6 2.5685 3.4572 -1.1817 7 6 2.9963 4.0843 -2.3477 8 6 3.3858 5.4077 -2.3037 9 6 3.3621 6.1134 -1.1113 10 6 2.9537 5.4983 0.0595 11 6 2.5663 4.1768 0.0302 12 7 2.1618 3.4651 1.1620 13 6 1.5255 3.9282 2.2398 14 8 1.3838 5.1030 2.5054 15 6 1.0070 2.7892 3.0829 16 6 1.5450 1.5040 2.4264 17 6 2.3987 2.0137 1.2616 18 6 3.8557 1.7526 1.5443 19 8 4.5714 2.6557 1.9205 20 8 4.3612 0.5192 1.3795 21 6 5.6725 0.3535 1.6503 22 1 6.2656 1.1926 1.9829 23 6 6.2592 -0.8951 1.5017 24 7 7.5368 -1.0564 1.7651 25 14 5.2338 -2.3464 0.9258 26 1 5.2759 -2.4251 -0.5565 27 1 5.7814 -3.5998 1.5038 28 1 3.8287 -2.1679 1.3724 29 1 -0.3633 0.6134 0.8246 30 1 -0.3633 0.4074 -0.9434 31 1 -0.3634 -1.0208 0.1189 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0192 3.5410 -3.2809 35 1 3.7131 5.8985 -3.2083 36 1 3.6645 7.1501 -1.0955 37 1 2.9387 6.0498 0.9879 38 1 -0.0830 2.7852 3.0805 39 1 1.3802 2.8750 4.1035 40 1 0.7231 0.8900 2.0581 41 1 2.1571 0.9418 3.1316 42 1 7.9471 -1.9292 1.6608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018751711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:39 Heat of formation + Delta-G solvation = -102.997027 kcal Electronic energy + Delta-G solvation = -32268.621491 eV Core-core repulsion = 27986.379625 eV Total energy + Delta-G solvation = -4282.241866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.48124 -41.11901 -40.79569 -39.64057 -38.52041 -37.48164 -35.98773 -34.71550 -34.57300 -32.82682 -31.57205 -30.52190 -29.37891 -27.48519 -25.88700 -24.76041 -24.03238 -23.40189 -22.73320 -21.52764 -20.49957 -20.34574 -19.74278 -18.98993 -17.93262 -17.67629 -17.57586 -17.09686 -16.83486 -16.51584 -16.28192 -16.06784 -15.78016 -15.52268 -15.39235 -15.23475 -14.93073 -14.63322 -14.51547 -14.29859 -14.11531 -13.94455 -13.68626 -13.55917 -13.28952 -13.03339 -12.93140 -12.62534 -12.53281 -12.44811 -12.25785 -11.97508 -11.90567 -11.84876 -11.44099 -11.32441 -11.16840 -10.91707 -10.33165 -10.11163 -9.45125 -8.62865 -6.51092 -0.46947 0.09839 0.76622 0.96141 1.24811 1.30466 1.36247 1.48191 1.51833 1.66007 2.08296 2.21763 2.59563 2.75674 2.87439 3.03696 3.07038 3.57778 3.58864 3.84646 3.90574 4.05386 4.07684 4.16137 4.17237 4.20841 4.26783 4.40175 4.53398 4.59698 4.66558 4.74288 4.77458 4.88430 4.95727 5.03207 5.17820 5.24449 5.27528 5.32505 5.34636 5.61365 5.72952 5.76852 5.81439 6.31329 6.58261 6.69376 6.70138 7.35337 8.49138 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005308 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.116053 B = 5273.398491 C = 5371.515411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.602 5.602 4 C 0.565 3.435 5 O -0.542 6.542 6 C -0.203 4.203 7 C -0.042 4.042 8 C -0.135 4.135 9 C -0.056 4.056 10 C -0.149 4.149 11 C 0.172 3.828 12 N -0.555 5.555 13 C 0.523 3.477 14 O -0.531 6.531 15 C -0.134 4.134 16 C -0.133 4.133 17 C 0.411 3.589 18 C 0.386 3.614 19 O -0.554 6.554 20 O -0.229 6.229 21 C -0.408 4.408 22 H 0.055 0.945 23 C 0.024 3.976 24 N -0.908 5.908 25 Si 0.969 3.031 26 H -0.271 1.271 27 H -0.263 1.263 28 H -0.224 1.224 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.132 0.868 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.809 4.094 -2.694 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.338 5.338 4 C 0.356 3.644 5 O -0.421 6.421 6 C -0.209 4.209 7 C -0.061 4.061 8 C -0.153 4.153 9 C -0.074 4.074 10 C -0.169 4.169 11 C 0.078 3.922 12 N -0.281 5.281 13 C 0.315 3.685 14 O -0.407 6.407 15 C -0.174 4.174 16 C -0.170 4.170 17 C 0.237 3.763 18 C 0.228 3.772 19 O -0.448 6.448 20 O -0.136 6.136 21 C -0.483 4.483 22 H 0.073 0.927 23 C -0.178 4.178 24 N -0.547 5.547 25 Si 0.787 3.213 26 H -0.196 1.196 27 H -0.187 1.187 28 H -0.146 1.146 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.166 0.834 35 H 0.193 0.807 36 H 0.191 0.809 37 H 0.150 0.850 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.171 0.829 41 H 0.136 0.864 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.684 4.536 -2.916 18.488 hybrid contribution 1.165 -0.179 -0.114 1.184 sum -16.519 4.357 -3.030 17.350 Atomic orbital electron populations 1.22241 0.92276 1.04673 1.02557 1.21931 0.96788 0.79008 1.04742 1.48285 1.65301 1.15884 1.04284 1.18270 0.76731 0.86229 0.83128 1.90715 1.50222 1.70090 1.31053 1.20065 1.11474 0.94547 0.94767 1.21317 0.92968 0.95466 0.96364 1.21597 1.00602 0.93116 0.99967 1.21781 0.93566 1.01605 0.90491 1.20951 1.01780 0.93035 1.01176 1.18144 0.96403 0.93305 0.84341 1.45783 1.55648 1.08080 1.18549 1.21543 0.75633 0.91258 0.80106 1.90700 1.58739 1.19401 1.71814 1.22364 1.06207 0.88262 1.00524 1.23007 1.00955 0.99662 0.93409 1.20083 0.88155 0.78930 0.89127 1.24377 0.91479 0.81956 0.79346 1.90651 1.61360 1.45998 1.46800 1.83501 1.26658 1.30403 1.73036 1.20278 0.81427 0.98024 1.48618 0.92680 1.25551 0.96726 1.00690 0.94808 1.69694 1.12221 1.26883 1.45885 0.85298 0.80825 0.76190 0.78940 1.19595 1.18689 1.14593 0.90198 0.93489 0.88030 0.90604 0.87811 0.83409 0.80743 0.80942 0.85005 0.81880 0.84415 0.82895 0.86390 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.81 71.98 0.71 -2.15 16 2 C 0.10 2.54 5.16 86.38 0.45 2.98 16 3 N -0.60 -19.98 2.34 -792.29 -1.86 -21.84 16 4 C 0.57 21.02 7.48 86.55 0.65 21.67 16 5 O -0.54 -21.30 16.27 -3.99 -0.06 -21.37 16 6 C -0.20 -7.29 5.82 -20.03 -0.12 -7.41 16 7 C -0.04 -1.24 9.66 22.44 0.22 -1.02 16 8 C -0.13 -3.07 10.01 22.30 0.22 -2.85 16 9 C -0.06 -1.35 10.04 22.39 0.22 -1.12 16 10 C -0.15 -4.83 9.44 22.20 0.21 -4.63 16 11 C 0.17 6.24 6.06 38.44 0.23 6.47 16 12 N -0.55 -19.36 2.25 -600.58 -1.35 -20.71 16 13 C 0.52 16.20 7.97 87.92 0.70 16.90 16 14 O -0.53 -18.93 16.33 -3.01 -0.05 -18.98 16 15 C -0.13 -2.52 6.85 30.26 0.21 -2.31 16 16 C -0.13 -2.86 5.59 30.99 0.17 -2.68 16 17 C 0.41 13.94 1.02 87.26 0.09 14.02 16 18 C 0.39 17.93 6.46 71.23 0.46 18.39 16 19 O -0.55 -30.34 15.66 20.76 0.33 -30.02 16 20 O -0.23 -11.49 8.32 14.95 0.12 -11.36 16 21 C -0.41 -24.16 10.10 67.94 0.69 -23.48 16 22 H 0.06 3.79 7.09 -2.91 -0.02 3.77 16 23 C 0.02 1.33 5.49 84.87 0.47 1.79 16 24 N -0.91 -53.29 13.96 21.63 0.30 -52.99 16 25 Si 0.97 40.56 28.62 68.60 1.96 42.52 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 28 H -0.22 -8.09 7.11 99.48 0.71 -7.39 16 29 H 0.08 1.09 6.07 -2.39 -0.01 1.07 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 2.26 7.59 -2.39 -0.02 2.24 16 33 H 0.10 2.50 7.31 -2.39 -0.02 2.49 16 34 H 0.15 3.99 7.87 -2.91 -0.02 3.97 16 35 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.13 4.45 6.92 -2.91 -0.02 4.43 16 38 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.15 2.16 4.30 -2.39 -0.01 2.15 16 41 H 0.12 2.51 7.69 -2.39 -0.02 2.49 16 42 H 0.29 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -85.33 353.89 6.05 -79.28 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 1.08 Total: 20.86 kcal Atomic # 6 Polarization: 29.03 SS G_CDS: 5.57 Total: 34.60 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -2.91 Total: -95.53 kcal Atomic # 8 Polarization: -82.07 SS G_CDS: 0.34 Total: -81.73 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.96 Total: 42.52 kcal Total: -85.33 6.05 -79.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018751711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.714 kcal (2) G-P(sol) polarization free energy of solvation -85.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds