Wall clock time and date at job start Wed Apr 1 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47243 * 108.05092 * 3 2 1 5 5 C 1.34780 * 120.00387 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99598 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00003 * 180.02562 * 5 4 3 8 8 H 1.08996 * 109.47126 * 54.99837 * 7 5 4 9 9 C 1.52997 * 109.46855 * 294.99739 * 7 5 4 10 10 O 1.45206 * 109.46761 * 175.00150 * 7 5 4 11 11 C 1.34751 * 116.99557 * 209.99829 * 10 7 5 12 12 O 1.21507 * 120.00309 * 0.02562 * 11 10 7 13 13 C 1.47470 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.39832 * 120.06435 * 359.72880 * 13 11 10 15 15 C 1.37605 * 119.92983 * 179.80750 * 14 13 11 16 16 C 1.39271 * 120.06688 * 0.44127 * 15 14 13 17 17 N 1.39076 * 119.93127 * 179.76333 * 16 15 14 18 18 C 1.34785 * 119.99714 * 213.66631 * 17 16 15 19 19 O 1.21718 * 120.00138 * 5.28764 * 18 17 16 20 20 C 1.46198 * 119.99612 * 185.28100 * 18 17 16 21 21 H 1.07999 * 120.00078 * 0.02562 * 20 18 17 22 22 C 1.40123 * 119.99761 * 180.02562 * 20 18 17 23 23 N 1.30636 * 120.00352 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99996 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47349 * 90.00092 * 24 22 20 26 26 H 1.48501 * 109.46959 * 210.00099 * 24 22 20 27 27 H 1.48501 * 109.46890 * 329.99951 * 24 22 20 28 28 C 1.39272 * 120.13290 * 359.78943 * 16 15 14 29 29 C 1.37603 * 120.07093 * 359.97438 * 28 16 15 30 30 H 4.40645 * 5.51369 * 180.02562 * 4 1 2 31 31 H 1.09002 * 109.46986 * 348.05231 * 3 2 1 32 32 H 1.09001 * 109.47070 * 228.05301 * 3 2 1 33 33 H 0.97005 * 119.99828 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47420 * 60.00652 * 9 7 5 35 35 H 1.09004 * 109.46906 * 180.02562 * 9 7 5 36 36 H 1.08996 * 109.47333 * 299.99970 * 9 7 5 37 37 H 1.08003 * 120.03670 * 0.02562 * 14 13 11 38 38 H 1.08005 * 119.96873 * 180.20783 * 15 14 13 39 39 H 0.96995 * 119.99901 * 33.66973 * 17 16 15 40 40 H 0.96991 * 120.00501 * 179.97438 * 23 22 20 41 41 H 1.08001 * 119.96411 * 179.97438 * 28 16 15 42 42 H 1.07993 * 120.03567 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4289 -1.3132 5 6 4.4593 0.5053 -1.5476 6 8 5.2474 0.2200 -0.6711 7 6 4.9613 0.9463 -2.8983 8 1 4.5267 1.9138 -3.1493 9 6 4.5564 -0.0841 -3.9542 10 8 6.4085 1.0602 -2.8631 11 6 6.9699 1.9760 -3.6767 12 8 6.2695 2.6610 -4.3954 13 6 8.4345 2.1477 -3.6939 14 6 9.2414 1.3649 -2.8624 15 6 10.6080 1.5246 -2.8836 16 6 11.1869 2.4713 -3.7253 17 7 12.5680 2.6338 -3.7408 18 6 13.1007 3.8538 -3.9518 19 8 12.3761 4.8285 -4.0328 20 6 14.5487 4.0064 -4.0833 21 1 15.1915 3.1415 -4.0117 22 6 15.1025 5.2748 -4.3022 23 7 14.3250 6.3210 -4.3883 24 14 16.9526 5.4697 -4.4709 25 1 17.3371 5.3290 -5.8983 26 1 17.3558 6.8119 -3.9797 27 1 17.6358 4.4232 -3.6687 28 6 10.3854 3.2558 -4.5510 29 6 9.0186 3.0973 -4.5379 30 1 -1.0501 0.0001 0.0002 31 1 3.0098 -1.0046 0.2128 32 1 3.0090 0.6878 0.7643 33 1 2.5037 0.6574 -2.0141 34 1 3.4700 -0.1697 -3.9807 35 1 4.9199 0.2346 -4.9312 36 1 4.9910 -1.0516 -3.7032 37 1 8.7928 0.6331 -2.2068 38 1 11.2321 0.9180 -2.2441 39 1 13.1479 1.8692 -3.5998 40 1 14.7083 7.1991 -4.5394 41 1 10.8372 3.9893 -5.2024 42 1 8.3977 3.7062 -5.1781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023376124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:40 Heat of formation + Delta-G solvation = -74.287843 kcal Electronic energy + Delta-G solvation = -27807.420970 eV Core-core repulsion = 23526.424028 eV Total energy + Delta-G solvation = -4280.996942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86219 -39.83458 -39.07804 -37.07309 -36.37477 -35.83202 -33.68825 -33.36170 -32.58108 -32.01915 -30.52784 -29.49315 -27.69868 -26.58485 -25.00063 -23.36850 -22.41543 -21.12874 -20.68243 -19.89404 -19.29658 -18.15809 -17.69871 -17.43247 -16.75274 -16.41350 -16.17632 -15.95954 -15.64757 -15.57618 -14.70390 -14.53158 -14.22578 -14.04982 -13.94557 -13.77684 -13.49893 -13.21291 -13.04236 -12.80240 -12.70676 -12.63615 -12.15037 -11.88774 -11.85701 -11.36382 -11.35231 -11.15403 -11.04238 -10.96813 -10.80833 -10.67771 -10.43356 -10.40692 -10.04307 -9.60298 -9.50123 -8.99699 -8.61276 -7.89461 -7.30912 -6.44178 -4.92374 1.11770 1.71115 1.88069 2.14033 2.24491 2.44824 2.80394 3.03193 3.10104 3.13409 3.20021 3.70229 3.91350 4.12773 4.18100 4.41410 4.46910 4.49261 4.63381 4.80380 5.00567 5.04567 5.18797 5.28846 5.30421 5.32478 5.38961 5.52572 5.68061 5.77829 5.78422 5.92522 6.08610 6.26328 6.45683 6.61061 6.83618 6.89213 6.90885 6.95604 7.16728 7.21879 7.58918 7.70000 7.86634 7.88807 8.02956 8.75337 9.04700 10.25078 10.45863 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.001685 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.378146 B =16615.669005 C =16811.979044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.727 5.727 5 C 0.521 3.479 6 O -0.509 6.509 7 C 0.071 3.929 8 H 0.112 0.888 9 C -0.165 4.165 10 O -0.326 6.326 11 C 0.519 3.481 12 O -0.520 6.520 13 C -0.189 4.189 14 C -0.032 4.032 15 C -0.196 4.196 16 C 0.238 3.762 17 N -0.694 5.694 18 C 0.537 3.463 19 O -0.554 6.554 20 C -0.535 4.535 21 H 0.074 0.926 22 C 0.086 3.914 23 N -0.756 5.756 24 Si 0.915 3.085 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.263 1.263 28 C -0.148 4.148 29 C -0.027 4.027 30 H 0.223 0.777 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.405 0.595 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.397 0.603 40 H 0.274 0.726 41 H 0.148 0.852 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.586 -13.860 3.696 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.212 4.212 3 C 0.110 3.890 4 N -0.383 5.383 5 C 0.306 3.694 6 O -0.382 6.382 7 C 0.012 3.988 8 H 0.130 0.870 9 C -0.222 4.222 10 O -0.243 6.243 11 C 0.367 3.633 12 O -0.410 6.410 13 C -0.191 4.191 14 C -0.051 4.051 15 C -0.217 4.217 16 C 0.136 3.864 17 N -0.335 5.335 18 C 0.345 3.655 19 O -0.436 6.436 20 C -0.571 4.571 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.384 5.384 24 Si 0.739 3.261 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.187 1.187 28 C -0.169 4.169 29 C -0.046 4.046 30 H 0.239 0.761 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.240 0.760 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.165 0.835 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.581 -12.904 4.045 25.468 hybrid contribution 0.480 -0.082 -0.262 0.553 sum -21.101 -12.986 3.783 25.064 Atomic orbital electron populations 1.25070 0.95971 1.00234 0.97193 1.22866 0.94188 1.01251 1.02872 1.18076 0.83167 1.02103 0.85629 1.45833 1.06771 1.70528 1.15149 1.20215 0.82060 0.77868 0.89261 1.90776 1.54859 1.46781 1.45790 1.22300 0.80805 1.02280 0.93372 0.87032 1.22159 1.02267 0.99100 0.98680 1.86712 1.20878 1.55928 1.60755 1.21399 0.89655 0.75984 0.76263 1.90789 1.63873 1.45406 1.40900 1.18706 0.87702 1.05599 1.07121 1.21092 0.92826 0.96049 0.95116 1.20874 0.94834 1.04062 1.01960 1.18314 0.85761 0.92339 0.89971 1.44319 1.02764 1.12992 1.73411 1.18475 0.89804 0.79753 0.77480 1.90658 1.62041 1.37004 1.53860 1.20874 0.89822 0.94573 1.51827 0.90787 1.25758 0.99990 0.95219 0.92641 1.69968 1.36404 0.99412 1.32572 0.86246 0.82187 0.78448 0.79253 1.19493 1.20222 1.18707 1.21286 0.92366 1.02389 1.00864 1.21032 0.94575 0.93894 0.95140 0.76056 0.88699 0.88706 0.75988 0.90348 0.90207 0.90692 0.84922 0.85520 0.76874 0.91535 0.83451 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 19.25 29.55 0.57 -0.25 16 2 C -0.21 -1.33 13.46 -37.13 -0.50 -1.83 16 3 C 0.23 1.58 6.15 -6.83 -0.04 1.54 16 4 N -0.73 -5.22 5.50 -63.16 -0.35 -5.57 16 5 C 0.52 5.59 7.18 -10.98 -0.08 5.51 16 6 O -0.51 -7.51 16.51 -14.05 -0.23 -7.74 16 7 C 0.07 0.77 2.98 -27.88 -0.08 0.68 16 8 H 0.11 1.13 7.16 -51.93 -0.37 0.76 16 9 C -0.16 -1.29 9.50 37.16 0.35 -0.94 16 10 O -0.33 -4.69 8.66 -47.30 -0.41 -5.10 16 11 C 0.52 8.34 7.86 34.49 0.27 8.62 16 12 O -0.52 -8.91 15.60 -19.27 -0.30 -9.21 16 13 C -0.19 -3.21 5.88 -104.94 -0.62 -3.82 16 14 C -0.03 -0.50 9.60 -39.22 -0.38 -0.88 16 15 C -0.20 -3.25 9.94 -39.43 -0.39 -3.64 16 16 C 0.24 4.75 6.27 -83.81 -0.53 4.22 16 17 N -0.69 -14.72 5.30 -11.18 -0.06 -14.78 16 18 C 0.54 14.29 7.46 -13.06 -0.10 14.19 16 19 O -0.55 -16.68 12.69 5.17 0.07 -16.62 16 20 C -0.54 -14.05 9.54 -35.68 -0.34 -14.39 16 21 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 22 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 23 N -0.76 -21.35 11.82 55.55 0.66 -20.69 16 24 Si 0.91 18.93 29.56 -169.99 -5.02 13.91 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 28 C -0.15 -3.06 8.62 -39.43 -0.34 -3.40 16 29 C -0.03 -0.50 9.58 -39.22 -0.38 -0.87 16 30 H 0.22 0.34 7.80 -54.09 -0.42 -0.09 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.41 1.90 8.23 -40.82 -0.34 1.57 16 34 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.13 1.86 7.60 -52.48 -0.40 1.46 16 38 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.40 7.06 8.79 -40.82 -0.36 6.70 16 40 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 41 H 0.15 3.43 6.41 -52.49 -0.34 3.10 16 42 H 0.13 2.25 7.64 -52.49 -0.40 1.85 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -35.50 384.07 -7.23 -42.73 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.70 Total: 10.39 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.67 Total: 6.89 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.25 Total: -41.03 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.88 Total: -38.67 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.50 -7.23 -42.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023376124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.555 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds