Wall clock time and date at job start Wed Apr 1 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47243 * 108.05092 * 3 2 1 5 5 C 1.34780 * 120.00387 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99598 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00003 * 180.02562 * 5 4 3 8 8 H 1.08996 * 109.47126 * 54.99837 * 7 5 4 9 9 C 1.52997 * 109.46855 * 294.99739 * 7 5 4 10 10 O 1.45206 * 109.46761 * 175.00150 * 7 5 4 11 11 C 1.34751 * 116.99557 * 209.99829 * 10 7 5 12 12 O 1.21507 * 120.00309 * 0.02562 * 11 10 7 13 13 C 1.47470 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.39832 * 120.06435 * 359.72880 * 13 11 10 15 15 C 1.37605 * 119.92983 * 179.80750 * 14 13 11 16 16 C 1.39271 * 120.06688 * 0.44127 * 15 14 13 17 17 N 1.39076 * 119.93127 * 179.76333 * 16 15 14 18 18 C 1.34785 * 119.99714 * 213.66631 * 17 16 15 19 19 O 1.21718 * 120.00138 * 5.28764 * 18 17 16 20 20 C 1.46198 * 119.99612 * 185.28100 * 18 17 16 21 21 H 1.07999 * 120.00078 * 0.02562 * 20 18 17 22 22 C 1.40123 * 119.99761 * 180.02562 * 20 18 17 23 23 N 1.30636 * 120.00352 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99996 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47349 * 90.00092 * 24 22 20 26 26 H 1.48501 * 109.46959 * 210.00099 * 24 22 20 27 27 H 1.48501 * 109.46890 * 329.99951 * 24 22 20 28 28 C 1.39272 * 120.13290 * 359.78943 * 16 15 14 29 29 C 1.37603 * 120.07093 * 359.97438 * 28 16 15 30 30 H 4.40645 * 5.51369 * 180.02562 * 4 1 2 31 31 H 1.09002 * 109.46986 * 348.05231 * 3 2 1 32 32 H 1.09001 * 109.47070 * 228.05301 * 3 2 1 33 33 H 0.97005 * 119.99828 * 0.02562 * 4 3 2 34 34 H 1.09000 * 109.47420 * 60.00652 * 9 7 5 35 35 H 1.09004 * 109.46906 * 180.02562 * 9 7 5 36 36 H 1.08996 * 109.47333 * 299.99970 * 9 7 5 37 37 H 1.08003 * 120.03670 * 0.02562 * 14 13 11 38 38 H 1.08005 * 119.96873 * 180.20783 * 15 14 13 39 39 H 0.96995 * 119.99901 * 33.66973 * 17 16 15 40 40 H 0.96991 * 120.00501 * 179.97438 * 23 22 20 41 41 H 1.08001 * 119.96411 * 179.97438 * 28 16 15 42 42 H 1.07993 * 120.03567 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4289 -1.3132 5 6 4.4593 0.5053 -1.5476 6 8 5.2474 0.2200 -0.6711 7 6 4.9613 0.9463 -2.8983 8 1 4.5267 1.9138 -3.1493 9 6 4.5564 -0.0841 -3.9542 10 8 6.4085 1.0602 -2.8631 11 6 6.9699 1.9760 -3.6767 12 8 6.2695 2.6610 -4.3954 13 6 8.4345 2.1477 -3.6939 14 6 9.2414 1.3649 -2.8624 15 6 10.6080 1.5246 -2.8836 16 6 11.1869 2.4713 -3.7253 17 7 12.5680 2.6338 -3.7408 18 6 13.1007 3.8538 -3.9518 19 8 12.3761 4.8285 -4.0328 20 6 14.5487 4.0064 -4.0833 21 1 15.1915 3.1415 -4.0117 22 6 15.1025 5.2748 -4.3022 23 7 14.3250 6.3210 -4.3883 24 14 16.9526 5.4697 -4.4709 25 1 17.3371 5.3290 -5.8983 26 1 17.3558 6.8119 -3.9797 27 1 17.6358 4.4232 -3.6687 28 6 10.3854 3.2558 -4.5510 29 6 9.0186 3.0973 -4.5379 30 1 -1.0501 0.0001 0.0002 31 1 3.0098 -1.0046 0.2128 32 1 3.0090 0.6878 0.7643 33 1 2.5037 0.6574 -2.0141 34 1 3.4700 -0.1697 -3.9807 35 1 4.9199 0.2346 -4.9312 36 1 4.9910 -1.0516 -3.7032 37 1 8.7928 0.6331 -2.2068 38 1 11.2321 0.9180 -2.2441 39 1 13.1479 1.8692 -3.5998 40 1 14.7083 7.1991 -4.5394 41 1 10.8372 3.9893 -5.2024 42 1 8.3977 3.7062 -5.1781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023376124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:39 Heat of formation + Delta-G solvation = -98.175129 kcal Electronic energy + Delta-G solvation = -27808.456801 eV Core-core repulsion = 23526.424028 eV Total energy + Delta-G solvation = -4282.032773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97884 -41.01902 -40.48860 -38.73509 -37.58339 -36.57113 -35.43863 -34.58023 -34.03367 -32.77344 -31.96286 -31.03433 -28.48292 -28.27356 -26.00726 -24.70139 -23.84791 -22.45982 -21.73570 -21.42505 -19.91187 -19.61181 -19.19550 -18.37171 -18.05855 -17.59759 -17.51598 -17.20370 -16.94209 -16.49456 -16.13595 -15.72821 -15.63662 -15.24375 -14.94181 -14.83935 -14.64484 -14.42702 -14.31186 -14.24349 -14.04068 -13.61368 -13.54463 -13.35879 -13.13096 -12.79800 -12.77509 -12.73559 -12.19708 -12.03932 -11.99628 -11.82011 -11.73506 -11.50913 -11.18435 -10.92582 -10.90494 -10.26861 -10.13410 -9.85763 -8.96211 -8.39453 -6.97592 -0.30652 0.44092 0.98843 1.31842 1.37549 1.41241 1.48265 1.57731 1.64697 1.81780 2.19912 2.34963 2.45284 2.76515 2.87690 3.31841 3.45150 3.53383 3.62447 3.77281 3.84273 3.89563 3.99858 4.35086 4.42170 4.46757 4.49929 4.57631 4.63141 4.64996 4.98508 5.00838 5.03429 5.07894 5.14136 5.23898 5.25472 5.36287 5.37970 5.66672 5.76620 6.12299 6.23442 6.25643 6.55886 6.61761 6.75713 6.95798 7.25179 8.28946 8.53618 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.031833 B = 0.001685 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.378146 B =16615.669005 C =16811.979044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.249 4.249 3 C 0.233 3.767 4 N -0.708 5.708 5 C 0.525 3.475 6 O -0.555 6.555 7 C 0.064 3.936 8 H 0.119 0.881 9 C -0.159 4.159 10 O -0.332 6.332 11 C 0.526 3.474 12 O -0.533 6.533 13 C -0.186 4.186 14 C -0.021 4.021 15 C -0.177 4.177 16 C 0.211 3.789 17 N -0.686 5.686 18 C 0.525 3.475 19 O -0.602 6.602 20 C -0.561 4.561 21 H 0.097 0.903 22 C 0.030 3.970 23 N -0.811 5.811 24 Si 1.001 2.999 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.246 1.246 28 C -0.168 4.168 29 C -0.029 4.029 30 H 0.253 0.747 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.419 0.581 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.414 0.586 40 H 0.278 0.722 41 H 0.110 0.890 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.755 -16.093 4.477 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.249 4.249 3 C 0.111 3.889 4 N -0.363 5.363 5 C 0.310 3.690 6 O -0.432 6.432 7 C 0.006 3.994 8 H 0.136 0.864 9 C -0.216 4.216 10 O -0.248 6.248 11 C 0.374 3.626 12 O -0.424 6.424 13 C -0.188 4.188 14 C -0.040 4.040 15 C -0.198 4.198 16 C 0.110 3.890 17 N -0.329 5.329 18 C 0.333 3.667 19 O -0.487 6.487 20 C -0.596 4.596 21 H 0.115 0.885 22 C -0.187 4.187 23 N -0.440 5.440 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.169 1.169 28 C -0.189 4.189 29 C -0.048 4.048 30 H 0.269 0.731 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.257 0.743 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.826 -15.208 4.824 27.849 hybrid contribution 0.525 0.512 -0.467 0.869 sum -22.301 -14.696 4.358 27.061 Atomic orbital electron populations 1.25873 0.96707 0.98315 0.95174 1.22875 0.94327 1.03022 1.04707 1.18026 0.84013 1.01917 0.84965 1.45699 1.05815 1.68905 1.15840 1.20213 0.82746 0.77364 0.88652 1.90758 1.56175 1.49275 1.46983 1.22683 0.78689 1.03649 0.94421 0.86386 1.22186 1.04527 0.97924 0.97009 1.86662 1.23329 1.54867 1.59954 1.21096 0.89144 0.76092 0.76278 1.90782 1.64131 1.45982 1.41499 1.18888 0.88879 1.04772 1.06303 1.21387 0.92355 0.95725 0.94522 1.21139 0.95451 1.02529 1.00650 1.18519 0.85048 0.93951 0.91449 1.43796 1.03710 1.12033 1.73357 1.18805 0.90264 0.80648 0.76983 1.90620 1.63103 1.39141 1.55870 1.21437 0.90263 0.95887 1.52053 0.88495 1.27004 1.05875 0.94466 0.91318 1.70133 1.39363 1.00309 1.34181 0.84958 0.74633 0.78746 0.79677 1.18597 1.19912 1.16927 1.21045 0.93581 1.02655 1.01648 1.20995 0.93605 0.94523 0.95712 0.73058 0.88714 0.89383 0.74331 0.86871 0.90937 0.90662 0.82142 0.82218 0.74962 0.91155 0.87233 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 19.25 74.32 1.43 0.43 16 2 C -0.25 -2.67 13.46 31.12 0.42 -2.25 16 3 C 0.23 2.94 6.15 84.57 0.52 3.46 16 4 N -0.71 -8.98 5.50 -472.14 -2.60 -11.58 16 5 C 0.52 10.59 7.18 87.66 0.63 11.22 16 6 O -0.55 -16.05 16.51 15.73 0.26 -15.79 16 7 C 0.06 1.26 2.98 29.85 0.09 1.35 16 8 H 0.12 2.20 7.16 -2.39 -0.02 2.19 16 9 C -0.16 -2.14 9.50 71.98 0.68 -1.45 16 10 O -0.33 -9.06 8.66 -50.25 -0.44 -9.50 16 11 C 0.53 16.39 7.86 70.26 0.55 16.94 16 12 O -0.53 -17.90 15.60 19.81 0.31 -17.59 16 13 C -0.19 -6.20 5.88 -20.07 -0.12 -6.32 16 14 C -0.02 -0.63 9.60 22.51 0.22 -0.41 16 15 C -0.18 -5.58 9.94 22.37 0.22 -5.35 16 16 C 0.21 8.53 6.27 38.49 0.24 8.77 16 17 N -0.69 -29.67 5.30 -307.50 -1.63 -31.30 16 18 C 0.53 29.03 7.46 86.31 0.64 29.68 16 19 O -0.60 -38.42 12.69 -4.41 -0.06 -38.47 16 20 C -0.56 -29.93 9.54 24.80 0.24 -29.69 16 21 H 0.10 4.53 7.85 -2.91 -0.02 4.50 16 22 C 0.03 1.60 5.50 85.33 0.47 2.07 16 23 N -0.81 -47.63 11.82 21.85 0.26 -47.37 16 24 Si 1.00 38.81 29.56 68.60 2.03 40.84 16 25 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 26 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 27 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 28 C -0.17 -7.32 8.62 22.37 0.19 -7.13 16 29 C -0.03 -1.10 9.58 22.51 0.22 -0.89 16 30 H 0.25 -0.20 7.80 -4.41 -0.03 -0.23 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.42 2.92 8.23 -92.70 -0.76 2.16 16 34 H 0.11 0.71 7.92 -2.39 -0.02 0.69 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.11 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.16 3.97 7.60 -2.91 -0.02 3.95 16 38 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.41 14.57 8.79 -92.71 -0.82 13.75 16 40 H 0.28 14.82 8.29 -92.71 -0.77 14.05 16 41 H 0.11 5.60 6.41 -2.91 -0.02 5.58 16 42 H 0.13 4.83 7.64 -2.91 -0.02 4.80 16 Total: -1.00 -81.52 384.07 4.30 -77.22 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.48 Total: 33.13 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 6.65 Total: 20.42 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -3.97 Total: -90.25 kcal Atomic # 8 Polarization: -81.43 SS G_CDS: 0.08 Total: -81.35 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -81.52 4.30 -77.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023376124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.956 kcal (2) G-P(sol) polarization free energy of solvation -81.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds