Wall clock time and date at job start Wed Apr 1 2020 02:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35977 * 117.00392 * 2 1 4 4 C 1.38729 * 120.00062 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.00040 * 179.70233 * 4 3 2 6 6 C 1.38720 * 120.00012 * 0.54632 * 5 4 3 7 7 O 1.35985 * 119.99826 * 179.72156 * 6 5 4 8 8 C 1.42898 * 117.00161 * 359.73276 * 7 6 5 9 9 C 1.38678 * 119.99843 * 359.45462 * 6 5 4 10 10 C 1.50694 * 119.99754 * 180.29379 * 9 6 5 11 11 N 1.46503 * 109.47413 * 79.99977 * 10 9 6 12 12 S 1.65593 * 120.00451 * 164.42755 * 11 10 9 13 13 O 1.42102 * 106.40677 * 176.27120 * 12 11 10 14 14 O 1.42104 * 106.40234 * 309.18983 * 12 11 10 15 15 N 1.65595 * 107.22110 * 62.73122 * 12 11 10 16 16 C 1.46501 * 120.00092 * 273.06403 * 15 12 11 17 17 C 1.46496 * 120.00350 * 93.05892 * 15 12 11 18 18 C 1.50699 * 109.47150 * 95.55822 * 17 15 12 19 19 H 1.08005 * 119.99966 * 4.95639 * 18 17 15 20 20 C 1.37881 * 120.00223 * 184.96119 * 18 17 15 21 21 N 1.31518 * 119.99684 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00160 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47093 * 89.99451 * 22 20 18 24 24 H 1.48500 * 109.47290 * 210.00334 * 22 20 18 25 25 H 1.48503 * 109.47058 * 330.00053 * 22 20 18 26 26 C 1.38151 * 120.00154 * 0.27248 * 9 6 5 27 27 H 1.08996 * 109.47537 * 300.00207 * 1 2 3 28 28 H 1.09007 * 109.47017 * 59.99877 * 1 2 3 29 29 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99066 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.99847 * 180.29899 * 5 4 3 32 32 H 1.08991 * 109.47327 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.46590 * 299.99823 * 8 7 6 34 34 H 1.09000 * 109.47282 * 59.99370 * 8 7 6 35 35 H 1.09004 * 109.47263 * 199.99334 * 10 9 6 36 36 H 1.09000 * 109.47988 * 320.00075 * 10 9 6 37 37 H 0.97007 * 119.99406 * 344.42619 * 11 10 9 38 38 H 1.09004 * 109.46863 * 89.99539 * 16 15 12 39 39 H 1.09001 * 109.47332 * 209.99501 * 16 15 12 40 40 H 1.08999 * 109.47313 * 329.99955 * 16 15 12 41 41 H 1.09001 * 109.47782 * 215.55709 * 17 15 12 42 42 H 1.09001 * 109.47071 * 335.55954 * 17 15 12 43 43 H 0.96999 * 119.99203 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.00187 * 179.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3751 0.0005 5 6 1.9180 3.6055 0.0068 6 6 3.3033 3.6781 0.0010 7 8 3.9206 4.8897 0.0014 8 6 3.0807 6.0458 0.0020 9 6 4.0585 2.5150 0.0004 10 6 5.5633 2.5938 0.0009 11 7 6.0382 2.8580 1.3614 12 16 7.6313 2.6173 1.7438 13 8 7.7889 3.0402 3.0913 14 8 7.9579 1.3085 1.2968 15 7 8.5211 3.6632 0.8184 16 6 8.9434 3.2718 -0.5287 17 6 8.8859 4.9800 1.3466 18 6 10.2688 4.9168 1.9422 19 1 10.8523 4.0119 1.8578 20 6 10.7892 6.0142 2.5949 21 7 11.9959 5.9588 3.1150 22 14 9.7798 7.5791 2.7416 23 1 8.9722 7.5323 3.9869 24 1 10.6891 8.7524 2.7849 25 1 8.8756 7.6967 1.5695 26 6 3.4312 1.2841 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2124 2.3184 0.0005 31 1 1.3298 4.5113 0.0120 32 1 3.6985 6.9437 0.0018 33 1 2.4514 6.0380 -0.8880 34 1 2.4515 6.0374 0.8919 35 1 5.9768 1.6486 -0.3510 36 1 5.8853 3.3994 -0.6590 37 1 5.4193 3.1740 2.0383 38 1 8.1817 3.5698 -1.2492 39 1 9.8854 3.7636 -0.7715 40 1 9.0773 2.1907 -0.5678 41 1 8.8712 5.7123 0.5394 42 1 8.1720 5.2733 2.1163 43 1 12.3621 6.7310 3.5738 44 1 4.0194 0.3783 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027971937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:12 Heat of formation + Delta-G solvation = -142.146009 kcal Electronic energy + Delta-G solvation = -28702.451851 eV Core-core repulsion = 24553.956309 eV Total energy + Delta-G solvation = -4148.495542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52351 -39.90240 -38.33382 -37.72104 -37.27240 -36.86277 -35.99286 -34.48952 -32.22284 -30.71230 -30.25264 -28.37491 -27.72168 -26.83309 -26.48450 -23.81946 -23.22892 -22.30063 -20.43510 -19.27633 -19.10520 -18.70332 -18.51803 -18.08757 -17.78562 -17.40929 -16.76880 -16.48634 -16.35957 -16.01318 -15.65686 -15.44588 -15.26889 -15.02273 -14.59892 -14.49501 -14.29778 -14.09601 -13.73948 -13.67942 -13.53256 -13.39925 -13.20635 -13.14385 -13.08975 -12.97340 -12.75689 -12.41486 -12.39487 -12.33508 -12.22536 -12.01140 -11.69106 -11.60815 -11.32303 -10.76831 -10.51995 -10.05082 -9.74236 -8.71310 -8.27959 -6.33487 -0.41067 0.19787 0.44477 1.37258 1.42238 1.50528 2.04311 2.35570 2.37145 2.48083 2.58169 2.76959 3.06488 3.42065 3.63193 3.75778 4.02860 4.04506 4.09822 4.25843 4.37444 4.43609 4.43883 4.45955 4.50037 4.55559 4.70395 4.74590 4.76728 4.80682 4.82515 4.88877 4.92157 5.09536 5.13280 5.23731 5.29566 5.36996 5.49911 5.57633 5.74143 6.07876 6.32565 6.36070 6.54593 6.69490 7.29664 8.89598 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003198 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.985681 B = 8753.965588 C = 9815.537377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.078 3.922 4 C -0.157 4.157 5 C -0.169 4.169 6 C 0.100 3.900 7 O -0.328 6.328 8 C 0.017 3.983 9 C -0.102 4.102 10 C 0.167 3.833 11 N -1.110 6.110 12 S 2.799 3.201 13 O -1.011 7.011 14 O -1.009 7.009 15 N -0.997 5.997 16 C 0.085 3.915 17 C 0.237 3.763 18 C -0.544 4.544 19 H 0.029 0.971 20 C 0.006 3.994 21 N -0.949 5.949 22 Si 0.944 3.056 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.227 1.227 26 C -0.109 4.109 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.419 0.581 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.267 0.733 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.128 -3.338 -12.117 32.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.033 3.967 4 C -0.176 4.176 5 C -0.187 4.187 6 C 0.053 3.947 7 O -0.242 6.242 8 C -0.077 4.077 9 C -0.104 4.104 10 C 0.042 3.958 11 N -0.873 5.873 12 S 2.807 3.193 13 O -0.995 6.995 14 O -0.992 6.992 15 N -0.839 5.839 16 C -0.060 4.060 17 C 0.112 3.888 18 C -0.583 4.583 19 H 0.047 0.953 20 C -0.192 4.192 21 N -0.589 5.589 22 Si 0.766 3.234 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.150 1.150 26 C -0.129 4.129 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -29.217 -4.083 -11.577 31.691 hybrid contribution -0.354 1.053 0.611 1.268 sum -29.571 -3.030 -10.966 31.684 Atomic orbital electron populations 1.23324 0.76544 1.05455 1.02258 1.86071 1.23341 1.26554 1.89264 1.18974 0.92048 0.85147 1.00509 1.21360 1.01333 0.90907 1.03961 1.21307 0.92543 0.99611 1.05258 1.18910 0.91456 0.85388 0.98907 1.86152 1.36666 1.12653 1.88692 1.23322 0.96271 0.85746 1.02351 1.18872 0.94505 0.90631 1.06430 1.20108 0.90727 1.02562 0.82415 1.55796 1.27382 1.84572 1.19550 1.01195 0.73158 0.72864 0.72120 1.93569 1.85971 1.83208 1.36744 1.93503 1.84101 1.38583 1.83044 1.57271 1.67878 1.30318 1.28397 1.21667 1.01955 1.00815 0.81611 1.19184 0.93699 0.81243 0.94661 1.21735 1.01084 0.99608 1.35916 0.95274 1.25957 0.96150 1.03013 0.94090 1.70077 1.18227 1.32210 1.38372 0.85775 0.79215 0.77792 0.80634 1.19687 1.20323 1.14996 1.20316 0.92240 0.97446 1.02873 0.91772 0.91435 0.86744 0.82437 0.82439 0.87414 0.91097 0.91659 0.89276 0.89469 0.74574 0.89856 0.91150 0.90952 0.92562 0.94866 0.92366 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.11 10.50 -93.29 -0.98 -7.09 16 3 C 0.08 1.49 6.69 22.49 0.15 1.64 16 4 C -0.16 -2.29 9.03 22.36 0.20 -2.08 16 5 C -0.17 -2.55 9.03 22.35 0.20 -2.35 16 6 C 0.10 2.00 6.66 22.49 0.15 2.15 16 7 O -0.33 -6.71 9.73 -93.39 -0.91 -7.62 16 8 C 0.02 0.21 9.81 113.37 1.11 1.33 16 9 C -0.10 -2.27 5.29 -19.78 -0.10 -2.37 16 10 C 0.17 4.09 6.04 85.63 0.52 4.60 16 11 N -1.11 -32.89 6.04 -190.79 -1.15 -34.04 16 12 S 2.80 112.51 6.09 -56.49 -0.34 112.17 16 13 O -1.01 -49.97 16.99 -128.00 -2.18 -52.14 16 14 O -1.01 -42.98 16.34 -128.00 -2.09 -45.07 16 15 N -1.00 -40.54 3.23 -543.22 -1.75 -42.29 16 16 C 0.08 2.76 10.69 127.77 1.37 4.13 16 17 C 0.24 11.13 4.16 85.63 0.36 11.49 16 18 C -0.54 -32.24 9.93 25.60 0.25 -31.99 16 19 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 20 C 0.01 0.33 5.47 84.66 0.46 0.79 16 21 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 22 Si 0.94 43.55 27.37 68.60 1.88 45.43 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.23 -9.06 6.69 99.48 0.67 -8.40 16 26 C -0.11 -2.36 9.60 22.35 0.21 -2.15 16 27 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 28 H 0.07 0.40 7.66 -2.38 -0.02 0.38 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.16 1.32 6.29 -2.91 -0.02 1.31 16 31 H 0.16 1.48 6.29 -2.91 -0.02 1.46 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 0.60 7.67 -2.38 -0.02 0.58 16 34 H 0.06 0.64 7.65 -2.39 -0.02 0.62 16 35 H 0.09 2.08 7.66 -2.38 -0.02 2.06 16 36 H 0.09 1.97 7.76 -2.39 -0.02 1.95 16 37 H 0.42 11.50 8.65 -96.74 -0.84 10.66 16 38 H 0.08 2.00 8.06 -2.38 -0.02 1.98 16 39 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 40 H 0.07 2.29 7.05 -2.39 -0.02 2.28 16 41 H 0.06 2.39 7.51 -2.39 -0.02 2.37 16 42 H 0.03 1.56 6.66 -2.39 -0.02 1.54 16 43 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 44 H 0.14 2.94 8.04 -2.91 -0.02 2.91 16 Total: -1.00 -83.85 378.70 -1.08 -84.93 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.15 Total: 19.92 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 6.00 Total: -13.53 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -2.61 Total: -137.00 kcal Atomic # 8 Polarization: -105.76 SS G_CDS: -6.15 Total: -111.91 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 16 Polarization: 112.51 SS G_CDS: -0.34 Total: 112.17 kcal Total: -83.85 -1.08 -84.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027971937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.213 kcal (2) G-P(sol) polarization free energy of solvation -83.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds