Wall clock time and date at job start Wed Apr 1 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35978 * 117.00235 * 2 1 4 4 C 1.38694 * 119.99974 * 0.27905 * 3 2 1 5 5 C 1.38135 * 119.99892 * 180.23787 * 4 3 2 6 6 C 1.38696 * 120.00191 * 359.48596 * 5 4 3 7 7 O 1.35976 * 120.00048 * 180.28213 * 6 5 4 8 8 C 1.42903 * 116.99970 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47511 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.46812 * 64.99832 * 9 8 7 11 11 S 1.65607 * 119.99588 * 164.47065 * 10 9 8 12 12 O 1.42095 * 106.39765 * 176.33366 * 11 10 9 13 13 O 1.42101 * 106.40332 * 309.25101 * 11 10 9 14 14 N 1.65597 * 107.21985 * 62.79437 * 11 10 9 15 15 C 1.46499 * 119.99716 * 273.13896 * 14 11 10 16 16 C 1.46494 * 120.00192 * 93.13556 * 14 11 10 17 17 C 1.50701 * 109.47004 * 95.58195 * 16 14 11 18 18 H 1.07993 * 119.99971 * 4.71426 * 17 16 14 19 19 C 1.37883 * 120.00046 * 184.72428 * 17 16 14 20 20 N 1.31517 * 119.99668 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00091 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47117 * 119.99395 * 21 19 17 24 24 H 1.48504 * 109.47239 * 239.99608 * 21 19 17 25 25 C 1.38705 * 119.99552 * 0.25696 * 6 5 4 26 26 C 1.38129 * 120.00288 * 0.02562 * 25 6 5 27 27 H 1.08995 * 109.47143 * 59.99516 * 1 2 3 28 28 H 1.08996 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46781 * 299.99578 * 1 2 3 30 30 H 1.08001 * 120.00136 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99813 * 179.76867 * 5 4 3 32 32 H 1.09003 * 109.47135 * 299.99797 * 8 7 6 33 33 H 1.09003 * 109.47195 * 59.99799 * 8 7 6 34 34 H 1.09000 * 109.47568 * 184.99806 * 9 8 7 35 35 H 1.09002 * 109.47292 * 305.00329 * 9 8 7 36 36 H 0.96995 * 120.00188 * 344.47117 * 10 9 8 37 37 H 1.09004 * 109.47694 * 89.99825 * 15 14 11 38 38 H 1.08999 * 109.46953 * 210.00219 * 15 14 11 39 39 H 1.09007 * 109.47437 * 329.99816 * 15 14 11 40 40 H 1.09004 * 109.47288 * 215.58330 * 16 14 11 41 41 H 1.09003 * 109.47226 * 335.57702 * 16 14 11 42 42 H 0.96998 * 119.99894 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.99796 * 180.02562 * 25 6 5 44 44 H 1.07999 * 120.00194 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2911 2.3748 0.0058 5 6 1.9182 3.6055 0.0009 6 6 3.3033 3.6781 0.0008 7 8 3.9206 4.8897 0.0017 8 6 5.3496 4.8896 0.0022 9 6 5.8598 6.3321 0.0025 10 7 5.4718 6.9869 1.2544 11 16 6.1986 8.4044 1.7071 12 8 5.5527 8.8226 2.9017 13 8 7.5995 8.1835 1.6174 14 7 5.8286 9.5348 0.5550 15 6 6.6656 9.6633 -0.6404 16 6 4.6644 10.4063 0.7312 17 6 5.1028 11.7134 1.3398 18 1 6.1526 11.9084 1.5018 19 6 4.1637 12.6602 1.6901 20 7 2.8853 12.4228 1.4925 21 14 4.7071 14.2800 2.4452 22 1 6.1873 14.2998 2.5619 23 1 4.2632 15.4028 1.5805 24 1 4.1026 14.4250 3.7938 25 6 4.0586 2.5148 0.0004 26 6 3.4315 1.2841 -0.0006 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2126 2.3183 0.0108 31 1 1.3300 4.5113 0.0017 32 1 5.7127 4.3753 0.8920 33 1 5.7133 4.3763 -0.8880 34 1 6.9461 6.3334 -0.0866 35 1 5.4254 6.8713 -0.8393 36 1 4.7892 6.5902 1.8179 37 1 6.2846 9.0071 -1.4231 38 1 6.6444 10.6957 -0.9896 39 1 7.6907 9.3827 -0.3982 40 1 4.2010 10.5939 -0.2375 41 1 3.9442 9.9218 1.3906 42 1 2.2245 13.0887 1.7392 43 1 5.1372 2.5713 0.0007 44 1 4.0197 0.3783 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030438281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:21 Heat of formation + Delta-G solvation = -119.213041 kcal Electronic energy + Delta-G solvation = -27618.099286 eV Core-core repulsion = 23470.598193 eV Total energy + Delta-G solvation = -4147.501094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66128 -39.31701 -36.87860 -36.56099 -35.48806 -35.14242 -34.93726 -32.41562 -31.55287 -29.83721 -28.84694 -27.75663 -27.26317 -25.06080 -23.79437 -22.72260 -22.26588 -21.57266 -19.06975 -18.69233 -17.97574 -17.31815 -16.89599 -16.62937 -16.34598 -16.30371 -16.01374 -15.47176 -15.17131 -15.01531 -14.62170 -14.20212 -13.99968 -13.69150 -13.40800 -13.27426 -13.20470 -12.96271 -12.79906 -12.41617 -12.30212 -12.15719 -12.07427 -11.72744 -11.58971 -11.44312 -11.21747 -11.12736 -11.06216 -10.91629 -10.68359 -10.63697 -10.49205 -10.02529 -9.73349 -9.37718 -9.35191 -8.42969 -8.04802 -7.98282 -6.04620 -4.08688 0.96681 1.21161 1.24897 2.90250 3.04687 3.32071 3.39743 3.44366 3.46293 3.53313 4.14368 4.43611 4.46288 4.51624 4.59877 4.72642 4.80031 4.80296 4.84904 4.97749 5.02669 5.10699 5.11291 5.27369 5.30747 5.38734 5.48729 5.63734 5.68217 5.72247 5.93109 6.00505 6.03235 6.06779 6.28334 6.30262 6.57337 6.99300 7.11015 7.25369 7.30353 7.43846 7.64876 7.92969 8.22585 8.94175 9.56548 11.04061 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.002265 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.526074 B =12358.164266 C =13383.678521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.085 3.915 4 C -0.167 4.167 5 C -0.111 4.111 6 C 0.099 3.901 7 O -0.307 6.307 8 C 0.053 3.947 9 C 0.124 3.876 10 N -1.133 6.133 11 S 2.783 3.217 12 O -0.962 6.962 13 O -1.000 7.000 14 N -0.995 5.995 15 C 0.093 3.907 16 C 0.256 3.744 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.282 1.282 25 C -0.171 4.171 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.416 0.584 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.136 0.864 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 -23.880 -7.192 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.041 3.959 4 C -0.186 4.186 5 C -0.129 4.129 6 C 0.054 3.946 7 O -0.221 6.221 8 C -0.024 4.024 9 C -0.002 4.002 10 N -0.892 5.892 11 S 2.790 3.210 12 O -0.946 6.946 13 O -0.983 6.983 14 N -0.838 5.838 15 C -0.054 4.054 16 C 0.134 3.866 17 C -0.569 4.569 18 H 0.079 0.921 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.190 4.190 26 C -0.131 4.131 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.249 0.751 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.153 0.847 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.769 -23.575 -6.530 24.475 hybrid contribution -0.523 0.706 0.260 0.916 sum -1.292 -22.869 -6.270 23.748 Atomic orbital electron populations 1.23038 0.78503 1.03856 1.01383 1.86061 1.21248 1.26771 1.89384 1.18900 0.92285 0.84245 1.00506 1.21072 1.00127 0.91399 1.05961 1.20300 0.91617 0.98205 1.02824 1.18912 0.92251 0.84378 0.99037 1.86157 1.20909 1.26283 1.88785 1.23058 0.78971 0.98108 1.02270 1.21261 1.00042 0.91470 0.87475 1.56216 1.57308 1.43432 1.32280 1.01915 0.73249 0.72242 0.73565 1.93645 1.76373 1.80347 1.44245 1.93519 1.31531 1.85971 1.87266 1.57584 1.40592 1.49828 1.35796 1.21384 0.93764 1.03247 0.86974 1.19074 0.81410 0.88544 0.97539 1.21540 0.93688 1.00524 1.41188 0.92101 1.24949 0.94787 0.98850 0.95496 1.69933 1.00215 1.35259 1.47935 0.86455 0.78944 0.83100 0.79010 1.19656 1.20984 1.20800 1.21105 1.00246 0.91402 1.06201 1.20188 0.91371 0.98008 1.03500 0.92685 0.88341 0.92644 0.84825 0.84531 0.91055 0.90667 0.88613 0.90608 0.75070 0.94346 0.90380 0.91613 0.95001 0.93886 0.92747 0.84672 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.96 10.50 -19.67 -0.21 -3.17 16 3 C 0.09 0.84 6.69 -39.24 -0.26 0.58 16 4 C -0.17 -1.55 9.03 -39.45 -0.36 -1.91 16 5 C -0.11 -1.16 9.98 -39.45 -0.39 -1.56 16 6 C 0.10 1.09 6.69 -39.24 -0.26 0.83 16 7 O -0.31 -3.60 9.94 -19.66 -0.20 -3.79 16 8 C 0.05 0.49 4.93 37.16 0.18 0.67 16 9 C 0.12 1.39 6.64 -4.04 -0.03 1.36 16 10 N -1.13 -16.46 6.02 -10.61 -0.06 -16.53 16 11 S 2.78 54.23 6.09 -107.50 -0.65 53.57 16 12 O -0.96 -23.08 16.99 -57.17 -0.97 -24.05 16 13 O -1.00 -20.19 16.34 -57.17 -0.93 -21.13 16 14 N -1.00 -20.37 3.23 -123.05 -0.40 -20.77 16 15 C 0.09 1.54 10.69 59.85 0.64 2.18 16 16 C 0.26 6.45 5.10 -5.20 -0.03 6.43 16 17 C -0.53 -14.96 9.38 -34.44 -0.32 -15.29 16 18 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 21 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.17 -1.60 9.03 -39.45 -0.36 -1.95 16 26 C -0.11 -1.05 9.98 -39.45 -0.39 -1.44 16 27 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 30 H 0.13 0.94 6.29 -52.49 -0.33 0.61 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 33 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 34 H 0.10 0.95 7.79 -51.93 -0.40 0.54 16 35 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 36 H 0.42 5.71 8.51 -34.48 -0.29 5.42 16 37 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 38 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 39 H 0.07 1.01 7.05 -51.93 -0.37 0.65 16 40 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 41 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.14 0.97 6.29 -52.49 -0.33 0.64 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -36.09 383.39 -8.81 -44.90 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.19 Total: 1.15 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.68 Total: -7.30 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.28 Total: -62.93 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -2.31 Total: -52.14 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 54.23 SS G_CDS: -0.65 Total: 53.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.09 -8.81 -44.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030438281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.318 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds