Wall clock time and date at job start Wed Apr 1 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36001 * 116.99928 * 2 1 4 4 C 1.38558 * 120.07169 * 359.72042 * 3 2 1 5 5 C 1.38248 * 119.99731 * 179.79053 * 4 3 2 6 6 C 1.38243 * 120.14579 * 0.46807 * 5 4 3 7 7 C 1.50701 * 119.92525 * 179.76717 * 6 5 4 8 8 N 1.46500 * 109.46997 * 270.01951 * 7 6 5 9 9 S 1.65601 * 119.99930 * 164.43975 * 8 7 6 10 10 O 1.42101 * 106.40276 * 176.31504 * 9 8 7 11 11 O 1.42100 * 106.40640 * 309.23696 * 9 8 7 12 12 N 1.65602 * 107.21818 * 62.77823 * 9 8 7 13 13 C 1.46506 * 119.99887 * 273.10839 * 12 9 8 14 14 C 1.46498 * 120.00190 * 93.10478 * 12 9 8 15 15 C 1.50699 * 109.46881 * 95.57303 * 14 12 9 16 16 H 1.08001 * 120.00110 * 4.71594 * 15 14 12 17 17 C 1.37880 * 120.00069 * 184.71828 * 15 14 12 18 18 N 1.31516 * 119.99878 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47362 * 59.99938 * 19 17 15 21 21 H 1.48499 * 109.47379 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47355 * 299.99871 * 19 17 15 23 23 C 1.38240 * 120.15035 * 359.78926 * 6 5 4 24 24 C 1.38571 * 119.99464 * 359.97438 * 23 6 5 25 25 O 1.35999 * 120.06988 * 180.02562 * 24 23 6 26 26 C 1.42904 * 117.00096 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.47190 * 299.99985 * 1 2 3 28 28 H 1.09004 * 109.47389 * 59.99792 * 1 2 3 29 29 H 1.08999 * 109.47432 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00134 * 0.02662 * 4 3 2 31 31 H 1.08002 * 119.92197 * 180.21630 * 5 4 3 32 32 H 1.08998 * 109.47213 * 30.02220 * 7 6 5 33 33 H 1.09004 * 109.47343 * 150.02748 * 7 6 5 34 34 H 0.96999 * 120.00844 * 344.44526 * 8 7 6 35 35 H 1.08998 * 109.46763 * 89.99422 * 13 12 9 36 36 H 1.09000 * 109.47166 * 209.99931 * 13 12 9 37 37 H 1.09004 * 109.46886 * 329.99934 * 13 12 9 38 38 H 1.09001 * 109.47110 * 215.56827 * 14 12 9 39 39 H 1.08994 * 109.47191 * 335.57678 * 14 12 9 40 40 H 0.96998 * 119.99839 * 180.02562 * 18 17 15 41 41 H 1.07998 * 120.00484 * 179.97438 * 23 6 5 42 42 H 1.08996 * 109.47008 * 300.00020 * 26 25 24 43 43 H 1.09010 * 109.47023 * 60.00046 * 26 25 24 44 44 H 1.08997 * 109.46919 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0059 5 6 1.9223 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 6 3.9835 5.0244 -0.0015 8 7 4.2041 5.4595 -1.3829 9 16 4.5739 7.0415 -1.7037 10 8 4.8100 7.1227 -3.1026 11 8 3.5967 7.8259 -1.0336 12 7 6.0205 7.3661 -0.9658 13 6 6.0479 7.8015 0.4328 14 6 7.2727 7.2179 -1.7114 15 6 7.6839 8.5543 -2.2735 16 1 7.1159 9.4402 -2.0305 17 6 8.7851 8.6462 -3.0980 18 7 9.4771 7.5675 -3.3936 19 14 9.2943 10.3026 -3.7953 20 1 9.6014 11.2354 -2.6813 21 1 10.5005 10.1326 -4.6446 22 1 8.1862 10.8570 -4.6138 23 6 4.0602 2.5234 -0.0005 24 6 3.4358 1.2864 0.0000 25 8 4.1795 0.1477 0.0010 26 6 5.6003 0.3008 0.0008 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2146 2.3196 -0.0100 31 1 1.3340 4.5115 -0.0025 32 1 3.3536 5.7507 0.5120 33 1 4.9417 4.9468 0.5123 34 1 4.1336 4.8210 -2.1097 35 1 6.1195 6.9298 1.0833 36 1 6.9103 8.4480 0.5953 37 1 5.1341 8.3505 0.6604 38 1 8.0517 6.8493 -1.0439 39 1 7.1282 6.5096 -2.5272 40 1 10.2520 7.6322 -3.9733 41 1 5.1385 2.5841 -0.0006 42 1 5.9065 0.8497 -0.8896 43 1 5.9065 0.8514 0.8904 44 1 6.0715 -0.6821 0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045797003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:17 Heat of formation + Delta-G solvation = -117.844743 kcal Electronic energy + Delta-G solvation = -28245.835006 eV Core-core repulsion = 24098.393246 eV Total energy + Delta-G solvation = -4147.441760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80510 -38.66873 -37.71883 -36.58276 -35.50544 -35.15053 -34.69055 -32.43691 -30.62050 -30.54752 -27.82346 -27.76422 -27.46194 -25.23888 -25.00853 -22.41685 -22.29441 -21.59134 -19.00068 -18.68371 -17.52848 -17.14603 -17.00968 -16.62415 -16.37033 -16.30578 -15.84159 -15.46189 -15.02608 -14.97761 -14.75146 -14.40063 -14.16798 -13.81598 -13.45129 -13.28206 -12.95403 -12.85981 -12.41427 -12.34997 -12.25535 -12.13741 -11.76571 -11.61747 -11.43991 -11.41698 -11.37896 -11.20376 -11.15286 -11.05569 -11.00204 -10.71491 -10.49612 -10.04791 -9.78683 -9.35424 -8.95877 -8.44369 -8.10266 -7.99473 -6.06833 -4.10959 0.93898 1.12495 1.36915 2.99947 3.06670 3.33247 3.35769 3.37192 3.41780 3.68054 4.16130 4.44333 4.45748 4.52789 4.70384 4.84570 4.86360 4.93170 5.01804 5.02616 5.07456 5.15067 5.20100 5.28203 5.29700 5.35593 5.40039 5.54783 5.64342 5.84287 5.93736 5.99714 6.04924 6.28789 6.37456 6.43231 6.55269 6.79956 7.08907 7.26010 7.33637 7.40694 7.62011 7.90629 8.20126 8.91254 9.54376 11.01815 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.002660 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.443226 B =10524.198753 C =11368.885190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.100 3.900 4 C -0.175 4.175 5 C -0.098 4.098 6 C -0.090 4.090 7 C 0.165 3.835 8 N -1.131 6.131 9 S 2.782 3.218 10 O -0.963 6.963 11 O -0.998 6.998 12 N -0.995 5.995 13 C 0.093 3.907 14 C 0.257 3.743 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.155 4.155 24 C 0.097 3.903 25 O -0.308 6.308 26 C 0.024 3.976 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.042 0.958 40 H 0.264 0.736 41 H 0.140 0.860 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 -15.240 10.703 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.054 3.946 4 C -0.193 4.193 5 C -0.117 4.117 6 C -0.092 4.092 7 C 0.039 3.961 8 N -0.890 5.890 9 S 2.789 3.211 10 O -0.946 6.946 11 O -0.981 6.981 12 N -0.838 5.838 13 C -0.054 4.054 14 C 0.135 3.865 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.174 4.174 24 C 0.052 3.948 25 O -0.222 6.222 26 C -0.071 4.071 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.158 0.842 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.481 -14.940 10.253 23.195 hybrid contribution 0.611 0.591 -0.535 1.005 sum -13.870 -14.349 9.717 22.197 Atomic orbital electron populations 1.23065 0.78620 1.03922 1.01279 1.86170 1.20974 1.25986 1.89011 1.18286 0.89165 0.85214 1.01888 1.21057 0.99988 0.91366 1.06915 1.20856 0.93822 0.97348 0.99637 1.19569 0.93464 0.94214 1.01979 1.20054 0.99781 0.92993 0.83319 1.56345 1.88162 1.31198 1.13270 1.01964 0.73026 0.72776 0.73327 1.93647 1.85398 1.85345 1.30249 1.93519 1.59797 1.67903 1.76913 1.57604 1.24095 1.80947 1.21196 1.21390 1.03478 0.99098 0.81422 1.19060 0.79172 0.97625 0.90649 1.21460 1.11969 0.94197 1.29459 0.92201 1.24935 0.96255 0.96962 0.95826 1.69905 1.18733 1.28008 1.36777 0.86573 0.77977 0.83860 0.79124 1.20170 1.21163 1.19989 1.21062 1.00735 0.90403 1.05215 1.18210 0.88229 0.86138 1.02226 1.86158 1.18858 1.28120 1.89045 1.23113 0.78331 1.03966 1.01680 0.92703 0.92655 0.88276 0.84636 0.85040 0.89685 0.91004 0.75370 0.94331 0.90366 0.91566 0.95024 0.93959 0.92623 0.84200 0.92301 0.92533 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.44 10.28 -34.24 -0.35 -3.79 16 3 C 0.10 1.16 6.70 -39.13 -0.26 0.90 16 4 C -0.17 -1.72 9.04 -39.46 -0.36 -2.07 16 5 C -0.10 -1.02 9.69 -39.58 -0.38 -1.40 16 6 C -0.09 -1.01 5.28 -104.62 -0.55 -1.57 16 7 C 0.16 1.97 6.38 -5.19 -0.03 1.94 16 8 N -1.13 -16.43 6.04 -11.65 -0.07 -16.50 16 9 S 2.78 54.07 6.09 -107.50 -0.65 53.41 16 10 O -0.96 -22.98 16.99 -57.17 -0.97 -23.96 16 11 O -1.00 -20.32 16.34 -57.17 -0.93 -21.25 16 12 N -1.00 -20.08 3.23 -123.05 -0.40 -20.48 16 13 C 0.09 1.52 10.69 59.85 0.64 2.16 16 14 C 0.26 6.34 5.10 -5.20 -0.03 6.32 16 15 C -0.53 -14.84 9.38 -34.44 -0.32 -15.17 16 16 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 19 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.15 -1.72 8.69 -39.46 -0.34 -2.06 16 24 C 0.10 1.17 6.70 -39.12 -0.26 0.91 16 25 O -0.31 -3.68 10.28 -34.24 -0.35 -4.03 16 26 C 0.02 0.20 9.81 101.05 0.99 1.19 16 27 H 0.05 0.29 7.68 -51.93 -0.40 -0.11 16 28 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.08 0.97 7.74 -51.93 -0.40 0.57 16 33 H 0.07 0.78 7.99 -51.93 -0.42 0.36 16 34 H 0.41 5.55 8.65 -34.46 -0.30 5.26 16 35 H 0.04 0.50 8.05 -51.93 -0.42 0.08 16 36 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 37 H 0.07 1.02 7.05 -51.93 -0.37 0.66 16 38 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.14 1.37 6.30 -52.49 -0.33 1.04 16 42 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 43 H 0.06 0.41 7.66 -51.92 -0.40 0.01 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -36.02 383.00 -8.46 -44.48 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.19 Total: 0.90 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.02 Total: -6.01 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.27 Total: -62.32 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.61 Total: -53.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.65 Total: 53.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.02 -8.46 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045797003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.368 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds