Wall clock time and date at job start Wed Apr 1 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46872 * 2 1 4 4 C 1.46501 * 119.99953 * 265.13510 * 3 2 1 5 5 C 1.50698 * 109.47075 * 263.19362 * 4 3 2 6 6 H 1.08000 * 120.00143 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00300 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99535 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00420 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47238 * 119.99905 * 9 7 5 12 12 H 1.48494 * 109.47141 * 240.00099 * 9 7 5 13 13 C 1.34778 * 119.99662 * 85.13960 * 3 2 1 14 14 O 1.21697 * 120.00032 * 3.85535 * 13 3 2 15 15 C 1.46658 * 119.99807 * 183.85884 * 13 3 2 16 16 C 1.36537 * 125.98550 * 173.42064 * 15 13 3 17 17 C 1.40370 * 106.70546 * 180.02562 * 16 15 13 18 18 S 1.76205 * 126.44100 * 179.97438 * 17 16 15 19 19 O 1.42098 * 106.40445 * 1.48549 * 18 17 16 20 20 O 1.42100 * 106.40038 * 228.56212 * 18 17 16 21 21 N 1.65599 * 107.21438 * 115.02532 * 18 17 16 22 22 C 1.46498 * 120.00326 * 90.00099 * 21 18 17 23 23 C 1.46505 * 119.99840 * 269.71624 * 21 18 17 24 24 C 1.35131 * 107.11537 * 0.22520 * 17 16 15 25 25 C 1.50696 * 125.61664 * 179.74105 * 24 17 16 26 26 O 1.33929 * 108.76492 * 359.63206 * 24 17 16 27 27 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46994 * 299.99322 * 1 2 3 29 29 H 1.08995 * 109.47721 * 59.99294 * 1 2 3 30 30 H 1.09001 * 109.46994 * 240.00678 * 2 1 3 31 31 H 1.08994 * 109.47544 * 120.00182 * 2 1 3 32 32 H 1.09001 * 109.47294 * 23.19618 * 4 3 2 33 33 H 1.08997 * 109.46806 * 143.19638 * 4 3 2 34 34 H 0.96998 * 120.00008 * 179.97438 * 8 7 5 35 35 H 1.07999 * 126.65144 * 0.03655 * 16 15 13 36 36 H 1.08997 * 109.47193 * 179.72144 * 22 21 18 37 37 H 1.09000 * 109.46907 * 299.72043 * 22 21 18 38 38 H 1.09010 * 109.47080 * 59.71867 * 22 21 18 39 39 H 1.08997 * 109.47636 * 270.28394 * 23 21 18 40 40 H 1.09001 * 109.46593 * 30.28587 * 23 21 18 41 41 H 1.08997 * 109.46767 * 150.27732 * 23 21 18 42 42 H 1.08996 * 109.47512 * 89.99787 * 25 24 17 43 43 H 1.09003 * 109.46929 * 210.00174 * 25 24 17 44 44 H 1.09004 * 109.47077 * 330.00079 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3639 2.0361 -1.2642 5 6 3.8496 1.9319 -1.4941 6 1 4.4739 1.4280 -0.7711 7 6 4.4119 2.4799 -2.6274 8 7 3.6516 3.0931 -3.5081 9 14 6.2534 2.3502 -2.9128 10 1 6.8789 1.6166 -1.7833 11 1 6.5077 1.6179 -4.1794 12 1 6.8375 3.7125 -3.0029 13 6 2.1497 2.0496 1.1631 14 8 1.9300 1.4840 2.2180 15 6 2.5572 3.4584 1.1573 16 6 2.6061 4.2838 2.2438 17 6 3.0468 5.5338 1.7813 18 16 3.2942 6.9819 2.7543 19 8 2.9936 6.6206 4.0953 20 8 2.6405 8.0417 2.0697 21 7 4.9131 7.3281 2.7149 22 6 5.4500 8.2026 1.6694 23 6 5.8075 6.7647 3.7294 24 6 3.2402 5.4193 0.4488 25 6 3.7089 6.5198 -0.4677 26 8 2.9489 4.1659 0.0774 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.8345 1.5483 -2.0826 33 1 2.0758 3.0864 -1.2199 34 1 4.0472 3.4789 -4.3052 35 1 2.3547 4.0252 3.2618 36 1 6.5250 8.3173 1.8083 37 1 5.2550 7.7620 0.6917 38 1 4.9695 9.1791 1.7303 39 1 5.8645 7.4431 4.5806 40 1 5.4214 5.8001 4.0587 41 1 6.8019 6.6318 3.3034 42 1 4.7974 6.5075 -0.5233 43 1 3.2925 6.3655 -1.4632 44 1 3.3758 7.4824 -0.0796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084927036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:18 Heat of formation + Delta-G solvation = -105.423980 kcal Electronic energy + Delta-G solvation = -29837.716741 eV Core-core repulsion = 25690.813586 eV Total energy + Delta-G solvation = -4146.903155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.92885 -40.67669 -38.45343 -37.20156 -37.16590 -36.97885 -34.77754 -34.63209 -33.32634 -32.07282 -29.24820 -28.95012 -28.21256 -25.68729 -25.08510 -24.88028 -23.43034 -22.61454 -21.27317 -19.82936 -19.06557 -18.51723 -18.47902 -17.59744 -17.49071 -17.19477 -16.87657 -16.77020 -16.25938 -15.92530 -15.49282 -15.38309 -15.06150 -14.60399 -14.47072 -14.38185 -14.27185 -14.21868 -14.00232 -13.70750 -13.50296 -13.42896 -13.20681 -13.17910 -13.15523 -13.06206 -12.75251 -12.69819 -12.61745 -12.44611 -12.36272 -12.22250 -11.87137 -11.76093 -11.57960 -11.32778 -10.59195 -10.10996 -9.92838 -9.53445 -8.20137 -6.33043 -0.70786 -0.07408 0.54353 1.35981 1.40796 1.49755 1.52571 1.95357 2.04434 2.16735 2.40934 2.59662 3.08271 3.10211 3.30151 3.63863 3.81524 3.91660 4.11845 4.27062 4.30834 4.34253 4.36695 4.45269 4.47890 4.52647 4.61655 4.71609 4.73643 4.87345 4.90087 4.96900 4.97538 5.01491 5.04835 5.14315 5.19274 5.28224 5.54991 5.56100 5.65212 5.80129 6.02305 6.31329 6.73764 7.00093 7.36040 8.86782 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010665 B = 0.004847 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.675927 B = 5775.342903 C = 7426.207696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.538 4.538 6 H 0.042 0.958 7 C 0.033 3.967 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.591 3.409 14 O -0.569 6.569 15 C -0.088 4.088 16 C -0.060 4.060 17 C -0.789 4.789 18 S 2.742 3.258 19 O -0.979 6.979 20 O -0.969 6.969 21 N -0.999 5.999 22 C 0.064 3.936 23 C 0.082 3.918 24 C 0.145 3.855 25 C -0.121 4.121 26 O -0.119 6.119 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.037 0.963 34 H 0.269 0.731 35 H 0.174 0.826 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 9.209 6.559 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.316 5.316 4 C 0.126 3.874 5 C -0.576 4.576 6 H 0.060 0.940 7 C -0.168 4.168 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.191 1.191 13 C 0.379 3.621 14 O -0.453 6.453 15 C -0.140 4.140 16 C -0.082 4.082 17 C -0.874 4.874 18 S 2.827 3.173 19 O -0.970 6.970 20 O -0.959 6.959 21 N -0.841 5.841 22 C -0.079 4.079 23 C -0.063 4.063 24 C 0.086 3.914 25 C -0.176 4.176 26 O -0.011 6.011 27 H 0.113 0.887 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.191 0.809 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.795 9.241 6.964 12.178 hybrid contribution 0.888 -1.001 -0.707 1.513 sum 4.683 8.240 6.257 11.357 Atomic orbital electron populations 1.22043 0.94287 1.03537 1.01360 1.21586 0.95462 0.81234 1.03153 1.48306 1.61354 1.14629 1.07344 1.19386 0.95483 0.93038 0.79513 1.21446 0.92861 1.37001 1.06300 0.93972 1.25461 1.01770 0.94341 0.95216 1.70008 1.36769 1.37043 1.11226 0.85684 0.80744 0.78545 0.77805 1.20443 1.20406 1.19123 1.16788 0.77639 0.83438 0.84225 1.90745 1.55224 1.67868 1.31472 1.22220 1.11438 0.94318 0.86026 1.21500 0.97356 0.89669 0.99629 1.31949 1.26927 1.21001 1.07511 1.00539 0.72653 0.71820 0.72245 1.93516 1.83636 1.84744 1.35072 1.93526 1.73583 1.52761 1.76024 1.57155 1.25932 1.61139 1.39897 1.22167 1.02873 0.93651 0.89248 1.21815 0.95172 0.98581 0.90685 1.23489 0.89447 0.85316 0.93131 1.21400 1.04570 0.92355 0.99290 1.84733 1.61658 1.20265 1.34399 0.88681 0.93815 0.92766 0.89365 0.90844 0.95246 0.94499 0.92181 0.80889 0.86910 0.91202 0.90547 0.90765 0.91899 0.88101 0.85344 0.88140 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 10.21 71.98 0.73 -3.97 16 2 C 0.11 3.91 6.08 86.38 0.53 4.44 16 3 N -0.59 -25.96 2.49 -830.87 -2.07 -28.03 16 4 C 0.25 11.96 4.75 85.63 0.41 12.36 16 5 C -0.54 -27.81 8.39 25.60 0.21 -27.60 16 6 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 7 C 0.03 1.68 5.46 84.65 0.46 2.14 16 8 N -0.91 -47.62 13.29 21.45 0.28 -47.33 16 9 Si 0.95 40.01 29.54 68.60 2.03 42.04 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 13 C 0.59 27.01 7.54 86.44 0.65 27.67 16 14 O -0.57 -26.91 16.51 -4.34 -0.07 -26.98 16 15 C -0.09 -3.84 6.74 24.07 0.16 -3.68 16 16 C -0.06 -2.31 10.33 22.39 0.23 -2.08 16 17 C -0.79 -26.47 6.18 22.07 0.14 -26.33 16 18 S 2.74 77.26 5.46 -56.49 -0.31 76.95 16 19 O -0.98 -32.37 16.86 -128.00 -2.16 -34.53 16 20 O -0.97 -29.27 15.68 -128.00 -2.01 -31.28 16 21 N -1.00 -19.77 3.58 -562.68 -2.02 -21.79 16 22 C 0.06 0.88 10.24 127.77 1.31 2.18 16 23 C 0.08 1.32 10.25 127.77 1.31 2.63 16 24 C 0.15 5.04 7.31 24.97 0.18 5.22 16 25 C -0.12 -3.05 8.82 71.23 0.63 -2.42 16 26 O -0.12 -5.15 6.59 -5.02 -0.03 -5.18 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 3.06 8.03 -2.39 -0.02 3.04 16 31 H 0.07 2.66 7.52 -2.39 -0.02 2.64 16 32 H 0.03 1.48 8.02 -2.39 -0.02 1.46 16 33 H 0.04 1.92 5.43 -2.39 -0.01 1.90 16 34 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 35 H 0.17 6.25 8.06 -2.91 -0.02 6.22 16 36 H 0.11 0.88 7.79 -2.39 -0.02 0.86 16 37 H 0.07 0.89 4.43 -2.39 -0.01 0.88 16 38 H 0.08 0.97 8.00 -2.38 -0.02 0.95 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 41 H 0.10 1.08 7.92 -2.39 -0.02 1.06 16 42 H 0.13 2.51 6.83 -2.39 -0.02 2.49 16 43 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.13 2.67 5.96 -2.38 -0.01 2.65 16 Total: -1.00 -70.32 376.23 1.63 -68.70 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.02 Total: 16.88 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 6.95 Total: -9.44 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -3.80 Total: -97.15 kcal Atomic # 8 Polarization: -93.71 SS G_CDS: -4.27 Total: -97.98 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 77.26 SS G_CDS: -0.31 Total: 76.95 kcal Total: -70.32 1.63 -68.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084927036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.728 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds