Wall clock time and date at job start Wed Apr 1 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00089 * 2 1 4 4 C 1.50698 * 109.46871 * 90.00467 * 3 2 1 5 5 H 1.08001 * 120.00305 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00137 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99894 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00240 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47245 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47015 * 120.00465 * 8 6 4 11 11 H 1.48503 * 109.47569 * 240.00416 * 8 6 4 12 12 C 1.34778 * 120.00136 * 180.02562 * 2 1 3 13 13 O 1.21660 * 120.00564 * 185.05021 * 12 2 1 14 14 C 1.47032 * 119.99652 * 5.05030 * 12 2 1 15 15 N 1.35938 * 126.62465 * 77.47019 * 14 12 2 16 16 C 1.29903 * 108.74253 * 180.02562 * 15 14 12 17 17 O 1.34085 * 109.80747 * 359.97438 * 16 15 14 18 18 C 1.34778 * 108.23807 * 359.73066 * 17 16 15 19 19 C 1.47477 * 126.76735 * 180.28440 * 18 17 16 20 20 C 1.39753 * 120.10587 * 175.27382 * 19 18 17 21 21 C 1.37781 * 119.95050 * 180.02562 * 20 19 18 22 22 C 1.38959 * 120.28250 * 359.94898 * 21 20 19 23 23 C 1.39214 * 120.06274 * 359.97340 * 22 21 20 24 24 C 1.38345 * 119.97064 * 359.82705 * 23 22 21 25 25 O 1.36144 * 120.76419 * 180.22179 * 23 22 21 26 26 C 1.43177 * 116.69930 * 342.72057 * 25 23 22 27 27 C 1.53474 * 108.22000 * 46.26915 * 26 25 23 28 28 O 1.36067 * 119.22630 * 179.82655 * 22 21 20 29 29 H 1.08996 * 109.47287 * 85.32481 * 1 2 3 30 30 H 1.08999 * 109.47194 * 205.33040 * 1 2 3 31 31 H 1.09011 * 109.46673 * 325.32659 * 1 2 3 32 32 H 1.09005 * 109.47019 * 209.99956 * 3 2 1 33 33 H 1.08995 * 109.47442 * 330.00466 * 3 2 1 34 34 H 0.97002 * 120.00075 * 179.97438 * 7 6 4 35 35 H 1.07998 * 125.09534 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.02760 * 0.03490 * 20 19 18 37 37 H 1.07999 * 119.85979 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.02312 * 180.20626 * 24 23 22 39 39 H 1.08998 * 109.71643 * 286.58919 * 26 25 23 40 40 H 1.09000 * 109.75086 * 165.96766 * 26 25 23 41 41 H 1.08997 * 109.70434 * 180.48902 * 27 26 25 42 42 H 1.09001 * 109.74144 * 59.89145 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1270 2.8773 1.6728 7 7 3.5543 3.6175 0.6733 8 14 3.4378 3.4168 3.4340 9 1 2.8599 2.4167 4.3674 10 1 4.9003 3.5244 3.6679 11 1 2.8008 4.7379 3.6669 12 6 2.1389 -1.1672 -0.0005 13 8 3.3520 -1.1694 0.0922 14 6 1.4080 -2.4380 -0.1132 15 7 0.8815 -2.9730 -1.2465 16 6 0.3115 -4.1019 -0.9495 17 8 0.4408 -4.3447 0.3628 18 6 1.1281 -3.3251 0.9147 19 6 1.5047 -3.1800 2.3332 20 6 2.3063 -2.1097 2.7397 21 6 2.6566 -1.9775 4.0656 22 6 2.2155 -2.9039 5.0027 23 6 1.4154 -3.9714 4.6048 24 6 1.0563 -4.1082 3.2758 25 8 0.9715 -4.8848 5.5116 26 6 1.6522 -4.9246 6.7706 27 6 1.8153 -3.4839 7.2737 28 8 2.5773 -2.7545 6.3058 29 1 -0.3633 0.0838 -1.0242 30 1 -0.3633 -0.9288 0.4397 31 1 -0.3633 0.8453 0.5847 32 1 3.1500 1.1384 -0.5139 33 1 1.6085 2.0284 -0.5137 34 1 4.0312 4.4434 0.8505 35 1 -0.1905 -4.7483 -1.6541 36 1 2.6507 -1.3868 2.0151 37 1 3.2765 -1.1501 4.3780 38 1 0.4329 -4.9343 2.9668 39 1 2.6329 -5.3830 6.6441 40 1 1.0670 -5.5004 7.4877 41 1 2.3397 -3.4854 8.2292 42 1 0.8350 -3.0225 7.3932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173232403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:24 Heat of formation + Delta-G solvation = -41.354919 kcal Electronic energy + Delta-G solvation = -30386.425725 eV Core-core repulsion = 26106.856862 eV Total energy + Delta-G solvation = -4279.568863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.21473 -41.34027 -39.02219 -37.78991 -37.40768 -34.89047 -34.69388 -32.63373 -32.27035 -30.97492 -29.90746 -28.30045 -27.57666 -26.03244 -25.14158 -23.99940 -23.53003 -22.21714 -21.84724 -20.76430 -19.36951 -18.73703 -17.79884 -17.26661 -17.09360 -16.74721 -16.52137 -15.93130 -15.62475 -15.53647 -15.18599 -15.03715 -14.57335 -14.41225 -14.27725 -14.15295 -13.91695 -13.55988 -13.26782 -12.82550 -12.66851 -12.31513 -12.17112 -11.85484 -11.68044 -11.51203 -11.36794 -11.27566 -11.15540 -10.89568 -10.66351 -10.62390 -10.60764 -10.18838 -9.63526 -9.44826 -9.25666 -8.59961 -8.45354 -7.77885 -7.73941 -6.06171 -4.11208 0.48968 1.28851 1.84486 2.48876 2.53234 2.82931 3.01264 3.08466 3.29389 3.37521 3.40663 3.67142 3.73718 3.97539 4.30987 4.43613 4.45770 4.54319 4.62812 4.72701 4.91147 4.98320 5.08933 5.17781 5.22867 5.28764 5.30337 5.56941 5.66387 5.67950 5.80511 6.00436 6.05484 6.09119 6.14481 6.22738 6.46361 6.56801 6.75164 6.99326 7.25268 7.37164 7.44800 7.58433 7.89033 8.18184 8.25088 8.76886 8.95955 9.53867 11.02131 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008228 B = 0.005023 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.034227 B = 5573.291375 C = 8530.683651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.582 5.582 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.589 3.411 13 O -0.521 6.521 14 C -0.024 4.024 15 N -0.452 5.452 16 C 0.170 3.830 17 O -0.196 6.196 18 C 0.045 3.955 19 C -0.025 4.025 20 C -0.076 4.076 21 C -0.102 4.102 22 C 0.066 3.934 23 C 0.042 3.958 24 C -0.089 4.089 25 O -0.307 6.307 26 C 0.021 3.979 27 C 0.019 3.981 28 O -0.303 6.303 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.254 0.746 36 H 0.164 0.836 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 -17.916 8.489 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.313 5.313 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.722 3.278 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.373 3.627 13 O -0.398 6.398 14 C -0.147 4.147 15 N -0.181 5.181 16 C -0.057 4.057 17 O -0.083 6.083 18 C -0.009 4.009 19 C -0.026 4.026 20 C -0.094 4.094 21 C -0.120 4.120 22 C 0.021 3.979 23 C -0.003 4.003 24 C -0.108 4.108 25 O -0.222 6.222 26 C -0.055 4.055 27 C -0.057 4.057 28 O -0.217 6.217 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.270 0.730 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.095 0.905 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.304 -17.487 7.958 20.931 hybrid contribution -0.065 -0.153 1.616 1.625 sum -8.369 -17.640 9.574 21.746 Atomic orbital electron populations 1.21627 0.80878 1.02055 1.01158 1.48123 1.06618 1.07156 1.69389 1.19431 0.92587 0.77460 0.97943 1.21422 1.36645 1.06489 0.92037 0.92114 1.24906 0.95282 0.96323 0.97335 1.69939 1.38214 1.14302 1.30668 0.86500 0.78161 0.78492 0.84696 1.19551 1.20803 1.20982 1.16623 0.86423 0.81597 0.78025 1.90852 1.12702 1.86298 1.49958 1.22275 1.04520 0.99308 0.88579 1.70754 1.11264 1.08254 1.27842 1.28010 1.00952 0.95877 0.80819 1.84364 1.57719 1.41979 1.24189 1.21423 0.98590 0.87420 0.93480 1.17174 1.01595 0.97607 0.86209 1.21699 0.94524 0.96643 0.96527 1.20444 1.02193 0.98412 0.90961 1.19158 0.99484 0.94723 0.84557 1.18535 1.01252 0.90465 0.90024 1.20331 1.01687 0.99958 0.88784 1.86301 1.56640 1.54777 1.24485 1.23622 0.99339 0.97548 0.84957 1.23653 0.98032 0.91756 0.92244 1.86340 1.55486 1.66885 1.12964 0.93113 0.92931 0.90446 0.93539 0.94380 0.92705 0.72993 0.81907 0.83494 0.84240 0.90452 0.86085 0.86028 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.28 59.85 0.62 2.14 16 2 N -0.58 -12.81 2.86 -184.37 -0.53 -13.33 16 3 C 0.24 6.31 5.15 -5.19 -0.03 6.29 16 4 C -0.53 -14.43 9.39 -34.44 -0.32 -14.76 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.59 13.14 5.14 -12.70 -0.07 13.08 16 13 O -0.52 -13.41 15.43 5.22 0.08 -13.33 16 14 C -0.02 -0.45 4.97 -82.34 -0.41 -0.86 16 15 N -0.45 -7.40 11.34 -11.03 -0.13 -7.52 16 16 C 0.17 1.98 13.16 51.95 0.68 2.67 16 17 O -0.20 -2.63 10.56 4.98 0.05 -2.58 16 18 C 0.05 0.75 7.14 -35.67 -0.25 0.50 16 19 C -0.02 -0.41 5.87 -105.02 -0.62 -1.03 16 20 C -0.08 -1.40 9.41 -39.18 -0.37 -1.77 16 21 C -0.10 -1.73 9.94 -39.48 -0.39 -2.12 16 22 C 0.07 1.00 6.50 -38.95 -0.25 0.75 16 23 C 0.04 0.59 6.48 -39.18 -0.25 0.34 16 24 C -0.09 -1.28 9.64 -39.00 -0.38 -1.65 16 25 O -0.31 -3.72 10.41 -32.95 -0.34 -4.06 16 26 C 0.02 0.17 7.26 37.40 0.27 0.44 16 27 C 0.02 0.16 7.26 37.40 0.27 0.43 16 28 O -0.30 -4.08 10.41 -32.70 -0.34 -4.42 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.84 6.81 -51.93 -0.35 0.49 16 31 H 0.08 1.32 8.11 -51.92 -0.42 0.90 16 32 H 0.05 1.35 7.50 -51.93 -0.39 0.96 16 33 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.25 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.16 3.53 3.98 -52.49 -0.21 3.32 16 37 H 0.15 2.47 8.06 -52.49 -0.42 2.04 16 38 H 0.14 1.74 7.95 -52.48 -0.42 1.32 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -34.95 363.56 -6.32 -41.26 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.71 Total: 1.34 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.60 Total: 6.13 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.08 Total: -46.13 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.55 Total: -24.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.95 -6.32 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173232403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.092 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds