Wall clock time and date at job start Wed Apr 1 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00089 * 2 1 4 4 C 1.50698 * 109.46871 * 90.00467 * 3 2 1 5 5 H 1.08001 * 120.00305 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00137 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99894 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00240 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47245 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47015 * 120.00465 * 8 6 4 11 11 H 1.48503 * 109.47569 * 240.00416 * 8 6 4 12 12 C 1.34778 * 120.00136 * 180.02562 * 2 1 3 13 13 O 1.21660 * 120.00564 * 185.05021 * 12 2 1 14 14 C 1.47032 * 119.99652 * 5.05030 * 12 2 1 15 15 N 1.35938 * 126.62465 * 77.47019 * 14 12 2 16 16 C 1.29903 * 108.74253 * 180.02562 * 15 14 12 17 17 O 1.34085 * 109.80747 * 359.97438 * 16 15 14 18 18 C 1.34778 * 108.23807 * 359.73066 * 17 16 15 19 19 C 1.47477 * 126.76735 * 180.28440 * 18 17 16 20 20 C 1.39753 * 120.10587 * 175.27382 * 19 18 17 21 21 C 1.37781 * 119.95050 * 180.02562 * 20 19 18 22 22 C 1.38959 * 120.28250 * 359.94898 * 21 20 19 23 23 C 1.39214 * 120.06274 * 359.97340 * 22 21 20 24 24 C 1.38345 * 119.97064 * 359.82705 * 23 22 21 25 25 O 1.36144 * 120.76419 * 180.22179 * 23 22 21 26 26 C 1.43177 * 116.69930 * 342.72057 * 25 23 22 27 27 C 1.53474 * 108.22000 * 46.26915 * 26 25 23 28 28 O 1.36067 * 119.22630 * 179.82655 * 22 21 20 29 29 H 1.08996 * 109.47287 * 85.32481 * 1 2 3 30 30 H 1.08999 * 109.47194 * 205.33040 * 1 2 3 31 31 H 1.09011 * 109.46673 * 325.32659 * 1 2 3 32 32 H 1.09005 * 109.47019 * 209.99956 * 3 2 1 33 33 H 1.08995 * 109.47442 * 330.00466 * 3 2 1 34 34 H 0.97002 * 120.00075 * 179.97438 * 7 6 4 35 35 H 1.07998 * 125.09534 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.02760 * 0.03490 * 20 19 18 37 37 H 1.07999 * 119.85979 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.02312 * 180.20626 * 24 23 22 39 39 H 1.08998 * 109.71643 * 286.58919 * 26 25 23 40 40 H 1.09000 * 109.75086 * 165.96766 * 26 25 23 41 41 H 1.08997 * 109.70434 * 180.48902 * 27 26 25 42 42 H 1.09001 * 109.74144 * 59.89145 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1270 2.8773 1.6728 7 7 3.5543 3.6175 0.6733 8 14 3.4378 3.4168 3.4340 9 1 2.8599 2.4167 4.3674 10 1 4.9003 3.5244 3.6679 11 1 2.8008 4.7379 3.6669 12 6 2.1389 -1.1672 -0.0005 13 8 3.3520 -1.1694 0.0922 14 6 1.4080 -2.4380 -0.1132 15 7 0.8815 -2.9730 -1.2465 16 6 0.3115 -4.1019 -0.9495 17 8 0.4408 -4.3447 0.3628 18 6 1.1281 -3.3251 0.9147 19 6 1.5047 -3.1800 2.3332 20 6 2.3063 -2.1097 2.7397 21 6 2.6566 -1.9775 4.0656 22 6 2.2155 -2.9039 5.0027 23 6 1.4154 -3.9714 4.6048 24 6 1.0563 -4.1082 3.2758 25 8 0.9715 -4.8848 5.5116 26 6 1.6522 -4.9246 6.7706 27 6 1.8153 -3.4839 7.2737 28 8 2.5773 -2.7545 6.3058 29 1 -0.3633 0.0838 -1.0242 30 1 -0.3633 -0.9288 0.4397 31 1 -0.3633 0.8453 0.5847 32 1 3.1500 1.1384 -0.5139 33 1 1.6085 2.0284 -0.5137 34 1 4.0312 4.4434 0.8505 35 1 -0.1905 -4.7483 -1.6541 36 1 2.6507 -1.3868 2.0151 37 1 3.2765 -1.1501 4.3780 38 1 0.4329 -4.9343 2.9668 39 1 2.6329 -5.3830 6.6441 40 1 1.0670 -5.5004 7.4877 41 1 2.3397 -3.4854 8.2292 42 1 0.8350 -3.0225 7.3932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173232403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:23 Heat of formation + Delta-G solvation = -67.982782 kcal Electronic energy + Delta-G solvation = -30387.580396 eV Core-core repulsion = 26106.856862 eV Total energy + Delta-G solvation = -4280.723534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.37262 -42.33175 -40.71812 -38.94249 -38.36655 -36.73424 -35.91837 -34.68975 -33.41323 -32.06016 -30.99221 -29.97037 -28.92970 -27.59855 -26.40009 -25.48004 -24.65284 -23.80848 -22.96908 -21.85671 -20.77686 -19.80796 -18.98659 -18.67995 -18.45971 -18.19638 -17.92159 -17.22978 -17.18494 -16.71474 -16.51562 -16.08744 -16.01759 -15.72579 -15.49219 -15.33905 -15.03097 -14.76147 -14.61436 -14.41363 -14.11288 -13.91690 -13.54889 -13.47001 -13.23985 -12.87010 -12.81084 -12.65816 -12.60119 -12.41550 -12.20707 -12.04698 -11.87266 -11.68368 -11.56681 -11.14081 -10.64412 -10.55188 -9.73539 -9.59066 -8.95367 -8.22145 -6.35558 -0.71448 0.08335 0.68835 1.24781 1.36818 1.38756 1.39801 1.48912 1.53426 1.90486 2.11189 2.15949 2.40630 2.49333 3.08376 3.12661 3.19329 3.45258 3.55361 3.67208 3.87951 3.88871 3.96311 4.05893 4.20810 4.23491 4.28269 4.42433 4.54296 4.57338 4.59521 4.68962 4.79302 4.86996 4.92100 4.93469 5.14002 5.19141 5.22001 5.31741 5.50685 5.75526 5.76409 6.02918 6.23845 6.44936 6.49191 6.71161 7.09184 7.35240 8.86187 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008228 B = 0.005023 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.034227 B = 5573.291375 C = 8530.683651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.588 5.588 3 C 0.260 3.740 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.960 3.040 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.590 3.410 13 O -0.573 6.573 14 C -0.052 4.052 15 N -0.492 5.492 16 C 0.213 3.787 17 O -0.183 6.183 18 C 0.051 3.949 19 C -0.034 4.034 20 C -0.101 4.101 21 C -0.120 4.120 22 C 0.071 3.929 23 C 0.051 3.949 24 C -0.077 4.077 25 O -0.310 6.310 26 C 0.015 3.985 27 C 0.008 3.992 28 O -0.320 6.320 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.003 0.997 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.318 0.682 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.083 0.917 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.532 -21.011 10.636 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.318 5.318 3 C 0.139 3.861 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.567 5.567 8 Si 0.784 3.216 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.195 1.195 12 C 0.376 3.624 13 O -0.453 6.453 14 C -0.173 4.173 15 N -0.220 5.220 16 C -0.013 4.013 17 O -0.070 6.070 18 C -0.005 4.005 19 C -0.035 4.035 20 C -0.119 4.119 21 C -0.139 4.139 22 C 0.025 3.975 23 C 0.006 3.994 24 C -0.096 4.096 25 O -0.225 6.225 26 C -0.059 4.059 27 C -0.066 4.066 28 O -0.235 6.235 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.021 0.979 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.333 0.667 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.101 0.899 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.836 -20.586 10.111 25.366 hybrid contribution 0.664 0.652 1.011 1.374 sum -10.172 -19.934 11.122 24.991 Atomic orbital electron populations 1.21789 0.78034 1.03048 1.02552 1.48087 1.08362 1.06051 1.69325 1.18931 0.91076 0.79192 0.96857 1.21625 1.36760 1.06580 0.92515 0.92462 1.25766 0.94858 0.96335 1.01632 1.70053 1.38900 1.14818 1.32880 0.85472 0.77967 0.78536 0.79586 1.18825 1.20698 1.19509 1.17074 0.86045 0.82832 0.76426 1.90794 1.15167 1.87315 1.52032 1.21636 1.06551 0.98483 0.90606 1.70711 1.13417 1.10579 1.27318 1.29427 0.97171 0.94259 0.80470 1.84412 1.57093 1.40550 1.24961 1.21247 0.98583 0.87535 0.93118 1.17156 1.01819 0.97663 0.86906 1.21381 0.96664 0.97429 0.96443 1.20334 1.03098 0.99214 0.91217 1.19056 0.98959 0.94326 0.85175 1.18553 1.00048 0.90265 0.90559 1.20518 1.01017 0.99600 0.88444 1.86305 1.56941 1.53693 1.25544 1.24042 1.00408 0.97642 0.83827 1.24117 0.98504 0.91630 0.92325 1.86317 1.56475 1.68004 1.12655 0.91256 0.91196 0.90261 0.97871 0.94990 0.92380 0.66716 0.85744 0.84799 0.81623 0.89874 0.81881 0.82470 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.14 10.28 127.77 1.31 4.46 16 2 N -0.59 -27.45 2.86 -855.46 -2.44 -29.89 16 3 C 0.26 14.41 5.15 85.63 0.44 14.85 16 4 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 5 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 6 C 0.01 0.77 5.46 84.65 0.46 1.23 16 7 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 8 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 9 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.59 28.02 5.14 86.55 0.45 28.47 16 13 O -0.57 -32.13 15.43 -4.22 -0.07 -32.19 16 14 C -0.05 -1.98 4.97 40.91 0.20 -1.78 16 15 N -0.49 -15.41 11.34 -303.72 -3.44 -18.85 16 16 C 0.21 4.14 13.16 130.53 1.72 5.86 16 17 O -0.18 -4.33 10.56 -5.10 -0.05 -4.38 16 18 C 0.05 1.65 7.14 24.80 0.18 1.83 16 19 C -0.03 -1.15 5.87 -20.13 -0.12 -1.27 16 20 C -0.10 -3.96 9.41 22.53 0.21 -3.74 16 21 C -0.12 -4.31 9.94 22.33 0.22 -4.08 16 22 C 0.07 2.12 6.50 22.68 0.15 2.26 16 23 C 0.05 1.35 6.48 22.53 0.15 1.50 16 24 C -0.08 -2.08 9.64 22.65 0.22 -1.86 16 25 O -0.31 -6.44 10.41 -83.00 -0.86 -7.30 16 26 C 0.02 0.19 7.26 72.14 0.52 0.71 16 27 C 0.01 0.12 7.26 72.14 0.52 0.64 16 28 O -0.32 -8.22 10.41 -82.12 -0.85 -9.08 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 30 H 0.07 2.24 6.81 -2.39 -0.02 2.22 16 31 H 0.08 2.76 8.11 -2.38 -0.02 2.74 16 32 H 0.00 0.20 7.50 -2.38 -0.02 0.18 16 33 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.32 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.12 5.92 3.98 -2.91 -0.01 5.91 16 37 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 38 H 0.17 3.52 7.95 -2.91 -0.02 3.50 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -83.54 363.56 2.54 -81.00 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.08 Total: 11.18 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.87 Total: 18.33 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.60 Total: -104.63 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -1.84 Total: -52.96 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -83.54 2.54 -81.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173232403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.018 kcal (2) G-P(sol) polarization free energy of solvation -83.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds