Wall clock time and date at job start Wed Apr 1 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99841 * 2 1 4 4 H 1.48498 * 109.47029 * 90.00171 * 3 2 1 5 5 H 1.48489 * 109.47169 * 210.00132 * 3 2 1 6 6 H 1.48505 * 109.47078 * 330.00448 * 3 2 1 7 7 C 1.37878 * 119.99884 * 180.27977 * 2 1 3 8 8 H 1.08004 * 120.00128 * 359.71757 * 7 2 1 9 9 C 1.50700 * 119.99598 * 179.72371 * 7 2 1 10 10 N 1.46504 * 109.46653 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97555 * 124.72163 * 10 9 7 12 12 C 1.35242 * 107.86067 * 179.83263 * 11 10 9 13 13 C 1.40402 * 107.86580 * 0.41998 * 12 11 10 14 14 N 1.40181 * 125.97248 * 179.77051 * 13 12 11 15 15 C 1.34773 * 120.00315 * 359.97438 * 14 13 12 16 16 O 1.21604 * 119.99926 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00531 * 179.97438 * 15 14 13 18 18 C 1.40163 * 120.00336 * 175.52970 * 17 15 14 19 19 C 1.38780 * 120.02760 * 34.66905 * 18 17 15 20 20 C 1.38170 * 120.03331 * 180.02562 * 19 18 17 21 21 C 1.38221 * 120.17162 * 0.07765 * 20 19 18 22 22 C 1.38813 * 120.19017 * 359.94141 * 21 20 19 23 23 C 1.38802 * 119.86288 * 359.68232 * 22 21 20 24 24 O 1.36189 * 120.81017 * 180.10466 * 23 22 21 25 25 C 1.43175 * 116.76196 * 343.13479 * 24 23 22 26 26 C 1.53476 * 108.22192 * 45.98518 * 25 24 23 27 27 O 1.36125 * 119.35945 * 179.79724 * 22 21 20 28 28 N 1.31214 * 108.05816 * 359.73971 * 13 12 11 29 29 H 0.97000 * 120.00286 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47113 * 299.99752 * 9 7 2 31 31 H 1.09001 * 109.46989 * 59.99921 * 9 7 2 32 32 H 1.08006 * 126.06779 * 359.97438 * 11 10 9 33 33 H 1.07993 * 126.06683 * 180.15663 * 12 11 10 34 34 H 0.97004 * 120.00299 * 179.97438 * 14 13 12 35 35 H 0.97003 * 119.99501 * 355.52748 * 17 15 14 36 36 H 1.08005 * 119.98602 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.92116 * 180.09331 * 20 19 18 38 38 H 1.07993 * 119.90429 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.71729 * 286.29858 * 25 24 23 40 40 H 1.09004 * 109.71433 * 165.66104 * 25 24 23 41 41 H 1.09000 * 109.70672 * 180.63503 * 26 25 24 42 42 H 1.08994 * 109.74555 * 60.02853 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1941 -0.0058 8 1 1.4646 -2.1294 -0.0058 9 6 3.5116 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0170 11 6 4.8469 -3.1135 -0.9193 12 6 5.0539 -4.4049 -0.5750 13 6 4.2970 -4.6701 0.5774 14 7 4.2291 -5.8960 1.2539 15 6 4.9326 -6.9539 0.8040 16 8 5.6258 -6.8451 -0.1892 17 7 4.8677 -8.1323 1.4547 18 6 5.5237 -9.2568 0.9352 19 6 6.7321 -9.1097 0.2688 20 6 7.3786 -10.2180 -0.2437 21 6 6.8242 -11.4756 -0.0964 22 6 5.6157 -11.6321 0.5684 23 6 4.9661 -10.5228 1.0920 24 8 3.7808 -10.6545 1.7495 25 6 3.0689 -11.8815 1.5558 26 6 4.0648 -13.0411 1.6934 27 8 5.0830 -12.8779 0.7002 28 7 3.6647 -3.5698 0.9108 29 1 -0.4850 0.8400 0.0004 30 1 3.8711 -0.6780 -0.9023 31 1 3.8786 -0.6823 0.8776 32 1 5.2839 -2.6029 -1.7648 33 1 5.6856 -5.1086 -1.0966 34 1 3.6758 -5.9829 2.0459 35 1 4.3671 -8.2022 2.2826 36 1 7.1671 -8.1282 0.1501 37 1 8.3197 -10.1016 -0.7607 38 1 7.3330 -12.3388 -0.4991 39 1 2.6237 -11.8952 0.5610 40 1 2.2877 -11.9764 2.3101 41 1 3.5492 -13.9888 1.5387 42 1 4.5140 -13.0248 2.6863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186571167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:34 Heat of formation + Delta-G solvation = 6.494131 kcal Electronic energy + Delta-G solvation = -28681.040367 eV Core-core repulsion = 24435.839145 eV Total energy + Delta-G solvation = -4245.201222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55388 -42.14913 -41.14696 -38.73687 -38.28140 -36.31191 -35.73526 -35.16557 -33.09066 -32.13846 -31.04881 -30.39632 -29.39322 -28.86965 -25.75990 -25.14318 -24.04999 -22.79372 -22.31442 -21.71640 -21.27969 -19.73540 -19.56868 -19.08644 -18.78981 -18.15368 -17.93996 -17.17785 -16.92038 -16.53742 -16.22629 -16.10355 -16.03350 -15.77285 -15.56568 -15.36382 -15.28780 -14.80121 -14.74658 -14.44123 -14.11245 -13.86678 -13.78284 -13.18128 -12.95446 -12.85643 -12.68510 -12.49170 -12.17720 -12.01869 -11.81922 -11.71723 -11.65608 -11.44144 -11.27398 -11.00617 -10.86943 -9.78705 -9.23080 -9.11965 -8.91695 -8.36807 -6.47090 0.14481 0.30589 0.95015 1.05150 1.37435 1.40415 1.49533 1.63716 1.94873 2.07486 2.25958 2.29526 2.31172 2.74986 2.94145 2.96253 3.35956 3.74469 3.90279 3.94818 3.98419 4.20134 4.22233 4.27827 4.37609 4.46067 4.60319 4.61975 4.68921 4.70928 4.84943 4.92621 4.95159 5.02909 5.19241 5.24814 5.36313 5.49649 5.69941 5.72073 5.86998 5.91872 6.01638 6.37742 6.41586 6.55634 6.61311 7.05003 7.15862 7.23612 8.80242 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.002020 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.918993 B =13855.149407 C =14734.767127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.228 1.228 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.025 0.975 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.062 3.938 12 C -0.291 4.291 13 C 0.283 3.717 14 N -0.632 5.632 15 C 0.717 3.283 16 O -0.574 6.574 17 N -0.659 5.659 18 C 0.156 3.844 19 C -0.132 4.132 20 C -0.090 4.090 21 C -0.131 4.131 22 C 0.057 3.943 23 C 0.015 3.985 24 O -0.323 6.323 25 C 0.015 3.985 26 C 0.017 3.983 27 O -0.317 6.317 28 N -0.348 5.348 29 H 0.272 0.728 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.212 0.788 33 H 0.171 0.829 34 H 0.421 0.579 35 H 0.423 0.577 36 H 0.140 0.860 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.364 -26.038 3.411 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.151 1.151 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.044 0.956 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.086 4.086 12 C -0.322 4.322 13 C 0.027 3.973 14 N -0.283 5.283 15 C 0.417 3.583 16 O -0.450 6.450 17 N -0.308 5.308 18 C 0.061 3.939 19 C -0.153 4.153 20 C -0.108 4.108 21 C -0.150 4.150 22 C 0.011 3.989 23 C -0.033 4.033 24 O -0.238 6.238 25 C -0.060 4.060 26 C -0.058 4.058 27 O -0.232 6.232 28 N -0.179 5.179 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.228 0.772 33 H 0.188 0.812 34 H 0.258 0.742 35 H 0.261 0.739 36 H 0.158 0.842 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.091 0.909 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.887 -25.185 3.393 28.960 hybrid contribution -0.843 0.232 0.493 1.004 sum 13.044 -24.953 3.885 28.424 Atomic orbital electron populations 1.70055 1.08604 1.28783 1.50750 1.25945 0.95789 1.03605 0.93260 0.85606 0.79925 0.77157 0.79612 1.19067 1.15088 1.20432 1.21244 0.90583 0.93682 1.52929 0.95613 1.19907 0.94070 0.74356 0.99737 1.48508 1.34454 1.09953 1.19698 1.23254 0.94303 0.94621 0.96373 1.21740 1.11796 0.97190 1.01448 1.19058 0.97622 0.86141 0.94435 1.41283 1.49262 1.06280 1.31507 1.15565 0.80222 0.79937 0.82569 1.90833 1.44115 1.82799 1.27291 1.42068 1.55063 1.06107 1.27587 1.16888 0.93210 0.82615 1.01213 1.21277 0.92936 1.01134 0.99954 1.21118 1.00815 0.90139 0.98776 1.20767 0.92862 0.99350 1.01988 1.18814 0.94976 0.83233 1.01855 1.18539 0.88734 0.92431 1.03560 1.86216 1.30809 1.40501 1.66285 1.23942 0.94861 0.81929 1.05222 1.23940 0.88486 1.01506 0.91858 1.86304 1.54160 1.25640 1.57119 1.77316 1.25907 0.96701 1.17936 0.91915 0.89789 0.93696 0.77184 0.81175 0.74157 0.73921 0.84233 0.82004 0.82631 0.90893 0.83019 0.82925 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.96 40.68 27.47 68.60 1.88 42.57 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.23 -8.33 6.54 99.48 0.65 -7.68 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.59 9.79 25.60 0.25 -31.33 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C 0.24 11.02 5.33 85.63 0.46 11.47 16 10 N -0.34 -15.39 3.67 -351.84 -1.29 -16.68 16 11 C 0.06 2.29 11.44 83.52 0.96 3.24 16 12 C -0.29 -11.01 9.61 22.11 0.21 -10.80 16 13 C 0.28 11.31 8.11 133.32 1.08 12.39 16 14 N -0.63 -19.83 5.45 -321.23 -1.75 -21.58 16 15 C 0.72 21.40 8.38 179.06 1.50 22.90 16 16 O -0.57 -19.84 10.88 -4.04 -0.04 -19.88 16 17 N -0.66 -15.50 5.18 -316.78 -1.64 -17.15 16 18 C 0.16 3.76 6.32 38.18 0.24 4.00 16 19 C -0.13 -3.08 8.70 22.38 0.19 -2.89 16 20 C -0.09 -1.60 10.03 22.25 0.22 -1.37 16 21 C -0.13 -2.27 9.96 22.40 0.22 -2.05 16 22 C 0.06 1.14 6.49 22.54 0.15 1.29 16 23 C 0.01 0.32 6.51 22.64 0.15 0.47 16 24 O -0.32 -6.18 9.92 -83.43 -0.83 -7.01 16 25 C 0.02 0.17 7.27 72.14 0.52 0.69 16 26 C 0.02 0.16 7.26 72.14 0.52 0.68 16 27 O -0.32 -5.45 10.42 -82.70 -0.86 -6.31 16 28 N -0.35 -16.18 12.42 -54.44 -0.68 -16.86 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.08 3.35 7.12 -2.39 -0.02 3.33 16 31 H 0.05 2.00 7.57 -2.39 -0.02 1.98 16 32 H 0.21 5.63 8.06 -2.91 -0.02 5.60 16 33 H 0.17 6.21 5.91 -2.91 -0.02 6.19 16 34 H 0.42 10.87 8.84 -92.71 -0.82 10.05 16 35 H 0.42 7.73 8.54 -92.71 -0.79 6.94 16 36 H 0.14 3.63 6.19 -2.91 -0.02 3.62 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.15 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -81.06 358.06 1.67 -79.39 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.56 Total: 31.65 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 7.14 Total: 9.89 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -5.06 Total: -130.29 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.73 Total: -33.20 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.57 kcal Total: -81.06 1.67 -79.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186571167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.884 kcal (2) G-P(sol) polarization free energy of solvation -81.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds