Wall clock time and date at job start Wed Apr 1 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35665 * 116.99870 * 2 1 4 4 C 1.39126 * 119.86323 * 180.02562 * 3 2 1 5 5 C 1.36593 * 120.13924 * 180.02562 * 4 3 2 6 6 C 1.40261 * 119.86099 * 359.97084 * 5 4 3 7 7 C 1.46409 * 120.13801 * 179.97438 * 6 5 4 8 8 C 1.37877 * 120.00028 * 136.56160 * 7 6 5 9 9 C 1.43197 * 119.99956 * 168.08083 * 8 7 6 10 10 N 8.89529 * 109.20205 * 356.58506 * 2 1 3 11 11 C 1.46968 * 119.99721 * 348.08612 * 8 7 6 12 12 O 1.21566 * 120.00463 * 353.61977 * 11 8 7 13 13 O 1.34827 * 119.99454 * 173.62758 * 11 8 7 14 14 C 1.45204 * 116.99895 * 179.97438 * 13 11 8 15 15 C 1.50703 * 109.47236 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99944 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00039 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00211 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47233 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00155 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99843 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46801 * 89.99692 * 23 21 19 25 25 H 1.48496 * 109.47225 * 209.99900 * 23 21 19 26 26 H 1.48500 * 109.47156 * 330.00169 * 23 21 19 27 27 C 1.40263 * 119.73197 * 0.25639 * 6 5 4 28 28 C 1.36600 * 119.85705 * 359.49279 * 27 6 5 29 29 H 1.09003 * 109.47192 * 59.99394 * 1 2 3 30 30 H 1.09003 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47034 * 299.99886 * 1 2 3 32 32 H 1.08001 * 119.93441 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.07136 * 180.02562 * 5 4 3 34 34 H 1.07997 * 119.99764 * 316.28907 * 7 6 5 35 35 H 1.09003 * 109.47118 * 299.99551 * 14 13 11 36 36 H 1.08995 * 109.47179 * 59.99691 * 14 13 11 37 37 H 0.97002 * 119.99574 * 0.02562 * 17 15 14 38 38 H 1.08995 * 109.47412 * 300.00348 * 18 17 15 39 39 H 1.09009 * 109.46732 * 60.00060 * 18 17 15 40 40 H 0.96998 * 119.99732 * 180.02562 * 22 21 19 41 41 H 1.07996 * 120.07538 * 179.72043 * 27 6 5 42 42 H 1.07995 * 119.93157 * 180.27631 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4344 1.2783 -0.0005 5 6 4.0604 2.4924 0.0000 6 6 3.2992 3.6705 0.0005 7 6 3.9639 4.9751 0.0016 8 6 3.5046 5.9835 -0.8189 9 6 3.9785 7.3230 -0.6411 10 7 4.3547 8.3855 -0.5004 11 6 2.5286 5.6835 -1.8760 12 8 2.2137 4.5316 -2.1035 13 8 1.9827 6.6860 -2.5935 14 6 1.0265 6.3159 -3.6217 15 6 0.5263 7.5580 -4.3131 16 8 0.9349 8.6479 -3.9724 17 7 -0.3760 7.4578 -5.3092 18 6 -0.8628 8.6653 -5.9809 19 6 -1.8550 8.2812 -7.0481 20 1 -2.0990 7.2416 -7.2096 21 6 -2.4514 9.2570 -7.8183 22 7 -3.3177 8.9218 -8.7493 23 14 -2.0289 11.0551 -7.5395 24 1 -0.8768 11.4315 -8.3974 25 1 -3.2008 11.8985 -7.8863 26 1 -1.6730 11.2645 -6.1130 27 6 1.8987 3.5939 0.0058 28 6 1.2844 2.3738 0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0195 0.3705 -0.0005 33 1 5.1391 2.5451 -0.0009 34 1 4.8111 5.1488 0.6484 35 1 1.5098 5.6642 -4.3497 36 1 0.1871 5.7914 -3.1654 37 1 -0.7037 6.5862 -5.5809 38 1 -1.3459 9.3166 -5.2525 39 1 -0.0237 9.1904 -6.4374 40 1 -3.7369 9.6082 -9.2914 41 1 1.3073 4.4975 0.0108 42 1 0.2061 2.3135 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213359154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:05 Heat of formation + Delta-G solvation = -67.078081 kcal Electronic energy + Delta-G solvation = -28090.171325 eV Core-core repulsion = 23809.487022 eV Total energy + Delta-G solvation = -4280.684303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06454 -40.37301 -39.03240 -38.13570 -36.93727 -36.47602 -34.40237 -34.00089 -32.45484 -31.67424 -30.40712 -29.44296 -27.86761 -27.18766 -25.01490 -23.02879 -22.77565 -21.98731 -21.02732 -20.15499 -19.32724 -18.65403 -17.62477 -17.00535 -16.85152 -16.50227 -16.45235 -16.16548 -15.95771 -15.17530 -15.14590 -14.89736 -14.51434 -14.24684 -14.07572 -13.94104 -13.82150 -13.56903 -13.31892 -13.20400 -12.97183 -12.90837 -12.55197 -12.44094 -12.38914 -12.21092 -12.09643 -11.75253 -11.28162 -11.08640 -10.88216 -10.77652 -10.72840 -10.09097 -10.01453 -9.56420 -9.39270 -9.37153 -8.83529 -8.29465 -8.26301 -6.26045 -4.29118 -0.27603 1.04628 1.22238 2.07719 2.15003 2.56341 2.82654 2.99784 3.19820 3.24638 3.31498 3.35828 3.39779 3.50229 3.81018 4.25415 4.29729 4.37524 4.41172 4.52526 4.66433 4.75528 4.82066 4.91121 4.99546 5.07243 5.07966 5.11655 5.12540 5.18328 5.20281 5.33106 5.60391 5.81841 5.94324 6.04320 6.10831 6.26662 6.71443 6.93135 6.99135 7.06517 7.23282 7.29768 7.46985 8.02385 8.38736 8.65703 8.77547 9.33197 10.85664 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002281 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.771656 B =12273.937028 C =14265.181237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.157 3.843 4 C -0.167 4.167 5 C -0.037 4.037 6 C -0.144 4.144 7 C 0.089 3.911 8 C -0.107 4.107 9 C 0.252 3.748 10 N -0.394 5.394 11 C 0.513 3.487 12 O -0.485 6.485 13 O -0.323 6.323 14 C 0.052 3.948 15 C 0.500 3.500 16 O -0.534 6.534 17 N -0.699 5.699 18 C 0.222 3.778 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.891 5.891 23 Si 0.876 3.124 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.260 1.260 27 C 0.008 3.992 28 C -0.217 4.217 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.268 0.732 41 H 0.122 0.878 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -20.075 21.767 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.111 3.889 4 C -0.186 4.186 5 C -0.055 4.055 6 C -0.145 4.145 7 C 0.067 3.933 8 C -0.112 4.112 9 C -0.064 4.064 10 N -0.070 5.070 11 C 0.357 3.643 12 O -0.375 6.375 13 O -0.238 6.238 14 C -0.026 4.026 15 C 0.283 3.717 16 O -0.411 6.411 17 N -0.350 5.350 18 C 0.100 3.900 19 C -0.584 4.584 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.528 5.528 23 Si 0.702 3.298 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.185 1.185 27 C -0.010 4.010 28 C -0.235 4.235 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.233 0.767 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.140 0.860 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.107 -18.063 21.934 31.292 hybrid contribution -0.636 0.195 -0.513 0.840 sum 12.471 -17.867 21.421 30.555 Atomic orbital electron populations 1.23144 0.77796 1.04263 1.01846 1.86022 1.21928 1.27093 1.87711 1.19386 0.92447 0.84151 0.92894 1.20035 0.91236 0.98793 1.08515 1.20786 0.99664 0.90379 0.94662 1.18605 0.93497 0.91900 1.10490 1.23094 0.92298 0.89393 0.88553 1.17188 1.04339 0.87968 1.01657 1.25072 0.94332 0.92408 0.94572 1.81271 1.08016 1.10250 1.07444 1.20557 0.79347 0.83495 0.80948 1.90976 1.59299 1.20544 1.66632 1.86688 1.54104 1.37279 1.45748 1.22859 0.92470 0.97211 0.90032 1.19932 0.80757 0.89682 0.81341 1.90728 1.57684 1.28306 1.64408 1.46054 1.41974 1.12367 1.34566 1.19558 0.94666 0.83166 0.92568 1.21054 1.24227 0.96141 1.16940 0.90114 1.24784 0.94173 0.99294 0.94280 1.69873 1.27730 1.34190 1.20959 0.86826 0.78430 0.84616 0.79905 1.19769 1.20814 1.18469 1.20758 0.92827 0.97390 0.90066 1.20878 1.00397 0.92063 1.10192 0.92096 0.88024 0.92360 0.84823 0.84673 0.82477 0.87996 0.88084 0.76720 0.95427 0.95885 0.92171 0.86004 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.80 101.05 0.99 1.11 16 2 O -0.31 -2.52 10.48 -18.70 -0.20 -2.71 16 3 C 0.16 1.30 6.70 -38.92 -0.26 1.04 16 4 C -0.17 -1.19 9.92 -39.85 -0.40 -1.59 16 5 C -0.04 -0.22 9.75 -39.42 -0.38 -0.61 16 6 C -0.14 -1.03 4.56 -105.09 -0.48 -1.51 16 7 C 0.09 0.53 9.52 -36.43 -0.35 0.19 16 8 C -0.11 -1.00 5.73 -104.57 -0.60 -1.60 16 9 C 0.25 3.02 14.99 -22.48 -0.34 2.68 16 10 N -0.39 -5.81 18.54 41.83 0.78 -5.03 16 11 C 0.51 6.05 6.95 34.27 0.24 6.29 16 12 O -0.49 -5.77 12.13 -19.32 -0.23 -6.00 16 13 O -0.32 -4.80 9.31 -47.53 -0.44 -5.24 16 14 C 0.05 0.71 5.96 36.01 0.21 0.93 16 15 C 0.50 9.44 7.91 -10.98 -0.09 9.35 16 16 O -0.53 -12.54 16.50 -14.10 -0.23 -12.77 16 17 N -0.70 -13.67 5.55 -61.47 -0.34 -14.01 16 18 C 0.22 5.37 4.50 -5.20 -0.02 5.35 16 19 C -0.55 -14.69 9.83 -34.44 -0.34 -15.03 16 20 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 21 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 22 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 23 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 C 0.01 0.06 6.62 -39.41 -0.26 -0.20 16 28 C -0.22 -1.72 8.97 -39.84 -0.36 -2.08 16 29 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 34 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.40 6.62 8.32 -40.82 -0.34 6.28 16 38 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.59 7.57 -51.92 -0.39 0.19 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.12 0.97 7.09 -52.49 -0.37 0.60 16 42 H 0.13 0.85 6.27 -52.49 -0.33 0.52 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -36.51 378.36 -6.11 -42.61 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.72 Total: -0.25 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -2.52 Total: 6.42 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 1.21 Total: -44.40 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.11 Total: -26.72 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.51 -6.11 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213359154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.467 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds