Wall clock time and date at job start Wed Apr 1 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35665 * 116.99870 * 2 1 4 4 C 1.39126 * 119.86323 * 180.02562 * 3 2 1 5 5 C 1.36593 * 120.13924 * 180.02562 * 4 3 2 6 6 C 1.40261 * 119.86099 * 359.97084 * 5 4 3 7 7 C 1.46409 * 120.13801 * 179.97438 * 6 5 4 8 8 C 1.37877 * 120.00028 * 136.56160 * 7 6 5 9 9 C 1.43197 * 119.99956 * 168.08083 * 8 7 6 10 10 N 8.89529 * 109.20205 * 356.58506 * 2 1 3 11 11 C 1.46968 * 119.99721 * 348.08612 * 8 7 6 12 12 O 1.21566 * 120.00463 * 353.61977 * 11 8 7 13 13 O 1.34827 * 119.99454 * 173.62758 * 11 8 7 14 14 C 1.45204 * 116.99895 * 179.97438 * 13 11 8 15 15 C 1.50703 * 109.47236 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99944 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00039 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00211 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47233 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00155 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99843 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46801 * 89.99692 * 23 21 19 25 25 H 1.48496 * 109.47225 * 209.99900 * 23 21 19 26 26 H 1.48500 * 109.47156 * 330.00169 * 23 21 19 27 27 C 1.40263 * 119.73197 * 0.25639 * 6 5 4 28 28 C 1.36600 * 119.85705 * 359.49279 * 27 6 5 29 29 H 1.09003 * 109.47192 * 59.99394 * 1 2 3 30 30 H 1.09003 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47034 * 299.99886 * 1 2 3 32 32 H 1.08001 * 119.93441 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.07136 * 180.02562 * 5 4 3 34 34 H 1.07997 * 119.99764 * 316.28907 * 7 6 5 35 35 H 1.09003 * 109.47118 * 299.99551 * 14 13 11 36 36 H 1.08995 * 109.47179 * 59.99691 * 14 13 11 37 37 H 0.97002 * 119.99574 * 0.02562 * 17 15 14 38 38 H 1.08995 * 109.47412 * 300.00348 * 18 17 15 39 39 H 1.09009 * 109.46732 * 60.00060 * 18 17 15 40 40 H 0.96998 * 119.99732 * 180.02562 * 22 21 19 41 41 H 1.07996 * 120.07538 * 179.72043 * 27 6 5 42 42 H 1.07995 * 119.93157 * 180.27631 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4344 1.2783 -0.0005 5 6 4.0604 2.4924 0.0000 6 6 3.2992 3.6705 0.0005 7 6 3.9639 4.9751 0.0016 8 6 3.5046 5.9835 -0.8189 9 6 3.9785 7.3230 -0.6411 10 7 4.3547 8.3855 -0.5004 11 6 2.5286 5.6835 -1.8760 12 8 2.2137 4.5316 -2.1035 13 8 1.9827 6.6860 -2.5935 14 6 1.0265 6.3159 -3.6217 15 6 0.5263 7.5580 -4.3131 16 8 0.9349 8.6479 -3.9724 17 7 -0.3760 7.4578 -5.3092 18 6 -0.8628 8.6653 -5.9809 19 6 -1.8550 8.2812 -7.0481 20 1 -2.0990 7.2416 -7.2096 21 6 -2.4514 9.2570 -7.8183 22 7 -3.3177 8.9218 -8.7493 23 14 -2.0289 11.0551 -7.5395 24 1 -0.8768 11.4315 -8.3974 25 1 -3.2008 11.8985 -7.8863 26 1 -1.6730 11.2645 -6.1130 27 6 1.8987 3.5939 0.0058 28 6 1.2844 2.3738 0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0195 0.3705 -0.0005 33 1 5.1391 2.5451 -0.0009 34 1 4.8111 5.1488 0.6484 35 1 1.5098 5.6642 -4.3497 36 1 0.1871 5.7914 -3.1654 37 1 -0.7037 6.5862 -5.5809 38 1 -1.3459 9.3166 -5.2525 39 1 -0.0237 9.1904 -6.4374 40 1 -3.7369 9.6082 -9.2914 41 1 1.3073 4.4975 0.0108 42 1 0.2061 2.3135 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213359154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:04 Heat of formation + Delta-G solvation = -91.586310 kcal Electronic energy + Delta-G solvation = -28091.234082 eV Core-core repulsion = 23809.487022 eV Total energy + Delta-G solvation = -4281.747060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90231 -41.04622 -40.45164 -38.83942 -37.82800 -37.41806 -36.22837 -34.69175 -34.48122 -32.19329 -31.37900 -30.63618 -28.91785 -28.17130 -25.73959 -24.22712 -23.49811 -23.28593 -21.75890 -21.65522 -20.23847 -19.29036 -19.16466 -18.25229 -17.86482 -17.61125 -17.09434 -17.07217 -16.85357 -16.64486 -16.27436 -16.07690 -15.63314 -15.11441 -14.97113 -14.82707 -14.70189 -14.53612 -14.43541 -14.32813 -14.26886 -14.02178 -13.75787 -13.61276 -13.47698 -13.10570 -12.90681 -12.74024 -12.72576 -12.30376 -11.96381 -11.91206 -11.76190 -11.68713 -11.48741 -10.99475 -10.94213 -10.72563 -10.06574 -9.92348 -8.84869 -8.41983 -6.49010 -0.88801 0.51915 0.66137 1.13745 1.26784 1.31078 1.34423 1.45690 1.50583 1.63873 2.26039 2.36928 2.38252 2.48598 2.70086 2.87674 2.93443 3.60078 3.71663 3.74137 3.85291 3.97451 4.06399 4.07948 4.22354 4.38002 4.40757 4.41422 4.57278 4.68973 4.73226 4.77658 4.81574 4.97705 5.08600 5.17524 5.22741 5.31697 5.38490 5.41275 5.51460 5.78214 6.04271 6.36309 6.42140 6.50575 6.58076 6.71370 7.10620 7.26761 8.72469 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002281 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.771656 B =12273.937028 C =14265.181237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.145 3.855 4 C -0.179 4.179 5 C -0.024 4.024 6 C -0.162 4.162 7 C 0.148 3.852 8 C -0.142 4.142 9 C 0.280 3.720 10 N -0.457 5.457 11 C 0.516 3.484 12 O -0.490 6.490 13 O -0.353 6.353 14 C 0.063 3.937 15 C 0.501 3.499 16 O -0.583 6.583 17 N -0.695 5.695 18 C 0.232 3.768 19 C -0.546 4.546 20 H 0.064 0.936 21 C 0.029 3.971 22 N -0.929 5.929 23 Si 0.934 3.066 24 H -0.266 1.266 25 H -0.272 1.272 26 H -0.262 1.262 27 C -0.004 4.004 28 C -0.229 4.229 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.203 0.797 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.414 0.586 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.940 -21.804 23.307 34.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.099 3.901 4 C -0.198 4.198 5 C -0.042 4.042 6 C -0.162 4.162 7 C 0.126 3.874 8 C -0.148 4.148 9 C -0.034 4.034 10 N -0.134 5.134 11 C 0.361 3.639 12 O -0.379 6.379 13 O -0.269 6.269 14 C -0.014 4.014 15 C 0.287 3.713 16 O -0.464 6.464 17 N -0.347 5.347 18 C 0.108 3.892 19 C -0.584 4.584 20 H 0.082 0.918 21 C -0.172 4.172 22 N -0.567 5.567 23 Si 0.757 3.243 24 H -0.191 1.191 25 H -0.197 1.197 26 H -0.186 1.186 27 C -0.022 4.022 28 C -0.247 4.247 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.188 0.812 34 H 0.220 0.780 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.251 0.749 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.595 -19.846 23.481 34.033 hybrid contribution -1.130 0.446 -0.909 1.517 sum 13.465 -19.400 22.572 32.668 Atomic orbital electron populations 1.23350 0.76485 1.05592 1.02252 1.86002 1.23419 1.27253 1.87679 1.19681 0.93197 0.84279 0.92925 1.20363 0.91049 0.99927 1.08439 1.21155 1.01317 0.89292 0.92456 1.18801 0.93328 0.92785 1.11307 1.23574 0.91014 0.87311 0.85503 1.17030 1.06322 0.87693 1.03707 1.25361 0.92739 0.92482 0.92859 1.81290 1.10529 1.11830 1.09730 1.20825 0.79246 0.82947 0.80845 1.90976 1.59769 1.20289 1.66908 1.86675 1.54701 1.39167 1.46369 1.22742 0.93839 0.94110 0.90685 1.20738 0.79387 0.90811 0.80386 1.90704 1.59173 1.30772 1.65707 1.45834 1.42351 1.11739 1.34772 1.19159 0.93555 0.84730 0.91716 1.21253 1.24344 0.95489 1.17294 0.91752 1.25548 0.94166 1.03314 0.94155 1.69967 1.28993 1.35658 1.22096 0.85916 0.78618 0.80085 0.79639 1.19085 1.19738 1.18625 1.20885 0.93620 0.97347 0.90362 1.21017 1.01000 0.92123 1.10603 0.92181 0.86327 0.91452 0.83563 0.81205 0.77999 0.85469 0.85140 0.74930 0.96690 0.96907 0.91787 0.86338 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.80 113.37 1.11 1.26 16 2 O -0.33 -4.84 10.48 -89.82 -0.94 -5.78 16 3 C 0.15 2.14 6.70 22.70 0.15 2.30 16 4 C -0.18 -2.07 9.92 22.10 0.22 -1.85 16 5 C -0.02 -0.20 9.75 22.38 0.22 0.02 16 6 C -0.16 -1.77 4.56 -20.17 -0.09 -1.86 16 7 C 0.15 1.20 9.52 24.31 0.23 1.43 16 8 C -0.14 -2.38 5.73 -19.83 -0.11 -2.49 16 9 C 0.28 6.48 14.99 88.33 1.32 7.80 16 10 N -0.46 -13.55 18.54 19.00 0.35 -13.20 16 11 C 0.52 11.35 6.95 70.11 0.49 11.84 16 12 O -0.49 -10.59 12.13 19.62 0.24 -10.36 16 13 O -0.35 -10.16 9.31 -51.01 -0.47 -10.63 16 14 C 0.06 1.63 5.96 71.24 0.42 2.06 16 15 C 0.50 18.69 7.91 87.66 0.69 19.39 16 16 O -0.58 -27.71 16.50 15.77 0.26 -27.45 16 17 N -0.70 -26.92 5.55 -466.79 -2.59 -29.51 16 18 C 0.23 11.27 4.50 85.63 0.38 11.65 16 19 C -0.55 -29.63 9.83 25.60 0.25 -29.38 16 20 H 0.06 3.62 7.84 -2.91 -0.02 3.60 16 21 C 0.03 1.62 5.47 84.66 0.46 2.08 16 22 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 23 Si 0.93 44.07 27.47 68.60 1.88 45.95 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 27 C 0.00 -0.05 6.62 22.38 0.15 0.09 16 28 C -0.23 -3.30 8.97 22.10 0.20 -3.10 16 29 H 0.06 0.51 7.65 -2.39 -0.02 0.49 16 30 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 32 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.17 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.20 -0.17 8.06 -2.91 -0.02 -0.20 16 35 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.41 13.40 8.32 -92.71 -0.77 12.63 16 38 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 39 H 0.01 0.66 7.57 -2.38 -0.02 0.64 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.12 1.73 7.09 -2.91 -0.02 1.71 16 42 H 0.14 1.65 6.27 -2.91 -0.02 1.63 16 Total: -1.00 -81.44 378.36 5.39 -76.05 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.26 Total: 8.31 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 6.10 Total: 21.23 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -1.94 Total: -97.33 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.92 Total: -54.22 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -81.44 5.39 -76.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213359154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.535 kcal (2) G-P(sol) polarization free energy of solvation -81.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds