Wall clock time and date at job start Wed Apr 1 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00241 * 2 1 4 4 H 1.48492 * 109.47044 * 275.30451 * 3 2 1 5 5 H 1.48502 * 109.47314 * 35.30739 * 3 2 1 6 6 H 1.48505 * 109.47093 * 155.30604 * 3 2 1 7 7 C 1.38814 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00302 * 37.09217 * 7 2 1 9 9 N 1.36938 * 119.99740 * 217.08303 * 7 2 1 10 10 C 1.46970 * 120.59400 * 205.66503 * 9 7 2 11 11 C 1.53366 * 108.63569 * 235.24891 * 10 9 7 12 12 N 1.46966 * 108.63662 * 310.57887 * 11 10 9 13 13 C 1.34784 * 120.59247 * 235.20278 * 12 11 10 14 14 O 1.21656 * 119.99818 * 6.13621 * 13 12 11 15 15 C 1.47048 * 119.99889 * 186.13566 * 13 12 11 16 16 C 1.35875 * 125.42940 * 223.84351 * 15 13 12 17 17 C 1.41585 * 107.72278 * 180.23720 * 16 15 13 18 18 C 1.40109 * 133.37549 * 179.75329 * 17 16 15 19 19 C 1.36438 * 119.82902 * 180.02562 * 18 17 16 20 20 C 1.38949 * 120.61524 * 359.97438 * 19 18 17 21 21 C 1.37665 * 120.65051 * 0.02780 * 20 19 18 22 22 N 1.48022 * 120.09772 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99612 * 0.03197 * 22 21 20 24 24 O 1.21792 * 120.00043 * 180.02562 * 22 21 20 25 25 C 1.39235 * 119.80940 * 359.97438 * 21 20 19 26 26 N 1.37476 * 133.18151 * 180.02562 * 25 21 20 27 27 H 0.96995 * 125.60304 * 359.96096 * 26 25 21 28 28 C 1.46958 * 118.81433 * 55.47846 * 12 11 10 29 29 C 1.46971 * 120.59779 * 25.68927 * 9 7 2 30 30 H 0.97003 * 119.99995 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.60835 * 115.50423 * 10 9 7 32 32 H 1.08992 * 109.61062 * 354.99724 * 10 9 7 33 33 H 1.09001 * 109.60783 * 190.83212 * 11 10 9 34 34 H 1.09002 * 109.61199 * 70.32344 * 11 10 9 35 35 H 1.07992 * 126.13747 * 359.95395 * 16 15 13 36 36 H 1.07998 * 120.08421 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.69315 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.67491 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.61349 * 64.26531 * 28 12 11 40 40 H 1.08996 * 109.61080 * 184.77807 * 28 12 11 41 41 H 1.08990 * 109.60905 * 244.49746 * 29 9 7 42 42 H 1.09008 * 109.60357 * 5.00609 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3856 2.1110 -1.3940 5 1 1.5083 2.6177 0.8092 6 1 3.5994 1.4103 0.5849 7 6 2.0101 -1.2022 0.0005 8 1 1.6340 -2.0431 -0.5631 9 7 3.1718 -1.3219 0.7157 10 6 4.1923 -2.3051 0.3259 11 6 4.4920 -3.2045 1.5314 12 7 4.7404 -2.3524 2.7028 13 6 5.8833 -2.4708 3.4073 14 8 6.7675 -3.2073 3.0126 15 6 6.0615 -1.7097 4.6528 16 6 7.1885 -1.0417 5.0133 17 6 6.9526 -0.4495 6.2775 18 6 7.7348 0.3389 7.1318 19 6 7.2183 0.7722 8.3180 20 6 5.9212 0.4394 8.6886 21 6 5.1329 -0.3340 7.8666 22 7 3.7529 -0.6816 8.2739 23 8 3.3132 -0.2828 9.3374 24 8 3.0572 -1.3663 7.5455 25 6 5.6374 -0.7883 6.6510 26 7 5.1085 -1.5565 5.6411 27 1 4.2148 -1.9332 5.6270 28 6 3.7175 -1.3732 3.0960 29 6 3.4202 -0.4698 1.8871 30 1 -0.4850 0.8401 -0.0004 31 1 5.1015 -1.7871 0.0207 32 1 3.8194 -2.9116 -0.4994 33 1 5.3748 -3.8098 1.3256 34 1 3.6378 -3.8531 1.7254 35 1 8.1018 -0.9781 4.4406 36 1 8.7442 0.6023 6.8524 37 1 7.8230 1.3801 8.9746 38 1 5.5275 0.7909 9.6309 39 1 2.8093 -1.8943 3.3988 40 1 4.0886 -0.7689 3.9237 41 1 4.2744 0.1787 1.6931 42 1 2.5374 0.1356 2.0929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265791731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:07 Heat of formation + Delta-G solvation = 70.219521 kcal Electronic energy + Delta-G solvation = -30258.365057 eV Core-core repulsion = 26015.927175 eV Total energy + Delta-G solvation = -4242.437882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.70884 -41.79516 -39.79661 -37.68585 -37.19206 -36.64575 -34.17628 -33.16982 -31.84218 -31.00946 -30.44997 -29.77236 -27.46091 -26.68619 -24.64192 -23.49077 -23.09803 -22.81477 -21.85181 -20.74265 -19.77227 -18.92668 -18.84092 -17.89122 -17.78638 -17.71315 -16.47532 -16.26040 -15.87298 -15.46654 -15.14019 -14.93497 -14.77048 -14.48476 -14.37930 -13.86466 -13.67731 -13.53721 -13.04561 -12.79146 -12.70695 -12.46400 -12.36033 -12.26455 -11.99185 -11.77911 -11.33158 -11.29187 -11.20678 -10.94436 -10.76541 -10.58159 -10.54578 -10.31298 -10.07235 -9.58028 -9.02392 -8.94258 -8.56919 -8.39018 -7.16798 -6.18553 -3.38312 -0.53403 0.68414 0.95289 1.18202 1.69434 2.26188 2.73380 3.02053 3.16121 3.28543 3.40929 3.45920 3.96036 4.08044 4.19229 4.35652 4.42771 4.46505 4.60305 4.69335 4.94080 5.02519 5.10885 5.26328 5.33398 5.41894 5.43309 5.60040 5.67421 5.71489 5.83829 5.86133 5.87079 5.94081 6.03547 6.13190 6.30804 6.36259 6.44191 6.60005 6.64495 6.80742 7.37455 7.44136 7.75980 7.98087 8.14724 8.76961 9.56515 9.94614 10.95436 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.003631 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.555902 B = 7709.982305 C = 8674.289118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.832 3.168 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.280 4.280 8 H 0.085 0.915 9 N -0.598 5.598 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.587 5.587 13 C 0.574 3.426 14 O -0.528 6.528 15 C 0.050 3.950 16 C -0.118 4.118 17 C -0.113 4.113 18 C 0.000 4.000 19 C -0.159 4.159 20 C -0.012 4.012 21 C -0.058 4.058 22 N 0.038 4.962 23 O -0.158 6.158 24 O -0.186 6.186 25 C 0.149 3.851 26 N -0.553 5.553 27 H 0.437 0.563 28 C 0.075 3.925 29 C 0.135 3.865 30 H 0.264 0.736 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.981 0.596 16.505 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.659 3.341 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.407 4.407 8 H 0.103 0.897 9 N -0.321 5.321 10 C 0.006 3.994 11 C -0.028 4.028 12 N -0.318 5.318 13 C 0.360 3.640 14 O -0.404 6.404 15 C -0.060 4.060 16 C -0.143 4.143 17 C -0.119 4.119 18 C -0.018 4.018 19 C -0.179 4.179 20 C -0.032 4.032 21 C -0.145 4.145 22 N 0.553 4.447 23 O -0.375 6.375 24 O -0.394 6.394 25 C 0.033 3.967 26 N -0.159 5.159 27 H 0.280 0.720 28 C -0.050 4.050 29 C 0.008 3.992 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.687 0.290 15.918 23.063 hybrid contribution -0.618 0.932 0.057 1.120 sum 16.069 1.222 15.976 22.692 Atomic orbital electron populations 1.70113 1.06196 1.27076 1.47983 1.25186 0.94769 0.97417 0.98628 0.87660 0.82055 0.86202 0.78208 1.21789 1.21959 1.18314 1.18768 0.96312 0.97059 1.28547 0.89736 1.44290 1.18396 1.41375 1.28048 1.21351 0.92170 0.91654 0.94246 1.22369 1.01690 0.93239 0.85548 1.48069 1.17180 1.37485 1.29113 1.17204 0.82842 0.81633 0.82358 1.90837 1.40982 1.38818 1.69813 1.20441 0.89986 1.03807 0.91771 1.20859 0.98364 1.00036 0.95039 1.18145 0.92395 1.04219 0.97093 1.20899 0.99299 0.90273 0.91376 1.20668 0.94662 1.04280 0.98260 1.20965 0.92988 0.91009 0.98222 1.20156 0.84247 1.12846 0.97231 1.43552 1.02649 0.98441 1.00044 1.94521 1.76244 1.55869 1.10817 1.94505 1.57219 1.36444 1.51268 1.17659 0.94182 0.95908 0.88917 1.42599 1.15678 1.42791 1.14828 0.72009 1.22864 0.90980 0.91620 0.99545 1.21758 0.99800 0.92014 0.85619 0.92575 0.95313 0.90315 0.89206 0.90777 0.81687 0.83627 0.83325 0.82473 0.90132 0.91067 0.94705 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.39 13.97 55.49 0.78 -24.62 16 2 C 0.04 1.15 4.82 -17.43 -0.08 1.06 16 3 Si 0.83 20.29 26.42 -169.99 -4.49 15.80 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -5.98 4.93 56.52 0.28 -5.70 16 7 C -0.28 -7.34 9.85 -15.06 -0.15 -7.48 16 8 H 0.09 2.36 8.05 -52.49 -0.42 1.93 16 9 N -0.60 -13.25 2.72 -171.76 -0.47 -13.72 16 10 C 0.13 2.44 6.67 -3.60 -0.02 2.41 16 11 C 0.09 1.52 6.60 -3.60 -0.02 1.50 16 12 N -0.59 -9.41 2.94 -173.62 -0.51 -9.92 16 13 C 0.57 8.94 7.56 -12.69 -0.10 8.85 16 14 O -0.53 -9.37 16.49 5.23 0.09 -9.28 16 15 C 0.05 0.66 5.66 -82.29 -0.47 0.19 16 16 C -0.12 -1.31 10.75 -39.15 -0.42 -1.73 16 17 C -0.11 -1.13 6.16 -106.93 -0.66 -1.78 16 18 C 0.00 0.00 10.06 -39.53 -0.40 -0.40 16 19 C -0.16 -0.90 9.97 -39.97 -0.40 -1.30 16 20 C -0.01 -0.09 9.54 -39.53 -0.38 -0.47 16 21 C -0.06 -0.65 6.87 -79.78 -0.55 -1.20 16 22 N 0.04 0.52 4.45 34.04 0.15 0.67 16 23 O -0.16 -2.14 18.44 -29.46 -0.54 -2.68 16 24 O -0.19 -2.77 17.24 -29.46 -0.51 -3.27 16 25 C 0.15 1.75 6.84 -83.97 -0.57 1.17 16 26 N -0.55 -6.91 4.56 -7.36 -0.03 -6.94 16 27 H 0.44 5.43 6.69 -40.82 -0.27 5.16 16 28 C 0.07 1.22 5.88 -3.37 -0.02 1.20 16 29 C 0.14 2.74 4.55 -3.36 -0.02 2.72 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 33 H 0.09 1.37 6.99 -51.93 -0.36 1.01 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.15 0.36 8.06 -52.48 -0.42 -0.06 16 38 H 0.16 0.94 7.59 -52.49 -0.40 0.54 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.04 5.19 -51.93 -0.27 0.77 16 41 H 0.04 0.72 6.77 -51.93 -0.35 0.37 16 42 H 0.08 1.75 5.52 -51.92 -0.29 1.46 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -32.19 349.79 -9.09 -41.29 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.57 Total: 2.67 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -4.25 Total: 4.74 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.09 Total: -54.54 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.97 Total: -15.24 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.49 Total: 15.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.19 -9.09 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265791731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.505 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds