Wall clock time and date at job start Wed Apr 1 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00241 * 2 1 4 4 H 1.48492 * 109.47044 * 275.30451 * 3 2 1 5 5 H 1.48502 * 109.47314 * 35.30739 * 3 2 1 6 6 H 1.48505 * 109.47093 * 155.30604 * 3 2 1 7 7 C 1.38814 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00302 * 37.09217 * 7 2 1 9 9 N 1.36938 * 119.99740 * 217.08303 * 7 2 1 10 10 C 1.46970 * 120.59400 * 205.66503 * 9 7 2 11 11 C 1.53366 * 108.63569 * 235.24891 * 10 9 7 12 12 N 1.46966 * 108.63662 * 310.57887 * 11 10 9 13 13 C 1.34784 * 120.59247 * 235.20278 * 12 11 10 14 14 O 1.21656 * 119.99818 * 6.13621 * 13 12 11 15 15 C 1.47048 * 119.99889 * 186.13566 * 13 12 11 16 16 C 1.35875 * 125.42940 * 223.84351 * 15 13 12 17 17 C 1.41585 * 107.72278 * 180.23720 * 16 15 13 18 18 C 1.40109 * 133.37549 * 179.75329 * 17 16 15 19 19 C 1.36438 * 119.82902 * 180.02562 * 18 17 16 20 20 C 1.38949 * 120.61524 * 359.97438 * 19 18 17 21 21 C 1.37665 * 120.65051 * 0.02780 * 20 19 18 22 22 N 1.48022 * 120.09772 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99612 * 0.03197 * 22 21 20 24 24 O 1.21792 * 120.00043 * 180.02562 * 22 21 20 25 25 C 1.39235 * 119.80940 * 359.97438 * 21 20 19 26 26 N 1.37476 * 133.18151 * 180.02562 * 25 21 20 27 27 H 0.96995 * 125.60304 * 359.96096 * 26 25 21 28 28 C 1.46958 * 118.81433 * 55.47846 * 12 11 10 29 29 C 1.46971 * 120.59779 * 25.68927 * 9 7 2 30 30 H 0.97003 * 119.99995 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.60835 * 115.50423 * 10 9 7 32 32 H 1.08992 * 109.61062 * 354.99724 * 10 9 7 33 33 H 1.09001 * 109.60783 * 190.83212 * 11 10 9 34 34 H 1.09002 * 109.61199 * 70.32344 * 11 10 9 35 35 H 1.07992 * 126.13747 * 359.95395 * 16 15 13 36 36 H 1.07998 * 120.08421 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.69315 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.67491 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.61349 * 64.26531 * 28 12 11 40 40 H 1.08996 * 109.61080 * 184.77807 * 28 12 11 41 41 H 1.08990 * 109.60905 * 244.49746 * 29 9 7 42 42 H 1.09008 * 109.60357 * 5.00609 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3856 2.1110 -1.3940 5 1 1.5083 2.6177 0.8092 6 1 3.5994 1.4103 0.5849 7 6 2.0101 -1.2022 0.0005 8 1 1.6340 -2.0431 -0.5631 9 7 3.1718 -1.3219 0.7157 10 6 4.1923 -2.3051 0.3259 11 6 4.4920 -3.2045 1.5314 12 7 4.7404 -2.3524 2.7028 13 6 5.8833 -2.4708 3.4073 14 8 6.7675 -3.2073 3.0126 15 6 6.0615 -1.7097 4.6528 16 6 7.1885 -1.0417 5.0133 17 6 6.9526 -0.4495 6.2775 18 6 7.7348 0.3389 7.1318 19 6 7.2183 0.7722 8.3180 20 6 5.9212 0.4394 8.6886 21 6 5.1329 -0.3340 7.8666 22 7 3.7529 -0.6816 8.2739 23 8 3.3132 -0.2828 9.3374 24 8 3.0572 -1.3663 7.5455 25 6 5.6374 -0.7883 6.6510 26 7 5.1085 -1.5565 5.6411 27 1 4.2148 -1.9332 5.6270 28 6 3.7175 -1.3732 3.0960 29 6 3.4202 -0.4698 1.8871 30 1 -0.4850 0.8401 -0.0004 31 1 5.1015 -1.7871 0.0207 32 1 3.8194 -2.9116 -0.4994 33 1 5.3748 -3.8098 1.3256 34 1 3.6378 -3.8531 1.7254 35 1 8.1018 -0.9781 4.4406 36 1 8.7442 0.6023 6.8524 37 1 7.8230 1.3801 8.9746 38 1 5.5275 0.7909 9.6309 39 1 2.8093 -1.8943 3.3988 40 1 4.0886 -0.7689 3.9237 41 1 4.2744 0.1787 1.6931 42 1 2.5374 0.1356 2.0929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265791731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:06 Heat of formation + Delta-G solvation = 50.358098 kcal Electronic energy + Delta-G solvation = -30259.226313 eV Core-core repulsion = 26015.927175 eV Total energy + Delta-G solvation = -4243.299137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.56571 -42.71270 -41.00043 -38.78939 -38.32697 -37.61418 -35.79373 -33.92929 -33.65801 -32.47758 -31.26081 -30.69804 -28.98261 -27.55785 -26.01735 -25.00854 -24.42559 -23.57115 -22.79371 -22.02153 -20.83581 -20.08740 -19.78966 -19.11278 -18.67252 -18.62083 -18.08298 -17.53482 -16.97672 -16.66291 -16.18015 -16.07606 -15.99996 -15.68878 -15.52151 -15.41376 -14.85623 -14.69767 -14.35398 -14.24349 -14.16725 -13.62544 -13.33228 -13.10443 -12.97724 -12.83558 -12.79102 -12.61814 -12.38048 -12.35386 -12.23286 -12.19185 -12.02100 -11.48244 -11.46956 -11.37792 -10.74975 -10.08487 -9.73473 -9.35141 -8.99538 -8.28343 -5.44363 -1.34419 -0.19784 0.27337 0.36040 0.76869 1.30583 1.39162 1.42647 1.47390 1.56631 2.03091 2.39788 2.41643 2.85377 3.09216 3.26385 3.28807 3.42849 3.68693 3.85882 3.89216 3.96116 3.99484 4.15756 4.22241 4.27379 4.42741 4.45352 4.51837 4.59396 4.62521 4.76398 4.87333 4.93826 5.00932 5.09068 5.16153 5.18693 5.29953 5.32786 5.61209 5.78684 5.89450 6.04400 6.13627 6.42156 6.75201 6.82471 7.55718 7.97584 8.89263 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.003631 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.555902 B = 7709.982305 C = 8674.289118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.894 3.106 4 H -0.300 1.300 5 H -0.297 1.297 6 H -0.238 1.238 7 C -0.267 4.267 8 H 0.057 0.943 9 N -0.610 5.610 10 C 0.132 3.868 11 C 0.103 3.897 12 N -0.592 5.592 13 C 0.582 3.418 14 O -0.552 6.552 15 C 0.011 3.989 16 C -0.096 4.096 17 C -0.127 4.127 18 C 0.024 3.976 19 C -0.146 4.146 20 C 0.006 3.994 21 C -0.089 4.089 22 N 0.041 4.959 23 O -0.160 6.160 24 O -0.239 6.239 25 C 0.134 3.866 26 N -0.560 5.560 27 H 0.431 0.569 28 C 0.092 3.908 29 C 0.132 3.868 30 H 0.263 0.737 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.196 0.804 38 H 0.178 0.822 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.039 0.961 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.211 2.450 18.951 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.206 4.206 3 Si 0.721 3.279 4 H -0.228 1.228 5 H -0.224 1.224 6 H -0.162 1.162 7 C -0.396 4.396 8 H 0.075 0.925 9 N -0.334 5.334 10 C 0.006 3.994 11 C -0.020 4.020 12 N -0.324 5.324 13 C 0.369 3.631 14 O -0.430 6.430 15 C -0.098 4.098 16 C -0.121 4.121 17 C -0.133 4.133 18 C 0.005 3.995 19 C -0.165 4.165 20 C -0.014 4.014 21 C -0.177 4.177 22 N 0.549 4.451 23 O -0.379 6.379 24 O -0.436 6.436 25 C 0.018 3.982 26 N -0.166 5.166 27 H 0.273 0.727 28 C -0.032 4.032 29 C 0.005 3.995 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.202 0.798 36 H 0.205 0.795 37 H 0.213 0.787 38 H 0.195 0.805 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.932 2.097 18.340 27.908 hybrid contribution -1.731 0.389 -0.539 1.854 sum 19.201 2.485 17.801 26.300 Atomic orbital electron populations 1.70195 1.07694 1.27569 1.51155 1.25659 0.95172 1.00211 0.99602 0.86683 0.81677 0.82171 0.77409 1.22799 1.22350 1.16150 1.18725 0.97248 0.96049 1.27568 0.92541 1.44381 1.18275 1.42273 1.28520 1.21465 0.91225 0.91170 0.95493 1.22211 1.02242 0.92785 0.84788 1.48061 1.17497 1.37491 1.29313 1.17432 0.81831 0.81051 0.82751 1.90811 1.41573 1.39815 1.70815 1.20137 0.91447 1.06513 0.91692 1.21184 0.97838 0.97912 0.95161 1.18408 0.92091 1.05488 0.97293 1.21478 1.00415 0.87258 0.90305 1.21235 0.93596 1.03360 0.98308 1.21517 0.93399 0.88459 0.97990 1.20464 0.83259 1.15562 0.98437 1.43928 1.03613 0.97896 0.99652 1.94472 1.76946 1.55512 1.11006 1.94501 1.58643 1.38569 1.51889 1.18016 0.95172 0.96034 0.88967 1.42557 1.15432 1.43370 1.15242 0.72727 1.22555 0.91218 0.91244 0.98217 1.21747 0.98930 0.92440 0.86338 0.92766 0.94684 0.90095 0.87943 0.90811 0.79828 0.79491 0.78716 0.80498 0.90677 0.89016 0.94346 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 2 C -0.01 -0.45 4.82 84.86 0.41 -0.04 16 3 Si 0.89 42.84 26.42 68.60 1.81 44.66 16 4 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.24 -10.46 4.93 99.48 0.49 -9.97 16 7 C -0.27 -14.39 9.85 84.03 0.83 -13.56 16 8 H 0.06 3.29 8.05 -2.91 -0.02 3.27 16 9 N -0.61 -27.22 2.72 -697.32 -1.90 -29.11 16 10 C 0.13 4.82 6.67 86.41 0.58 5.40 16 11 C 0.10 3.27 6.60 86.41 0.57 3.84 16 12 N -0.59 -18.73 2.94 -821.45 -2.42 -21.15 16 13 C 0.58 17.65 7.56 86.55 0.65 18.30 16 14 O -0.55 -19.04 16.49 -4.21 -0.07 -19.11 16 15 C 0.01 0.28 5.66 39.91 0.23 0.50 16 16 C -0.10 -1.85 10.75 22.55 0.24 -1.61 16 17 C -0.13 -2.08 6.16 -21.36 -0.13 -2.21 16 18 C 0.02 0.17 10.06 22.30 0.22 0.39 16 19 C -0.15 -0.74 9.97 22.02 0.22 -0.52 16 20 C 0.01 0.07 9.54 22.30 0.21 0.28 16 21 C -0.09 -1.85 6.87 36.48 0.25 -1.60 16 22 N 0.04 1.13 4.45 -46.21 -0.21 0.92 16 23 O -0.16 -4.29 18.44 18.89 0.35 -3.94 16 24 O -0.24 -7.50 17.24 18.90 0.33 -7.17 16 25 C 0.13 2.92 6.84 39.14 0.27 3.19 16 26 N -0.56 -13.84 4.56 -177.18 -0.81 -14.65 16 27 H 0.43 11.20 6.69 -92.71 -0.62 10.58 16 28 C 0.09 3.02 5.88 86.57 0.51 3.53 16 29 C 0.13 5.30 4.55 86.56 0.39 5.70 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 2.88 7.92 -2.39 -0.02 2.86 16 33 H 0.10 3.04 6.99 -2.39 -0.02 3.02 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.19 -0.13 8.06 -2.91 -0.02 -0.16 16 37 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 38 H 0.18 1.34 7.59 -2.91 -0.02 1.32 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.09 2.66 5.19 -2.39 -0.01 2.64 16 41 H 0.04 1.53 6.77 -2.39 -0.02 1.51 16 42 H 0.06 2.65 5.52 -2.38 -0.01 2.64 16 Total: -1.00 -73.84 349.79 3.11 -70.73 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.26 Total: 12.53 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 5.45 Total: 21.59 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -5.03 Total: -119.30 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: 0.60 Total: -30.22 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.81 Total: 44.66 kcal Total: -73.84 3.11 -70.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265791731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.092 kcal (2) G-P(sol) polarization free energy of solvation -73.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds